RNA id: TCONS_00046387


Basic Information

Item Value
RNA id TCONS_00046387
length 470
lncRNA type lincRNA
GC content 0.54
exon number 4
gene id XLOC_023451
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23383112 ~ 23642905 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTGGACAATTCCGTAGGCCAAGCGAGTGCAAGGCAAAGGGAATTAATCACAGCCAGAGCGGGAGGTCACTGACTGGCTCCCGAAACATCACGGTTGGGTCATGCGTCTCGGGGCCACGGCTTCATACACACACCACCACACTGTCTTATCCCCCGTCTGCTTTTTCCCCGGTCCAAGAAGAGTCTAGCTCAACCCCAGACACATACGCgtgctcacacacactcactcacgctCAAACACAGTGAAATAGGGCGATTCAGAGGACGGAAACGTTctgTGAAGTGTACACAGCGTGCTTTCTGTGGATGGCCTGCGTGTCTTCAGCACCGGCACAATCCTCTAAGGACCTGGCCTGACTCATCTGCGTGTGTGACAGTAAGAGCTAGCAGTATGGAGGTTGACAGGAGCACTGGCTTTCTGGTGCAGGAACACAGTCCCATGGTCATGTCCATGAGTTGGAGTGGATAA

Function

GO:

id name namespace
GO:0034448 EGO complex cellular_component
GO:1990131 Gtr1-Gtr2 GTPase complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194675

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047187 lncRNA downstream 371715 23145747 ~ 23218030 (-) False XLOC_023448
TCONS_00047186 lncRNA downstream 396072 23113605 ~ 23193673 (-) False XLOC_023448
TCONS_00047185 lncRNA downstream 411726 23113605 ~ 23178019 (-) False XLOC_023448
TCONS_00046381 lncRNA downstream 413809 23150373 ~ 23175936 (-) False XLOC_023448
TCONS_00046382 lncRNA downstream 435359 23151383 ~ 23154386 (-) True XLOC_023448
TCONS_00046859 lncRNA upstream 115283 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046860 lncRNA upstream 122182 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00047192 lncRNA upstream 462264 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 462264 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 478170 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046384 mRNA downstream 266219 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA downstream 266219 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA downstream 269522 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046375 mRNA downstream 833179 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 833237 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046390 mRNA upstream 13592 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA upstream 14734 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046392 mRNA upstream 14734 23647786 ~ 23675446 (-) True XLOC_023452
TCONS_00046394 mRNA upstream 54358 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046393 mRNA upstream 54358 23687410 ~ 23716097 (-) True XLOC_023453
TCONS_00046386 other downstream 316386 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1217645 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1280687 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1491982 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1621629 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046400 other upstream 338004 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 469669 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 502850 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 502876 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1375265 25008317 ~ 25024023 (-) False XLOC_023476

Expression Profile

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