RNA id: XM_036950486.1


Basic Information

Item Value
RNA id XM_036950486.1
length 8563
RNA type mRNA
GC content 0.51
exon number 39
gene id LOC110494438
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 67038010 ~ 67086398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAACGACGTAATTTTGGCGGTTATTCAAACCCATTTTGACTTAGATCGATTGTCTTACTGGATACATGATTACGTTGCATTGAATCAATTTGAAACGACATGCAAAGTGGGGACTCGCGAGGGGATTGAATCCCCCCACTCCCCATACCCTGGTGTAACCTCAATTTCTTTGGACTTGCTTGGGAAAATGGGCAAAGCGACAGGCTGGTGGTGCACACAGTGGCATTGCTACTTGCAGCACTGCTCACGACTAGTAAAAGTAGTAACTAGGAGAGCATGCCTAACTAGTTGTGGTGAAAATTATGGGATGGATTGTCATGGCAACAGACCAGACGTCACAATTTGTGCATGTGTTCCATTTTTGTCTTTCTTATTTTCAGACTGGAGGACTTAGATAGTGAAGAGTGGAAAAGGAAACAGATTTTTCCCAACAAAAAGAAGGAAGCCATCTTTCTTGAAAATAAATTGTATTTACACAAGTATCATACAATTATTTTCCGGGAGGCACGAAGAGGTGAACAGTGGCAATTTCAGGGTTAACTTTCAGAGAGGTTTTTTTTGTATGCGATAAAGATGCCTGGGTCGTTAAGCAATGAAGACGAGGGACAAGACGACATGGATTTTGAAGACGAGATACCAGatgaggatgaggagggtgaacacaacactgtcccgCTCACATCTCTGGACAGCTTCTTCTCTGACGACGACTCCCTCAaacaacagaagaagaagaaacctaAAAAGATGAAGGAGGGCAAGATGCCCAAAGTCAAGAAGAGGAAAAAGGAGggaggaggaggtggcggAATAGGAGTTGGTGGCAATGACCCAGAGGAGCAGGCCTCAGAGCGGGAGGATGACCATCCACTGCAACGTCCAGAGATTGGCTCAGAGAGCGAGAGCAGCACCTACGCCCCCGCCCCCaccacaaagaagaagaagaagaaaccaaaggagaagaaagagaagaaaccCAAacggaagaagagagaagaggaggaggaggaggatgacgatgatgatgacgacgatgatgatgatgatgaaaatAATAAGGAGCCCAAGTCATCCAGCCAGCTGATGCAGGAGTGGGGTCTGGAAGATGTGCAGTATGGCTTCACAGAGGAGGACTATACAACCCTCACCAACTACAAGGCTTTCAGCCAGTTCCTCAGGCCACTTATTGCCAAGAAGAACCCTAAGATCCCCATGTCAAAGATGATGACAGTGTTAGGGTCCAAGTGGCGTGAGTTCAGCGCCAACAACCCCTTCAAAGGCACCTCCGCAACTGCTGTGGCTGCCGCGGTGGCTGCTGCTGTGGAAATGGTCACTGTGGCCTCGCCCATCTCTGTCAAAGAGGTGACTACCCTACCAAGCTCTCAGCCTGGGCCAATCAGAAAAGCCAAAACCAAAGATGGAAAGGGGCCTGGGGTAAGACGGAAGACAAAGACTGTAAAGGAGGTGAAGAAGAAAAGTAAAGGGAAGAAGACCAAATCAAAGAAGAAAGCATCCTCGAGTGAAGAGGACTTTGGGCTGGAGGAGTCGGACTTTGATGATGTCAGCATCCACAGTGCCTCAGTGCGCTCTGATACCTCGGGGAATGCCAAGAAGAAAGCCCGGAAGGGTCGGAAAAAAAGGAAAAGAGAGGATGGGGACGGCTATGAGACAGACCACCAGGACTACTGTGAGGTGTGCCAGCAGGGAGGGGAGATCATCCTGTGTGACACCTGTCCCAAAGCTTACCACCTGGTGTGTCTGGACCCCGAGCTGGAGAAGGCCCCCGAGGGCAAGTGGAGCTGCCCCCACTGTGAGAAGGAGGGCATCCAGTGGGAGGccaaagatgatgatgatgatgaggaggaggaggttgcGGTTGAGGAAGAGGATGACCACCTGGAGTTCTGCAGAGTGTGTAAAGATGGAGGGGAGTTGCTGTGCTGTGACACCTGCCCCTCCTCCTATCATATCCACTGCCTCAACCCTCCCCTGCCTGAGATACCCAATGGGGAGTGGCTGTGCCCAAGGTGCATGtGCCCACCTCTGAAGGGGAAGGTACAGAGGATTCTCCACTGGACTTGGGGGGATCCCCCTTTACCCACTGAGGTGCTCCCTGGCCCTGATGGAGAGATGGTGGACCCGCTGGTCAAGCCCCCCCTGAAGGGCCATCCGGAGAGGGAACTGTTTGTCAAGTGGGCTGGTCTCTCCTACTGGCACTGCTCCTGGGTCAGCGAACTACAGTTAGAGCTGTACCATGCGGTGATGTACCGTAACTACCAGCGGAAGAACGACATGGACGAGCCCCCTCCGTACGACTACGGCTCTGGGGAGGAGGAGCTGAACAACGAGAAGAGGAAGAGTAAAGACCTGCAGTATGCTGCCATGGAGGAGAGATTCTACCGCTACGGCATCAAGCCAGAGTGGATGGTCATCCACAGGATCATCAACCACAGTTATGATAAGGATGGAGATGTGCACTACATGATCAAGTGGAGAGACCTGCCCTATGACCAGTGCACCTGGGAGGTGGATGACTTTGACGTCCCTGAGTATCACCACAGCAAACACTCCTACTGGGACCACAGGGAGCAGATGATTGGTGATGACCAGCGCCCCTTAGTGGTGAGAAAGGGAAAGAAGGGTAaagatgaggagaagaggagggagagagaaatccCCCCTGATGCCCCAATTATAGATcCTACCATCAAGTTTGAACATCAACCCTGGTACATCAATGCCACTGGGGGCACCCTGCATCCGTACCAGCTGGAGGGTCTGAACTGGTTACGGTTCTCCTGGGCACAGAGCACAGACACTATCCTGGCAGACGAGATGGGCCTGGGCAAGACTGTCCAGACCATCGTCTTCCTCTACTCACTCTACAAGGAGgGTCACTCCAAAGGGCCATACCTGGTCAGTGCCCCCCTGTCCACCATCATCAACTGGGAGAGGGAGTTTGAGATGTGGGCCCCAGACTTCTACGTGGTCACTTACACTGGGGACAAAGATAGCCGAGCGGTCATCAGGGAGAACGAGTTCACTTTTGAGGACAGTACAGTCAAGACAGGCCGCAAGGTCTTCCGTATGAAGAAAGATAGTGCCATCAAGTTCCATGTGTTGTTGACATCATATGAGCTGATTACCATTGATCAGACCATTCTGGGCTCCATTAACTGGGCCTGTCTGGTGGTGGACGAGGCCCACAGACTGAAGAACAACCAGTCAAAGTTTTTCAGAATCCTCAACGGTTATAAGATCTACTATAAGCTGCTACTGACTGGCACTCCTCTGCAGAACAACCTGGAGGAGCTGTTTCACCTGCTCAACTTCCTCACCCCAGAGAGATTTAATAACCTGGAGGGCTTTCTGGAAGAGTTTGCAGACATCTCCAAGGAGGACCAGATCAAGAAGCTGCATGACCTGCTGGGCCCACACATGCTCAGGAGACTGAAGGCTGATGTCTTCAAGAACATGCCTTCCAAGACAGAGCTCATTGTACGAGTGGAGCTCAGCCCCATGCAGAAGAAGTACTACAAGTTCATCCTGACGCGGAACTTTGAGGCGCTCAACTCCAAGGGCGGGGGCAACCAGGTGTCCCTTCTCAACATCATGATGGACCTGAAGAAGTGTTGCAACCACCCCTACCTGTTCCCAGTGGCAGCCATgGAGGCGCCAGTGTTACCCAATGGCTCTTATGATGGGAATCAGCTGGTCAAGTCCTCAGGCAAACTCACCCTGCTCCAGAAGATGCTGAAGAAACTCAAAGATGAAGGACACAGAGTTCTCATCTTCTCGCAGATGACTAAGATGCTGGATCTGCTTGAGGACTTTCTGGAATACGAGGGCTACAAATATGAACGCATCGATGGAGGCATCACAGGGGGGCTACGACAGGAGGCTATCGACCGCTTCAATGCACCGGGCGCACAGCAGTTCTGCTTCCTGCTCTCCACCCGAGCTGGAGGCCTGGGCATCAACCTAGCCACGGCAGACACCGTCATCATCTACGACTCAGATTGGAACCCTCACAACGATATCCAGGCATTCAGCAGGGCCCACCGTATAGGTCAGAACAAGAAGGTGATGATCTATCGCTTCGTGACAAGGGCCAGCGTGGAGGAGCGTATCACCCAGGTGGCCAAGAGGAAGATGATGTTGACCCACCTTGTGGTGAGGCCCGGCCTGGGCTCCAAAACCGGCTCCATGTCCAAACAGGAGCTGGACGACATCCTCAAGTTTGGCACTGAGGAGCTCTTCAAGGATGAGATGGAGGCGGCCGCTCGGGCCATGGGTTCCCACCAGAAACTGTGGGACATAAAGGATGGAGATGAGGGCAGTGTCATTCACTATGATGACAATGCCATCTCCAAGCTGCTGGACCGTAGCCAGAATGCCACGGAGGACACTGAGATCCAGAACATGAACGAATACCTCAGCTCCTTCAAGGTGGCCCAGTATGTGGTCAAAGACGAGGACGCGgagGAGGAGCCCCAGCGGGAGATCATTAAGCAGGAGGAGAATGTGGATCCAGACTACTGGGAGAAGCTGCTGAGGCACCACTatgagcagcagcaggaggaccTGGCCCGTAACCTGGGCAAAGGCAAACGCATCCGCAAGCAGGTCAACTACAACGACACGTCTCAGGAGGACCAAGAGTGGCAGGATGATCTTTCAGACAATCATTCCGAGTACTCCGTGGGGTCCGAGGACGAGGACGAAGATTTCGAGGAGAGGCCGGAAGGTGGGCGCAGGCACTCTCGCAGACAGCTGAAGAGTGACAGGGACAAACCTCTGCCACCCCTGCTGGCACGCGTAGGGGGCAACATCGAGGTGCTGGGGTTCAACACCCGTCAGCGGAAGGCCTTCCTCAATGCTATCATGCGCTGGGGCATGCCTCCTCAGGACGCCTTCAACTCTCACTGGCTGGTCAGAGACCTGAGAGGGAAGAGTGAGAAAGAGTTCAGgGCCTATGTGTCCCTGTTCATGAGACATCTTTGTGAGCCGGGGGCAGATGGAGCGGAGACCTTTGCAGACGGTGTCCCACGAGAGGGCCTGTCCCGCCAACATGTCCTCACCAGGATCGGAGTTATGTCTCTGGTCAGGAAAAAGGTCCAGGAGTTTGAGCATGTCAATGGAAAGTACAGCACTCCAGACCTGATCCCACTTGGACTAGAGTTGAAGAAACTGACTGAGAGTCTGTCCTCTGACCCCAACACCCCTGTCCCTGCCAGCCCTGCAGCCACACCCCAGCCTCCTGGCACTCCTGTCCCACCAGAGAAGATGGACTCAACCTCAGGGCCTACTGAAGACAAGGAGACCACAGAATTAGAGTACAAGAAGCTACCAGAACTGGAGGTAGAGAAGACGGACAAGGCTGCTGACAGGGATGAGACAGTGAAGTGCAGCACAGAGGACAAACCAGTCTCCTCAGAGGAGAGTAGTGAAAGGACAGGCACACCCTCCACACTTCCAGAGCCATTCACCAATCCTAAAGAGCCTCCATCCAAACAGACAGAGCTGTCCTCCAATCAAAGCTCACCAAAAGCGGAGCcttgtagagagacagagaagtctTTAGATAAAGGAGACAGTGATAATGCCCCAGCCAAACCTGAGGAAAAGGAACTGAAGCCAGTTTTTTCAGACGAGCCCAAGAGCGAGGACATGCCAGTGCCCGAGGGCAGGCTTAATGGTGAGAAAGAAGCACAGGAGGAGACGGAGGACAtcaggagggaggtggagaagaaCGGCTTCAAAATGAGGTTCATGTTCAACATCGCCGACGGAGGCTTCACAGAGCTACACACCCTGTGGCAGAACGAGGAGCGGGCCGCTGTGTCATCTGGGAAGATGTATGACATCTGGCACCGTCGCCACGACTACTGGTTGCTGGCTGGCATCGTAACACATGGCTATGCCCGCTGGCAGGACATTCAGAACGACCCACGTTATGCCATCCTCAATGAGCCCTTCAAGACTGAGATGCACAAGGGGAACTACCTGGAGATGAAGAACAAGTTCCTGGCTCGTCGCTTTAAGctgTTGGAGCAGGCTCTGGTGATAGAGGAGCAGTTAAGAAGGGCAGCGTACCTGAATATGACCCAGGACCCCAACCACCCGGCTATGGCCCTGAATACCCGCTTTGCTGAGGTGGAGTGTCTGGCTGAGTCCCACCAGCACCTGTCCAAGGAGTCTCTGGCTGGAAACAAGCCAGCCAACGCTGTGCTGCACAAAGtaCTGAACCAGCTGGAGGAGCTGCTGAGTGATATGAAGGCAGACGTGACGCGGCTTCCCAACATGTTGTCCCGGATCCCCCCGGTGTCTGCCCGTCTGCAGATGTCTGAGAGGAGCATCCTCAGCCGCCTCACCAGCCGCGGCAACGAACCTCCGCCCCAACAGCCGTTCGGCCAGAGCTCATTTGCCTGTTCCCAGATGTACAGCACTGGTTTTGGGGGCAGCTTCCGGGGGCCTGCGGGAGGAGCCATGGTCAACTACAGCCAGATGCCCCTGGGACCCTACGTCAGTGTGTCCAACGGCCCCCCACCCCCGTCCAGCCACCTGGACAAGAAGTCCTGCGACCCGCTGAGGGACGTCAACACCCCTGACCTCAAGTCAGGCAAGCCCAGTGATGTCATCTGTATTGAAGATTAGATCAGCTATCCCAAAATTGATCTGGAGTCAGCCAAGCCCAGGGATGTCAACTATTATATAAATGATTACAGaatcttctccccccccccccccccttcctcatcctcccctcctgtaAGAAGCTCTCTGTCTATGGATCAGAGGATAAACCTAGGAATAATACACAGATGTATTTATCTATCGTATGAATTGCACTTCTATCTTTCGAGGATTCTACAACATACTTCATGCAGTAGCTATTTGCTTTTATGACTTAGGTTGGTGAGTCAAGCAGAGGAACTGTCTATTATGATGTGAGAGTCAAACGACCTCAGACGCCCGGCTTCTGCTAACTGACACGTGGAAGGGAAGTGATCTTATAGAATGACTGGAACCGCCCTGTCTGAAGGGGAAAGTATTGGCTACAGGAAGAGCTGCAAAAAGTGAAAGTACACATGGTGGATGAGCCGGTGGAGGTGCCAATGCTCCGGATCTGCTGTAATGAGAATCATCTGTGTCTATTAATTGACTTTAGGCCTGGCTCTGCTCCTTCATTCTGGGTCTTTTCCTTCTGCGTTCATCTTTTGCCTATTCTTTGTGCATCGGGACCGACCTCTGCTGGAGCAGTGTGCTTTAGCTACGTACACATAGAAGGAAAATAGAACTATGAAGGCATACGGCTCCCATCCTAGGATAATAGAGATCATAAGTGGGTGCTGATACGGCAGCCAATTCTCTCATTATGTTTACTACGTGTTTGTTTTATGGCAGAGCCTTGAGTTGGAACTTGTAAGAATAAGCGTGACTTTAAGGAAGTACAGCTACACTATGCCTCAACCCCTAAAGACTGCCATCTCCCGCCTCTGGAGAAAGGGATCCTAGTTACAGAGCTGCATTAGCTATTAATATACTAAGGGGTTCTCCCTTGTAATGTACATAGTTCAAGAGACTGCTGTTTATTTTGCCTTGCATTGTCATTGTGAATTTGACGCATACATGCATAAAACTGTAACAGGCTGGATTAGTGCAAAAAGTGAAGATCACATAGAAGTTACTAGCCTATTTCTGCAAATGTACATGTATTTCTTTAATATTTGAATGTGATTATTGGCCAACCTCCGGGGCCATGACTAGTGTGTGTTATAAACAGAATTTCCTCCTGTCTGTCATATGGTTGGGATGTCAAGCTAACTGTGTACTGGACATGGTGCTGGATGGGAGTAATTATGTTGCCTTTAACACATACAAGTTATTGTGTTATAGTTCCCCAAAgcgcctccttccctccctcttccattGTGAGAAATTAAAAACTAAAAAGTGCTTATGACACTACGTCACCTTTTGGCCTAGGTTTCATGTTTTCCATGAAATGTGCGTTATTGTGTGTGCTTCTTTTTAAGGTAAAGTGTTATTTCAGAATGTACTGCTTTAGTGCCACTTAAAGAGGTCTGCTCACTCCATGGCCCTGATGGCTAATGTCCCAGATTGTATGCTTGATAATCTTATAAATGGGTGGAATTATTTCCATTGAGAACTGAGGGCAGTGGTTGAATAAGATAGCTAATTCAATCATCAATAGATTATAATCTTCATAGAGTTTTTGAGGACCAAGGTTGGATAGCCATACAGTAAAAGTATCAAAAGCTGTTtttgttttcttgttttttaatgttttgttttaTATAGGTTTCTTGGAAGGGAACTGTTTATTGCATTACATGTTGTGAGGACTAAACTGTATCAGAGCGACAGCATGGATTCACTTGACAATAATTTTTATTCCATCTGTCTGCTAATGTGATTGTCCAAAGTGAAACTACCTTTTTATATGTTCAATGAGACTTAATTTGTTGAGATTTTTCATGAATGTGTGTATTACATTTACTCATTGAAAACCTTAAAGgccccagtgcagtcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1690377 lncRNA upstream 19604 66919719 ~ 67018407 (+) True G1478035
