RNA id: XM_021569434.2


Basic Information

Item Value
RNA id XM_021569434.2
length 5233
RNA type mRNA
GC content 0.45
exon number 17
gene id kcnab2a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 66566779 ~ 66780792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAGTGGGTCTGCAGCAGCGCATGGTGAGTGGCAACGCGGTAAAAACAAGGAGCTGGTGGTTCAGCTTGATGAGCAGAGGATTTTAAACTAAATACAAAGGTAAACGCTAACTAATTGACGAGCAGAGGATTTTTGACAAAAAACAAAGAAGCCCAGTTTGGTGAGAGACAGTCCCCTGTTGTCCCGGTGAGAGAGAGACCCCTTCTGCAGGCTGGCCACATCCCCACCCTCCCGCCTCCATGTATCCTGAATCTACCACAGACTCACCTGCCCGCCTCTCCCGACAAACTGGCTCGCCTGGCATGATCTACAACGCACGCTATGGGAGCCCCAAACGACAGCTGCAGTTCTACAgAAACCTTGGGAAGTCTGGCCTGAGGGTGTCCTGCCTTGGACTAGGAACATGGGTGACGTTCGGAGGGCAGATAACAGATGAGATGGCGGAGCAGCTGTTATGTCTGGCCTACGAGAACGGCATCAATCTGTTTGACACAGCAGAGGTCTACGCCGCAGGGAAggctgaGGTTGTGCTGGGGAACGTCATAAAGAAGAAAGGATGGAGACGTTCCAGTCTGGTGATCACAACAAAGATCTTCTGGGGTGGAAAAGCAGAGACTGAAAGAGGGTTGTCCCGAAAACACATTATAGAAGGTTTAAAGGCCTCACTGGAGAGACTGCAGCTAGAGTATGTGGACGTGGTGTTTGCAAACAGACCGGACCCCAACACTCCCATGGAAGGGATAGCtgAGACGGTGCGGGCGATGACCCACGTGATCAACCAGGGCATGGCCATGTACTGGGGCACGTCCCGCTGGAGCCCCATGGAGATCATggAGGCGTACTCTGTGGCGCGGCAGTTCAACCAGATTCCTCCCATCTGTGAGCAGGCAGAGTATCACATGTTCCAGAGGGAGAAGGTGGAGGTGCAGCTGCCAGAGCTCTTCCATAAGATAGGTGTGGGGGCAATGACATGGTCACCGCTGGCCTGTGGGATCATCTCAGGGAAATACGACAGTGGGGTACCACCTTACTCCCGCGCCTCTCTTAAGGGCTACCAGTGGTTGAAGGACAAGATCTTGAGCGAAGAGGGCCGGCGTCAGCAGGCGAAGTTGAAAGAGCTGCAGGCAATCGCAGAGCGGCTGGGCTGCACTCTGCCCCAGCTCGCCATCGTGTGGTGCCTACGAAACGAAGGGGTGAGCTCCGTCTTATTGGGGGCGTCCAGCACCGACCAGCTGATGGAGAATATAGGAGCAATACAGGTTCTTCCCAAACTATCCTCCTCCATCACGCACGAGGTAGATAGCATCCTGGGGAACAAGCCGTACAGTAAAAAGGACTACCGTTCCTAATGCTTCGCCACCgcgccagtcagccaggactGCTCCAGGGCTGCTCCAGGGCTGCTCCAGGGCTGCTCCAGGGCTGCTCCAGGACTGCTCCAGGGCTGCTCCAGGACTGCTCCAGGACTGCTCCAGGACTGCTCCAGGACTGCAGCGCAGGTCCATGCCCCACCTTTGCCTGATCCTCTGTTTGCTTGAGCTTTACTGAATGAGACCCCGGCGCATGAGTCTGGCCCCACCTCGGCCACCCTGGGGAGCATCATTTAGACTTACAGGGAAAAGAAAAGGAAGATAAATAGATACGTGACCTCCGCAATGGAAGGAAGGATAGGTAGAAAAAATACAGAGGGGGTTAACTAGATGAATCCGTTATACATACAATTCAGCCGAAGCTGCAGTTTAAAAACCGAAGAAAATATTATTtctaaaaaatcaaataaaaagcaCACGCTTGCTTGGCAGACAGATATAATTGTATTTTTGGTGGAATAAAATCTAAATACTGAATGCTTACCAATGGAATTTAAGTTTATACAAATATACAACAAATTCTCTGTTGCACATGTATAGCAACACATTTGTTTTTGGGAGTTCTGTTTCCAATTGCCTGTACATGTCCATAACAGTTTCTCTTAAACATCTGTTTTATTTGTGTGGTCTACATAATCTGTGTACTAGCCTCCTTGCAGGCAGAACAATCAGCACTTTAGTATTGTACAGTTCAGTCATTGAGAGAGGATGAAATAATTAAACCGTCTCACACATGGTCAGTCATTTCAGTCCTGTTTCAGTTTCCTATCTGTTCCCCTCAGTCAATCTGGTCTCCACAGTGCTGGTTCTGCCAGGCTTGATCCTGGTGCGCTGACTAACCCCTAGTCTGAGTCCTACCTCTGAGCTGCACTAACTGCACCAGCCAGGTAGGACTGCCCCCTAGTGGAAGGATTTAGCTCTGCTCTGAGCTCTGCTTCTCTCGTGTGCCAGGTCTGTCATCTGTCAATAAGAACCTTGAGCAGGCTAGTTGATTGCCATAGAAAGGGTTAATTACTGGCCATGTAAAATGATGGCTGTATCTGTATTTACCTTTGTGTGGCAGTGTTACTTTCTGAAGTTTTACTAACTGCATCAGACGTAATGGTCTTAATTGTGCTACTCAGCCAGTTTTACAGACCTCTTTATTAGTCATTTTAGAGCAAATTCTCATGAAAATGGCACATTACCTAAATTgtgctcaatgtgtgtgtgtgtgttgccttatTTAGGCTCATTTTGAGCTGTGCTGGGCTGAGACAGCAGGCCCATAGCTGCCATTGGCCGTCAGGGCACAGACTGGTCTTGAGCCCCATTTATGCCTCGTTCGGATATaaatcctttgtcctgatcttgtccacattctgattgtgcctaCATTTTCAGACCGGTGTAGATGACTAAAATACGCATTGTGATCTTCCTGATCTACTCCGGAGGTAGTGAGGCACgcattgtgtctggatatcttacaaGACAGATCTGGAAAGAGAAACCATTTAAATTATCATTATTCTGCTTTTTAACATCATTGACTGGTGACATTGACCTACGGCATCAATATGTGTTTTAAAATGAATAcatattattttgaaagaataaCTGTCAAATCATTTGCATGCAGGGAGGGACCAGGAAATCTGAGGACACAGTAGACGGATATgagacacattttaataccatgTTTAGATCTATTTCAGAAAATGTGGACACAATCAGATCATGGACAAGATCAGCACAAAGGGCGCAAGTTATGAACAAGGCttgagacagtagttcctggtatATGGAAAGACTCATTGGTTTTAGTGGCAGCTGTTCCTGCCCAATCAGAGTGAAGACTGACGTGTGACATATGCGTGCGAGGCTTGCTAGGAAGAAAGGGCTGGTTTGTGTCAGCAGCTCAGGGATTTGGAACAGGGAATGTGTGTACTTGTTTGTATACCTGGTTAGTGTATTTAGATGTATTTAATGTGTGCGTCTTTCACGTGTGGATGTGGACCTGTCCAATGTCCAATCAAGACATTTTCACGTGGCTTGAGCCAAAGATATTCCAACATCTTTCAGCGACACATCTAAGTGTCTGTCGCTTGTTGGAAGAGTATAGCGACCGACTTAAAATGCGTACTATCTAGCTTATTATCTATGGGCTCTCTTCATGTGTACAGCATAATCACTTGACCATGCTGTTCTATGCTTATacccacatatacagtacacatgcATTGTACACTACTTATGGAATGATCTGTTTATTTTCAGTTGGCAGATGATAATCAATACATTTTCAATAATCGTATACATTGCACACTGAAGACATCTGACGCTGCCCTGGATCAGTATTCACTCTAGCTGTTGGGTCCTCTTACTGTGAGACAAAGTGGAGAGCATGTGATGCATACATCCTCCAGCATGAGCCCTCGTCCCCCAGCCTATGGGGATTATTCTGACAAGCAAGGGCATGCTTACAAGTGGAAATATAAGGAATACTCGCTACCATCTCATTCTCAGATTCAATGATTACAGTTGTATAGTACTGTAGTGTCAGTGAGTATGACAAAATGTAATGGGGGGTGAGGTTTGGATGCTTCTCAGGCAAAGTGAAGAGGTGTGTATGCTTTGCTAGACCCTCTGGTCGGACAACAAATACTTGGCATAGTGGAAACAAATGCTCCTTTTGTTTTTAGCATCTATGAGTTAAATATAAACTGTGTACATTTGATTTGCTGTGTCTGGCAATGTATGTCTGAGTGAATTAGTAGAAAAGGCCAATGTGGTTTTCTCAAAAAAATGGAACTCTGTTTAATATTTGTTCATGATTTTCTGTCTTGTCTtcagcagggaaatgactgaAAAACATTCAGCACCAatgtttaataaataaaatagctCAAAGGCATTGCCACAACGATGAGTGTTTTCCATGGACGTATTTTGGTGGTCTTTGTCACAATATCAATTGAATTTGACATGTACATGCACAGAGCTGTGCACTGATTTGCCTGGTGATAATTGTAATGGTGTTGAGTGCACCTCTAGGCTGCCCTGTAGAGGTTGATGAAAACCACAGAACTCATACATTTTCTGGCTTGCTCCTTACTGGCATATTGGGCTAGGAAAGCAGTATGAGTACTAGTAAAGCACTATGGATTTTTATTGCAGAATTTGATCTGAATATAGTAGTGTGTTTGACTTTAAACAGCATTGATACACCACACATGATGAACTACTGTCCGTATAGGTTTGCTGCATTGTGTCCACAGTAGAACTGGCATTCCTTGGGCTGCTCCTACCATCTCCTGGTCCATTCAAGCCTTTCCAGGAGTACCTGCTTGTCACCCTTGGTGGTctaggacctgtgtgtgtgtaagtcagGCTGTTTAGTGAGTAGACTCATCATTGCAGGGTTAGGGTCTCTGTGTTCCAGTGTGTTTTGATCCCCTGTCCAGTGCCCCCTCCACACAGCCACTGTAACATATTATAGTATTGATGTTACTTTCAGCTCAGACCGCTATGACATCAGACCTGCAGATTAATGACGCTCATCACAGAATTCTGTATGTTAGAGATCATTTGTTTCTGTTCTGGCCTTTCTTTCACCGTGCTGCATTTTCCTCTGTTAATATTGCATCAATGTAAAGATTGACATAAATAAGCAATTTATTATGCATTGTCTTATCTCTTGTATGTACATAGTTTGACCtttttgtatatagttatggtTGTGATCACCTCtgccttttcattttttattttcatttgcGGGCATTGCTAACTGCACTGTGCTTGAATCTGAATTTAGACAAAATGTACAGGTTCGGTCTTTAATAAAATGACaatgaaaaaatatgaatttgaaAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1689882 lncRNA upstream 10260 66556260 ~ 66556536 (+) True G1477576
TU1689876 lncRNA upstream 15070 66551513 ~ 66551726 (+) True G1477570
TU1689814 lncRNA upstream 44365 66521122 ~ 66522431 (+) True G1477510
TU1689673 lncRNA upstream 128334 66430920 ~ 66438462 (+) True G1477377
TU1689677 lncRNA upstream 139240 66427220 ~ 66427556 (+) True G1477381
TU1690071 lncRNA downstream 126157 66813921 ~ 66814333 (+) True G1477751
TU1690078 lncRNA downstream 136062 66823826 ~ 66824068 (+) True G1477758
TU1690081 lncRNA downstream 142026 66829790 ~ 66829996 (+) True G1477761
TU1690055 lncRNA downstream 149943 66837707 ~ 66840370 (+) False iffo2b
TU1690054 lncRNA downstream 150558 66838322 ~ 66840370 (+) True iffo2b
XM_021569442.2 mRNA upstream 356 66559477 ~ 66566440 (+) True park7
XM_036947913.1 mRNA upstream 39189 66465455 ~ 66527607 (+) False pax7a
XM_021569444.2 mRNA downstream 97752 66785516 ~ 66790374 (+) True akr7a3
XM_021569447.2 mRNA downstream 111003 66798767 ~ 66838437 (+) False iffo2b
XM_021569446.2 mRNA downstream 111004 66798768 ~ 66838437 (+) False iffo2b
XM_021569448.2 mRNA downstream 111004 66798768 ~ 66838437 (+) False iffo2b
XM_021569449.2 mRNA downstream 111004 66798768 ~ 66838437 (+) False iffo2b
TU1689884 other upstream 9284 66557037 ~ 66557512 (+) True G1477578
TU1689604 other upstream 276348 66288872 ~ 66290448 (+) True G1477313
TU1689118 other upstream 783461 65781779 ~ 65783335 (+) True G1476898
TU1688719 other upstream 1100029 65418091 ~ 65466767 (+) True G1476569
TU1688718 other upstream 1118283 65418091 ~ 65448513 (+) False G1476569
TU1690012 other downstream 29609 66717373 ~ 66718688 (+) True G1477697
TU1690057 other downstream 145808 66833572 ~ 66834940 (+) False iffo2b
TU1690094 other downstream 179761 66867525 ~ 66867880 (+) True LOC110494429
TU1690884 other downstream 974223 67661987 ~ 67663649 (+) True G1478504
TU1692079 other downstream 1434774 68122538 ~ 68125780 (+) True G1479621

Expression Profile