RNA id: XM_036950452.1


Basic Information

Item Value
RNA id XM_036950452.1
length 4166
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110516128
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 65580256 ~ 65649976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgtgtacaggcttGTGTTTGTGGTAGTGAGAAGGGGGGTAGAAGTCTGTATGATTTTAAACCTGTGCCCGTCCCTTACTGGACAATCCTGGAACCCCCTTACCCAGGAATGACCAGTCTGTACTGATTGATTGGAACCTGGCTGAGATGAGCAGGAGGGCTGATTACACTCCAGTAAGATTACTACACTGTGTACTGGACACACTCGACATAATGCTGAGGGAGCTTCCTCACTCTCTCGGGCTGGACTGCAGTGCGTCTGCGTCGGCtcgccctcccctcccccctcgcCCCCCAGCCATGGCCTCACGAATAGGGCTGCGGCTGCAGCTGATGCGAGACCAGCTgcagcaggaggagcagcgggagCGGCAACAGCAGCAGAATGCGGCGCTGCAGTACATGCAACAGCAGCGTATGTCTGTCCCAGCACCCAGCCCTGCCATCAACGCACCACAACACTGCCAGAGCATGCAGGTGCCTGTGGAGGTCCTCAAGGTGCAGACTCACCTGGAGAACCCTACAGACTACCACATTCGCCAGTCCCAGAGACAACAGGTGAAGGAGTACCTCTCCACCACCTACGCCACCAAGCAGACAGTACACGCAGTAACAGGGGTGGTCCAACCATCCCCTCCCCCCACTCTGGCCCCCCCGGGGGCCTCTTCCTcggtcccccctcctctccactccccccgGCTCCGTACAGAGCAGCTCATCACAGGAAACAGCGCCCCTAACAGCCCCATGGCCATGCTCAACATCGGCTCCAGCCACGAGAACGAGGTACACGAgATGGATGAGGTCATCGATGACATCATCAGCATGCAGTCGAGCTATGATGACATCCAGCAGTACATTGACCCTGTTCAGATGTCCAACACACTCCCTCTGTCCAGCAGTCACCTGGACGTGTACACAGGCCCTGGGATGACCGGTCAATCCATTGCCATGACCAGCAACTCCTGCCCTGCCAACCTGGCCATCAAACGAGAGCTGACGGAAGCCCGTGCGATGGCCAAGGAGAGACAGAAGAAAGACAACCACAACCTGAttgagagaaggaggaggtTCAACATCAACGACCGCATTAAAGAGCTGGGCGGTATGATCCCCAAAACCAACGACCTGGACGTGCGCTGGAATAAGGGCACTATTCTGAGGGCTTCAGTAGAGTACATCAAGCGGATGCAGAAGGACATGCAGAGGACCAGAGAGGTGGAGAACAACTTCAAGAGGATGGAGATGGCCAACAAACAACTGTGGCTGCGcatccagGAGTTAGAGATGCAGGCTCGTCTGCACGGCCTCCCCAGCTCCTCTCCCTCTGGGATGAGTTCTGGTGACCTGATGGGTTCCTACGTCAAACAGGAGACCAGCCCTGAGGAGAAGCtccagcagcagcaggctcaGGCCCAGGgccagcaacacctccaccaccccCAGTCCCACCACCTCCAGCCTCAGCAGGGCCAGCTCAGGCAGCTGCCCCCTCTGCCCCCTCACCTCCAGCCCCAGCTTCCCCTCCAGTACTCAGCCGTGGGCAGCTCCCAGCCCTTTGACTTTGCCCAGTCGCTGGACTTGTGTGACGGGGTGCCTGGCTTCCCAGAGGGCCTGTCGGGGCTAGGGGAGCTGGGCGGCCTTGGTACCCAGGGAAGGAGAGGCGACCTGGGCTTCCTGATGATGGACGAGCCCCTGTCTCCTCTGGGTGGagaccctctgctctctgccatGTCCCCTGAGGCCTCGGTCGACTCCAGCCGCAGATCCAGCTTCAGCATAGAGGacacagatatactgtagatggagtatacacacacacaatgtagaaCCACACACagagtgtgtacacacacacacaatgtagaaCCACACacagtgtgtacacacacacacaatgtagaaCCACACACagagtgtgtacacacacacacaatgtagaaCCACACACagagtgtgtacacacacacacactgtagaaccACACACatagtgtgtacacacacacacaatgtagaaCCACACACatagtgtgtacacacacacactgtagaaccacacacacactgtagaaccACACACatagtgtgtacacacacacacatatggtaCGTATtgtacacacagtagaaatacacCCAGAGCACTGATATACTGTGACATGCTTATGCTCTGTTCAACAACCCTGCCAGCATACATTTGCACTCtaaactcccacacacacactccaagcaTGCTGTACAAACACTgatacacacttacacacacaaactTGACATTCTCATAGATGCACACCCTTTCTTAGCACTCGTATAGATACACATTCAACAGCAATATGAGAAATGAAACCACGTTTCAGATTGAAATTATTGTGTCCTACCACTGTAAATATCAGAGCACCTCTGAATGATAAACAATCTattacgcacacacacgcacacacgcacagcacAGACAGATTCTAGTTCACTCTAACACAGAAGAGACCCTGTTATTTGAAAGGTGAGGCACTGACAAAGGTTTGAGACACAGACCTCGACCCCTTACTTTGTAAAACACTGGCATGACCTCGAGTCTGCAAGCTACTGCCTTCTCCTGTGTCACCTATGACCTTTAGCCTTAAGGGTACTGCCAAGTCCACtccatgacctctgacccctgtgtgAACTCTGGACATTGAGGAGAGATGGTTTGGCCTTGATTGTGAGGTGTTGTAGCGATGCAAGGGGTTATATAGCTCCACAGGTTTCTAAGTAGTGCCACTGTGTAGCATCATAGGGTGCTATGTAGCGACTCAGGATCTCCTGTAGCCCTGACCCAAACCTGCCAACGGGCCTTGTGTTAGCCACCTGAAGACCCACTCTCTCTGGCTGAGATGGAGGGTGGGAGAGGGTTGTCTTTTAGTAAGTTGTACTGTATAGTTAGGAGAGAGAGGACCAGTCATAGAGATTGGCTTAGATAACCCAGTAATGTCATTGTCTCCACtgtaacaaacaaacacacacacacacacacacagcagtgtgCCTTGAGGCTGTGTTCAAATCAAGACTTTGAGCGAGACTTCGGTACCTCACCCAGTCTGTGCATGTAGAACTGTCAGCTTTGGGTCAACCAGGTTAAACTCGACACTCACCAGGTACTAACCAAACCAACTCTGTAGAAACCAAACTACAGCCGTACAATACATACATAAACTAACAGGAAAACAAATAGCTTTCAGATTTGGGTGAGGGACTGAGGTcaacactttgatttgatatggCTTATGATCAGTACAGAGAAAAGGAAGTAAAATGATGATTTTAAAGGTATTTGTTTGTATTCTATTATAGtttgttgttttatttgatttcatCTCCCAATGCACTGGAAGCTATATTATTTAATTGACTTTGTACATGAAAGACTTTTCAGTTTTATGCctcttaaaatgtattttatttgtatttgtcctttttattttattcctaAAGTACCTTTTTCTCTAAGAGCCATTTAAAGGTGAAAGTATTCAAGCCACTTGCGTGACAGTGTACGACCAGTGGGGAGCCATATTCTATACTTCTCTTTGTGGAAGAATTATTCAAATTTCACCAGGCTTTGAAGAGTTCAGAAGATCATGTACATTTACAGTATGATGTCATTTTTATATTGATTGGGATTTTCTCCCTTTTTTAACCTATAGAAATTGGAGCCAGAGACTAAGTTGAGAGGTGATTTTATTTGATTAAGTTTTAATTGTGAATGTGAAGATGGCCTGTACCGGTACCAAGCCAAACCCAAGCATCACAACAACGGGGTGTTTCCCTTCATGGTGCCACTTTTGACCCCTACTTTGGTTTCCATTTAGACTACTTCCTTCTGATGGAAGTCAGAACAACCATGGCGGAGTTCTGTTGCCATAGCGTTGGCACAgccttctctctgtctgccagaGTTCCCCTTTACCCTGCTCCAATGTTTGTAATCAATTGTTTTACTTTTGTGTATATTGTCCAGCCAACATTTTAAAGAGCTTGTCTGCAGATAATGTGGCGTGTTGTCCCCTCTGTGACTGTCCCCCTCCCCCATGTCACTGTATTCGACTGGTCAGGGGAAACTGGCATTCTGGTTTTGCTTTGGATATAAAATGTTTTACCAAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1688751 lncRNA upstream 68958 65540441 ~ 65541412 (+) True G1476599
TU1688578 lncRNA upstream 72419 65534720 ~ 65537951 (+) False G1476460
TU1688574 lncRNA upstream 72419 65537106 ~ 65537951 (+) True G1476460
TU1688573 lncRNA upstream 82609 65523697 ~ 65527761 (+) False LOC118940487
TU1688799 lncRNA downstream 4362 65654338 ~ 65654572 (+) True G1476642
TU1689074 lncRNA downstream 33241 65683217 ~ 65683552 (+) True G1476858
TU1689077 lncRNA downstream 37862 65687838 ~ 65688040 (+) True G1476861
TU1689086 lncRNA downstream 53473 65703449 ~ 65703883 (+) True G1476870
TU1689088 lncRNA downstream 56448 65706424 ~ 65706684 (+) True G1476872
XM_021569418.2 mRNA upstream 31426 65572367 ~ 65578944 (+) True LOC110494410
XR_005037053.1 mRNA upstream 57713 65523699 ~ 65552657 (+) False LOC118940487
LOC118940493 mRNA upstream 155540 65453352 ~ 65454830 (+) True LOC118940493
XM_036950447.1 mRNA upstream 595580 64996583 ~ 65014790 (+) False LOC110494396
XM_021569426.2 mRNA downstream 741420 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA downstream 741425 66391401 ~ 66401187 (+) True LOC110494417
XM_036947909.1 mRNA downstream 815479 66465455 ~ 66527607 (+) False pax7a
XM_036947910.1 mRNA downstream 815479 66465455 ~ 66527607 (+) False pax7a
XM_036947911.1 mRNA downstream 815479 66465455 ~ 66527607 (+) False pax7a
TU1688719 other upstream 143603 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 161857 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 283207 65325877 ~ 65327163 (+) True G1476520
TU1688642 other upstream 306242 65303417 ~ 65304128 (+) True G1476510
TU1688070 other upstream 829895 64755321 ~ 64780475 (+) False LOC110494389
TU1689118 other downstream 131803 65781779 ~ 65783335 (+) True G1476898
TU1689604 other downstream 638896 66288872 ~ 66290448 (+) True G1477313
TU1689884 other downstream 907061 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 1029284 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 1067397 66717373 ~ 66718688 (+) True G1477697

Expression Profile