TU1690433 lncRNA upstream 24058 67012546 ~ 67013953 (+) True G1478081
TU1690407 lncRNA upstream 70779 66961151 ~ 66967232 (+) True agtrap
TU1690373 lncRNA upstream 123777 66913913 ~ 66914234 (+) True G1478031
TU1690371 lncRNA upstream 126370 66911306 ~ 66911641 (+) True G1478029
TU1690448 lncRNA downstream 895 67087293 ~ 67087472 (+) True G1478095
TU1690447 lncRNA downstream 2909 67089307 ~ 67090518 (+) True G1478094
TU1690457 lncRNA downstream 110560 67196958 ~ 67248760 (+) True arhgef10la
TU1690696 lncRNA downstream 330315 67416713 ~ 67422808 (+) True G1478323
TU1690783 lncRNA downstream 447721 67534119 ~ 67534397 (+) True G1478405
XM_021569467.2 mRNA upstream 2181 67029457 ~ 67035830 (+) True LOC110494437
XM_021569462.2 mRNA upstream 70820 66961091 ~ 66967191 (+) False agtrap
XM_021569476.2 mRNA downstream 5117 67091515 ~ 67199623 (+) False arhgef10la
XM_036950490.1 mRNA downstream 5117 67091515 ~ 67199623 (+) False arhgef10la
XM_036950492.1 mRNA downstream 5117 67091515 ~ 67199623 (+) False arhgef10la
XM_036950493.1 mRNA downstream 5117 67091515 ~ 67199623 (+) False arhgef10la
XM_036950491.1 mRNA downstream 12621 67099019 ~ 67199623 (+) False arhgef10la
TU1690094 other upstream 170131 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 203071 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 257219 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other upstream 319323 66717373 ~ 66718688 (+) True G1477697
TU1689884 other upstream 480499 66557037 ~ 66557512 (+) True G1477578
TU1690884 other downstream 575589 67661987 ~ 67663649 (+) True G1478504
TU1692079 other downstream 1036140 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 1847928 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 1908234 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 3564545 70650943 ~ 70656057 (+) True nampt2

Expression Profile