RNA id: XM_036947912.1


Basic Information

Item Value
RNA id XM_036947912.1
length 5156
RNA type mRNA
GC content 0.46
exon number 9
gene id pax7a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66465455 ~ 66527607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTGTCTCCTCCTACAACGTGCGCCAAAGTTGGCCACTTACACTTTCAACCAGCAAGCAGACGTTATCAAAACTAGCTGTTGACCACTAAGTATATCAAGGCAAAGAATTAAATAACCTTTGCCCATTTACACATTTGAGTGCAAGGTGTATCCCCTCCCTTTACACACCACAAACCTCCTCACTATTGGGGTCTTCTTTTACCCCGGCATCTCTGCCTATCTAACATCACCACTTTTTATGTTGGAGGGGTTTTAGTATTTACGAGTTTCTCTGTCTGGGACTACGATTTATAGTTCGATTTTTTATCCTTTTGAGAGAAGACATTTCGTTACATCCTATCCGCAAATACCTACATTTTCTTGTCTGGACTTTGCGCGAGTAAGAATTTGGTACCAGTGCCCACTAGGTGTTTCTCCAGTAGCTAGAATGGCTACTTTACCAGGAACAGTGCCTCGAATGATGCGCCCTGCGCCAGGCCAGAACTACCCCCGCACCGGATTCCCTCTGGAAGGACAATATGCAGGACCTGAATATGTTTATTGTGGAACAGTATCAACCCCCCTTGGCCAAGGTCGGGTGAACCAGCTCGGTGGAGTGTTCATCAACGGGAGGCCGCTGCCAAATCATATCCGACACAAGATAGTAGAGATGGCACACCACGGCATTCGACCCTGCGTAATCTCGCGACAGCTACGAGTTTCCCATGGTTGCGTCTCCAAAATCCTCTGTCGGTACCAGGAGACCGGTTCGATTCGTCCCGGGGCTATAGGAGGCAGCAAGCCCAGGCAGGTAGCAACTCCGGACGTGGAGAAGCGGATTGAAGAGTACAAGCGTGAAAACCCCGGGATGTTCAGTTGGGAGATCCGGGACAAGCTGCTGAAGGACGGGGTGTGCGACAGAAGCACAGTTCCTTCAGtgagTTCCATCAGCCGAGTTCTGAGGGCGCGATTCGGCAAGAAAGATGACGACGACGATAGTGATAAGAAGGATGAAGACGGAGAAAAGAAAACAAAGCATAGCATCGATGGCATTCTCGGCGATAAAGACGAGGGTTCAGACGTGGAGTCGGAGCCGGACCTTCCCCTGAAGAGGAAACAGCGTCGCAGCCGCACCACCTTCACAGCCGAGCAGCTTGAGGAGCTGGAGAAAGCCTTTGAGAGGACACACTACCCAGACATCTACACCAGGGAAGAGCTGGCCCAGAGGACCAAGCTCACTGAGGCCCGCGTACAGGTGTGGTTCAGCAACAGAAGGGCCAGATGGCGCAAGCAGGCAGGAGCCAATCAGCTGGCTGCCTTCAACCACCTGTTACCTGGAGGCTTCCCGCCCACGGGGATGCCCAGTCTACCTACCTACCAGCTACCTGAGTCCTCGTACCCCGGCACTACACTGTCACAGGATGGCAGCAGTACGTTGCATCGGCCCCAGCCCCTGCCTCCGTCCTCAATGCACCAGGGAGGACTCTCTGATGGCAGCTCCGCCTACGGCCTCTCGTCCAATCGCCACAGCTTCTCCAGCTACTCAGACAGCTTCATGAGCCAATCAGCGGCCAGCAATCACATGAACCCGGTCAGCAACGGCCTCTCCCCACAGGTGATGAGCATCCTGAGTAACCCCAACGCGGTGCCCTCCCAGTCCCAGCATGacttctccatctcccccctccaTGGCAGCCTGGAGTCCTCCAACCCCATCTCAGCCAGCTGCAGCCAGCGCTCTGACTCCATCAAGGGGGTGGACAGCCTGGCTTCCTCCCAGTCCTACTGCCCCCCCACCTACAGCGCCACCAGCTACAGTGTGGACCCTGTCACCGCTGGATACCAGTACAGCCAGTATGGACAGACTGCAGTTGACTACCTGGCTAAGAACGTGAGTCTGTCCACCCAGAGGAGGATGAAGCTGGGAGACCACTCTGCTGTCCTGGGACTGCTGCAGGTGGAGACGGGAcaggcctactgaaacacccaGCCTCTGCCTGACTCCACCCAGTCTAAACTCAACACCCCCCTACAGTACATACACCACGCTACTGCTGCGCCCCACCCTGCAGCCCATCCACTGCACCagcacacattctctctctcctcacccagcaggcagtcaggcagtcaggctGTGTAAACCTTGGCTCTGCCCCTCCCCTGTACCATCCTCACCCCTGATTGGCTCTGTCCAGACATCCCAGAGACATTGGCTCCAGCCAGCATGGAGAACAGGCCCCTGGCTGCAGTCCAGTCCACACTCAGAGCCATTTCCAAATGTACATTGACCTTGTTGTTTATAGTAGTTCACTAAGCCAATGTCATTCAAATGATAATCCCTCTTGTTTTATATCAATATTGTTTATATTATTATTGCTGTTATGATTATGATTCATGTGATTTTGTTTTTTATTCTCTTCATGGCTCTTTTTTCTGTCAGTGTGAtgcagagtgtgtctgtgtgtgtgtggatgtgtgcgtACGTTCATGCGTGTGGcggcccagtcagagagagatgCTCCCACATgagaaaatactacagtttactatagaataacACAGTGCTTACTATCGAATTCTATAGTaaattgtagtatactgtagaatactatactacacactgtagtatccctcgaccATGTATAGTACTTACTAttgaatgttgtagtatactgtagaacccccccccccccccctcccccccagacacacacacaaatcgtaatttgtgccacccataaatggaaacctacatgccaagtatagaaaATATGTTTTGtcccctacaggttatagaaggGAGCAGACTCTCTGAACTACGGCTCAGACCCCAGATCTACATACCTACCTACATACAAGGAGAAAGCTTCCACTTCTAAACTATACAGTATTCTACAGTTCCCAAAAACACAACATTTATTCATGTAGTATATACTTTTTTTCTTACTACAGTACTATAGTTATCTGTAATTTATACAGTATACTTCAGTAAATATTACAGTAGATGctacagtaaagtccacaaaaaccctacagtgaatactatagtatttttacCATAGTATACAATACCTGATTGTTTCCCAGACTGCTGTTCCTCTGCCTGTTCCCTGAGCTCTAATCTTAGTAAGCGTTTTGACCTTCTCACTTTCATATACAACTTGACATTCCTAAAGAACTTGGCCACTCTGTGGGAAGTCTGGCTGGGCGGATTCTACTGGGAATTGGCAGCGGTTTGGCGGCCAATGGCTTCCCCCCTCCCAACATCTATCCCATCCTTAGCTGTACTTCATGGGGAGGAGGGCACTGTTTGTAAAAACAGGATTGGGGAAATTCATTTTTTCTGTTTACAAATATGGACCTTGCCAATGAGGACTGACCCCCTATCCCCCAAACCCCATCTACCACAGAACTCTATGTGACTTTAAGAGAGTAAAGGAGATTAAATGACACAAACATACTGTCAAAGCTAATTCATAATTACCGTTCTCATTACCAGCCACCTTTTATATTCTCTTAGGATAATTAAGACATTTTCTAAAGGCACATGCAGCTGTTTACCACTTTGGTTTGGACCAAGTCAGCATTCCTGTGAAACATTCCTCCAGGATGGTTGAATAACTCAAGTCACATTGCTTTTCTGCTCATGATGAGATTAAGAGTACACAAGCTGTGCCAGTCACATGCACTTTGGCAAATCAAATAATCCAGTCAATTGTGAAAGGGCACAGGTAACAGCCCTGGCTGGCCCCCTCTCTGGCTTTGACTGAATACTCCCTCCTCCTAGTCCCCTGGACATTCAACTCCTGCTTTGACCGACACACTCACAGAAATGTACTAAAACAAACCATTTTTTTTAGAATAGCAAATATGAAACATCTGTGTAGCACTCGTAGTTGACATTTAACACAATCTATTTTGGGCTGAATTCTAACTTGAGATATGTTTGCATAACTCCCATTGACATCCgtgtgtgattgttttgcaaaagttGGAGTGAGTTAGGTATGCATATTTCAAGTCAGGATTTAGTCCTTAGTCGCATATACATGGACATGATACAGTAGACGGGTAGATTGTGAATTGTTTGATTATAAAAAGTATGTTTTATACTAAAACAAGAACAATGTTCAGTGGTAGTTAAAGCAAGAGATCTGCGGAAGTcagtgtattttttatttactgGTTTCCTTCTGTTGTTTTTGGTTgtgttatattgtattgatttCTTTCAACAAAATGCAGTGTTTTGCGCCCAGCTAAGTAAGGAATTCTGTATATTAAATTAGGAAAAAATTCCAATAAATTTCCTCGATTTAATAATTGTATAAAAGAGGTTGAAACTCAACTGAGTGGATTTAAGttagtagacagagagagagagagagagagagagagagagagagagagagagaggagagagagagagagagagagagagtctcggACCAATGTGTTTTGATGGTGACCAGATGGAACCTATTATACTACACCTGTGCAGCCAGGAGCATTGGAAGGTGTATTCCAGCACTTGATCTTATGGACTCATGATCTGAGTGCAGACCTTACCGTGGACCATACATATctatctgacctctgacctctcagTGTGAAACATTGTCGAGGGGCTCAGCAGCACAGCTTTGATGCCATGAAGGATGGTGACCTTTCCTTTCTGGGAAAGAGGTTAGAATAGAATGGTGGACCGACCAGTGTGTTCTCTGGCTATGTGTGTTTACAGCCAGGCTCCAGTGGAGGACACCTGACTGAAAGTAATGACTCTGAAGCACTGAACCCAGGCTGGTCTAAAATATCTGTTTAAAAATGCCACATTAttgtgtatataaaaaaaatgtttttttaaatgcttttagTGTATCAAATCCATTTCTAACACCTGCGTTAATCGACATTTGGATATTTAAATCATTAtgactcttcctctccccaccttctctctgaCCCCTAACCTGTTTACTTGCTTTATGGCATCTGTGTTTTTCTTTTTTCCCTTCCTGTTCCGCATGTGTGGATATTACCATGGTATAATTTATTCTGCTGTATGAAGTATTAGAGTAGTGGGAACTTGTATTGGTATTTACTACCTTCAGCCTGTTGGTGTGTTGACTGTAACACTGGCGTAACTGTTATCAATTAAAGCTCTAAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689673 lncRNA upstream 26993 66430920 ~ 66438462 (+) True G1477377
TU1689677 lncRNA upstream 37899 66427220 ~ 66427556 (+) True G1477381
TU1689674 lncRNA upstream 38418 66426660 ~ 66427037 (+) True G1477378
TU1689675 lncRNA upstream 40803 66424285 ~ 66424652 (+) True G1477379
TU1689667 lncRNA upstream 46459 66411792 ~ 66418996 (+) True G1477371
TU1689876 lncRNA downstream 23906 66551513 ~ 66551726 (+) True G1477570
TU1689882 lncRNA downstream 28653 66556260 ~ 66556536 (+) True G1477576
TU1689902 lncRNA downstream 51329 66578936 ~ 66579231 (+) True G1477594
TU1689906 lncRNA downstream 55312 66582919 ~ 66583146 (+) True G1477598
TU1689909 lncRNA downstream 59344 66586951 ~ 66587172 (+) True G1477601
XM_021569426.2 mRNA upstream 64268 66391396 ~ 66401187 (+) False LOC110494417
XM_021569425.2 mRNA upstream 64268 66391401 ~ 66401187 (+) True LOC110494417
XM_036950454.1 mRNA upstream 815479 65610369 ~ 65649976 (+) False LOC110516128
XM_021569442.2 mRNA downstream 31870 66559477 ~ 66566440 (+) True park7
XM_021569435.2 mRNA downstream 39172 66566779 ~ 66687764 (+) False kcnab2a
XM_021569439.2 mRNA downstream 39172 66566779 ~ 66687764 (+) False kcnab2a
XM_021569433.2 mRNA downstream 39187 66566794 ~ 66687764 (+) False kcnab2a
XM_021569434.2 mRNA downstream 39189 66566796 ~ 66687764 (+) False kcnab2a
TU1689604 other upstream 175007 66288872 ~ 66290448 (+) True G1477313
TU1689118 other upstream 682120 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 998688 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 1016942 65418091 ~ 65448513 (+) False G1476569
TU1688655 other upstream 1138292 65325877 ~ 65327163 (+) True G1476520
TU1689884 other downstream 29430 66557037 ~ 66557512 (+) True G1477578
TU1689890 other downstream 151653 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other downstream 189766 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 305965 66833572 ~ 66834940 (+) False iffo2b
TU1690094 other downstream 339918 66867525 ~ 66867880 (+) True LOC110494429

Expression Profile