RNA id: TU1687805


Basic Information

Item Value
RNA id TU1687805
length 1743
lncRNA type sense_over
GC content 0.43
exon number 2
gene id si:ch211-117k10.3
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64581666 ~ 64590850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATAATGTTGTATATGTCATTAGATTGTGTTTAAAAGACTACACTGTCACACATTCTATTCTACATATTATATTGCTCTGTGAATCTGCTTCAGGAGTTAGACCCTCAAGACAGTTTGAGGTAAATCCACTGGCCCAGCTCATTCTAGCCCATAATCTGTGCCATTAGCCCAGTTGAAATTTGAAAGTACTGTGTTGATATGTGAGCTGCCAGATTCTCTCAGAGAACAGGTTTGAGTCTAAATCTCTTACATATCCCCTCCTGCTCCCCATAGTGCCAAACCTCTGGCCCAATCACATCCCCCCTGACCCTAACGGCCAATTCAGTACTGTTATCACCACTTCCCTGACCTCGTGCCTCTTCCCACTCCCTAAAAGACCTCAGGGCTGCAgactagtgtctgctggttttcacCATGGTGCTTTACTGGTCCATTATGTAATAACTGGTTAGTTAAGAGTCCACTCACAGCCACCTGGTTTCCCAGGTTTGCGTCAGATGCTGATTGAAGGCAAGTAACTGAGTGAAAACCAGCAGACACCGTAGCCCACCTGGTCCACACTCTTAAACCTATAAGCTCTTTTACTGTCTTTATATGTCTTTGAAATCAATGTTAAACTGACAAAAGAGACTCGGCGAAAGCTACTTATGTGTATGCTGTATGTTTTATACATGGGCTTTTCAATGCAAAGCAATCCGATATGAAGAAGTGCTTAGTCATTTACACTAGTAAAGGTTAGTAGGTTAGGCCAGCAAGCAAAGCTAGTCATttatagtgtacagtactgtacctGAAAAGGGCAGCTGATCGTTGTCCAATCTGTGTCTgtaaaatataacatttacatgtaCAGAACATATAGAAGCTCCTTTCCAGAAAAACCCTTAGTCAGTACGTTAAGCTATCCAGTGGTGTCTGTGCTTGGTGAAACTGTGGAATGTTATTGAGGGGTCATCAGATCAGCCAGACGGGAGTTAATTATGAGACTCACTCTTCCGTTAATGAGTTAACCCATCACACCTCATCAATATGAGCCCTCTGTTCTCAAGTGCACTTATGTTAGCAGGTTCAGCAGGAGAGGGTTAAGCATGGAGAAAAAGGAATTGGACCTGTTGCTGAAAGGTGTCTGGTTAAAATCCTGTGGCGGGCACTGGAAAAATAGGTGTGAATTGATCTGGTAACTGAAGGGCTGCTGGATTCACATCCTAAAGATGTTCTTCTACTGTTGGGCCCTTAACCCCACAGCATGCTTTCCATCCAGGGGCCCTGCACTGCAGCTTGACCCTGTGCTTGTCTCAACTGTGTGTGATGTGTGCTGTAAGACATGGACAATAAAGTTGTTTTCTAAATGCTATGCCAAGGACTTGAGGGCTCTGCTACCAGTATGTAAGCTGTATCTCTGGATTTGAGTGTAAAATGTGCTTTTTCAACAGGCTACTGCACTTAGGAAACCATATAGAGAAAACAATGGACTTTTCAGGGTAGCAGTTTTGGCCCATATTCCTTCAGAGAAACCAGAGTGGGTACATGCGCTTTAAACCCACTTATATTGTACTCAAATTTCCAGTCCATCACTCACATTTGCCATCCATCCCAGTGATTCAGAACTTATGATGAGCCaaccttttttttaaacacatttaCCCATTTGGATGGGTAAACTCAGAATGGACCACCACATCATCAGTATCACTGGCAATCATCATCATTACATGGTATCTTGCCATTACAGAAACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1687806 lncRNA upstream 3936 64581687 ~ 64585150 (+) False si:ch211-117k10.3
TU1687804 lncRNA upstream 7740 64581110 ~ 64581346 (+) True LOC110494383
TU1687782 lncRNA upstream 69914 64518729 ~ 64519172 (+) True G1475807
TU1687743 lncRNA upstream 77819 64510927 ~ 64511267 (+) True G1475799
TU1687731 lncRNA upstream 93888 64494961 ~ 64495198 (+) True G1475787
TU1687808 lncRNA downstream 2376 64593226 ~ 64593455 (+) True G1475832
TU1687812 lncRNA downstream 6848 64597698 ~ 64597919 (+) True G1475836
TU1687819 lncRNA downstream 27881 64618731 ~ 64629393 (+) False G1475842
TU1687818 lncRNA downstream 34922 64625772 ~ 64629393 (+) True G1475842
TU1688000 lncRNA downstream 122580 64713430 ~ 64713631 (+) True G1475997
XM_021569385.2 mRNA upstream 7944 64572003 ~ 64581142 (+) False LOC110494383
XM_021569386.2 mRNA upstream 7944 64572003 ~ 64581142 (+) False LOC110494383
XM_021569383.2 mRNA upstream 35731 64527073 ~ 64553355 (+) False nucks1a
XM_021569384.2 mRNA upstream 35731 64527073 ~ 64553355 (+) True nucks1a
XM_036950438.1 mRNA upstream 308473 64256904 ~ 64280613 (+) True cldn19
XM_021569390.2 mRNA downstream 17344 64608194 ~ 64625111 (+) False LOC110494386
XM_021569391.2 mRNA downstream 17344 64608194 ~ 64625111 (+) False LOC110494386
XM_021569392.2 mRNA downstream 17344 64608194 ~ 64625111 (+) False LOC110494386
XM_036950441.1 mRNA downstream 17344 64608194 ~ 64625111 (+) False LOC110494386
XR_002469268.2 mRNA downstream 17344 64608194 ~ 64625111 (+) False LOC110494386
TU1687795 other upstream 23940 64563374 ~ 64565146 (+) True G1475820
TU1686672 other upstream 900996 63684090 ~ 63688090 (+) True tmcc2
TU1686655 other upstream 925832 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 1371492 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 1877950 62710339 ~ 62711136 (+) True G1473177
TU1687820 other downstream 17404 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 164471 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 164471 64755321 ~ 64780475 (+) False LOC110494389
TU1688642 other downstream 712567 65303417 ~ 65304128 (+) True G1476510
TU1688655 other downstream 735027 65325877 ~ 65327163 (+) True G1476520

Expression Profile