RNA id: XM_036950491.1


Basic Information

Item Value
RNA id XM_036950491.1
length 6539
RNA type mRNA
GC content 0.51
exon number 28
gene id arhgef10la
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 67091515 ~ 67248760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTGCACTATGAGACTTCACCAGAACTCCAGGACTCAGGAGTGGTGCTCTGCTAAGGATACAGAGCCGCCCTCTACATGTAGGGAAACCCCCCCCAGCTATGAGGTTGAGGTATTTAGGCCAGACACGTTGtatgtagtgagaggaatacccTATTAAAATGACAAAAACAACGCGTATGGGCACATCACCGTCAGGGTATAGATGTCTCCTTTAATCTTCAGAGCTTATGTCCACTGTGAATTATCAGCagcaacagagggaggaagaggaggaggaggaagatgaagagcAAGGAGAGAAGTTTGAGTTTGATGACAGTGCTGATGAGAAAGACCCAGTGGAAGCCATGCAAACGGCAAACAAGTCATCTATGGAGGCCACAAGCCAACCACAGGACAATGCAGTAACAACACCCCTTGCACACTCACAACAGCACCTCAATGCACTGCCCCCTGCTGGTCAGGAGGACAATCCCTCACAGGGACAAGACTCCACGGCCTCTTCAGATGTTCCAGTTAGCAACCCACCCAGGCGGGTCTCTGGCCCAGTCGAGCTGGTTGAGCCCATCGCTGCAGCACCTTCAGTGGGAGAGCAGCCCCGGGAGGAGTCCCAGGAAAGGTCTGGTCCTGGAGACATGTTACCAGTGGAGAACCAGACCGATTCGGAGGACCATAGCGTGGAGACTGAGAAGAAGAGCTCCAGCTTGAGAGAACACTCTGAAGaaggccagtatcctggagtcgcctcttcactgttgacgttgagactggtgttttGTGAGGGGGTGGATGATGATGAGGCCGATGCAGCACTCCAGACAGGGAGCCCGGAGGTGATCTATGATGACGTGCCCTGTGAGGGACCACTCTCCCCGGACGAAGgggACATGATCTACGAGGATGTGCACAGAGAAGAAATGCCCCAGGGTGCAGGCAATGGTTGGAGCTCCAGTGAGTTTGAAAGTTACGACGAGCAGTCTGATACCGAGAGCAAGCTACCAACCCGCAGCAAGCAGTACTCCCCTGACGTGCGTCGGCTGAGGGAGCGTTGTGCCAGGACCAAACGTGAAATAGCCATGAGGCTGGGTGGGAAAAACAACTATGACACCAAGGTTCACCAGCTAATGAAGGCCGCTAGAAGTGGGACCAAGGATGGATTGGACAAGACCAAAATAGCCTTCATGCGGAGAGTCTCCTTCCTGCACAAGAAGGACCACTCAGAGGATGTGGAGGATGATGCAGGGTACCTGGATGTGGCTGTGTCGGAGGTGAAACAGCCTCCTGCACAGCTGAGCCCCATGCCTGAGGGGCTGAGCAGCCagcagGTGGTCAGACGCCACATCCTGGGTTCCATCATTCAGAGTGAGCGCAGTTATCTTGAGTCCCTCAGGAGAATCCTCCAGGAGTACCAGAGGCCCTTGCTAGAGGCGGACCCACGCATCCTGAGCCCACGGAAGATCCGGCCCATATTTCACCGTCTACGGGAGATCACTCAGTGTCACTCCATGTTCCAGATCGCACTGGCATCACGTGTGGCTGAGTGGGACAGCAGTGAGAAGATTGGGGACCTATTTGTGGCCTCGTTTTCCAAGTCCATGGTGCTAGATGTTTACAGTGACTATGTCAATAACTTCACCAATGCCATGGCCCTCATAAAAAAGGCATGCATGTCCAAACCAGCTTTCCTGGAATTCTTAAAGAAGAAGCAGGCGTCCAGTATTGATCGGATCACCCTGTACGGCCTCATGGTGAAGCCCATCCAACGCTTTCCCCAGTTCATCCTATTACTGCAGGACATGCTGAAGAACACACCTAAGGGTCACGTAGACCGCCTGCCTGTGCAGCTGGCTCTGACTGAACTGGAGATGCTGGCCGAGAAGCTGAATGAACAGAAACGTGTGGCCGACCAAATAGCTGAGACTCAGCAGCTAGCACGCAGTGTCAGCGACCGCTTGCTCTGCAAGCAACTGAACTCAGACCAGGGGTCACTGGTGCTTTGTGAGACGTTGATTGAGACGGTGTACGGGGAGCGTGGCCAGGTCCTGAAGTCTAAGGAGCGCAAAGTCTTCCTCTTCAACGACATACTCATCTGTGCCAACATCAACATCAAGGGGCCCCCTGATATCAGCAGCCTGGTCCCTGTTGGGCCAAAGTACACAATGAAGTGGAGTGCCCCCCTGCTGCAGGTCCAGGTGGTGGAGGTGGGTCAGGAGACCTCCCAGGCCAAGGATACCTTGTTCCAGCATGGCGGTGCCAAGCACCCTGGCAGTGCCTGTCCCCCAGGGAAGGTGATCCTGGGTCCTCCTCGGCTCTACCAGGAGCTCCAGGAGCTGCAGCACGACCTGTCTGTGGTAGAGGAGATCTCACTACTGGTGGGAACGCTACAGGGGACATACCAGAACCTGAACACGACCGTGGCCCAGGACTGGTGTCTAGCTCTCCAGAGACTCATCCGGATCAAGGAGGATCAGATTCAGAGTGCCAACAAGTGCCGCTTACGCCTGCAGGTGCCTGGAAGACCAGACAAGTCGGGACGTCCCGTCAGCTTCATGGTGGTTTTCAacacccccagtcccctcagCAAGATCTCCTGGGTCAACCGGCTGCACCTGGCCAAGGTCGCACAGCGAGAGGAGAACACACCAGGATGGTTCTGTGCAGAAGATGAAGGGAAGACCATGGCACCATTTTGGCCTTTACTCACCTGCCGTGTGCTTGTCTTCGCCACCAAATCCTCGGACAGGAAGCTTGAAGCTGCCCTTCACAATCCGGTGCAGTGTGCTTTGCTGGGCTTCTCTGCAGCGAGCACCTCGCTACCTCAAGGCTATCTCTGGGTGGCCAGTGGAGGAGATGCTACCCAGGGGCAGGTGGAGATCTTCTCCCTGAACAGGCCCACACCACGCCCAGTGAAGAGCCTCCAGGTGGGGGCCCCAGTGAGGTGTCTGGAGTATGTGCCTGAACCCAGCACCccagaggagatggaggctgtGGCCCTCAGGAGCCCTACTGGGGTGGGGAACACCATTTGTCTGGGACTGGATGATGGAAGCATCCTGGTGTATGGCAGTGTGGACACTGCAGCCCAGTGCCTGTTGACCCTGTGTAACCCTCAgcgctgtcctgtcctgtgcctCAAACACTCCATCAACTTCCTGTTCGCTGGGCTCAGAGATGGAACCATGATGGTGTATGGACGAAGTAATGGTGGTGAGCTGTGGGAGCCAGACACCTGCAGGACTGTGAGTGTGGGCCCGGAGCCTGTGCGAACTCTTCTGGTACTGGAGGACTCTGTGTGGGCCAGCTGTGCCAACTCTGTGACGGTCATCAAGGGCTCCAGCCTTTCCACTCAGaGGTTTGAGGTGCACCCAGAACCCATGGTGAGCGTGGCCCATATGGTGCGGGCTGGAGGAGGAGTCTGGATGGCCTTTAGTGAGGGCTCTTCTATTCGCCTGTTCCACACTGAGACACTGGAGCATCTGCAGGAAATCAATATCTCCACACGAGTATCTTTGCACAACCCAGGCCAGAAGAGCATGCGTGTCACCAGCCTGCTCCTCTGCCAGGGGCTTCTGTGGGTGGGGACTGCCCAGGGAGTCATCATCACCCTGCCCGTGCCCAAACTGGAGGGCATTCCCAAAATAACAGGAAAAGGGATGACCTCTCTGAATGCCCACTGTGGTCCGGTGGACTTCCTGGTGGCCACCTCCAGCACCCTGTCCGCAGAGCTGCTGAAGAGGGACTCTGTGGGGGATGGACCCGACTCTGCCTGCGGAGGGGAGGACCGCAGTGACTCCTCCTCCCAGGAGTCTCTTCAGCAGTCAGGCTGCTCCCAGGGGGAGGGGCGGGGCAAGGGGCGGGGTGTGCTGCTACAGTACAGGCTACGCTCCACGTCGGGGTTGCCGGGGCCAGCACTGACGGCACGGGGCGACGAGGCGTCTGACTCCTCTCTGGAATCTCTGGAACAAAGACTGGAGGACGGCTCCATCTATGAGCTCAGTGACGACCCTGAGATGTGGGTGCGGGGGCGCCCCTGTGAGCGAGATAGGGGGCGTAGGGACAGGGTGACCTCGGCCGCGGTCATATCCGGGGGCAGGGGCTTCCAAAGACTGAGGGAAGGGACAGCAGAGCGCACAGGTGTGGAGTCTTCAGAAACAACCCtgatggtatggcaactgccacTAACTGTGTGACCTGGACATCAACATTCAGGCAGTGTAGAGTGGAGAAACAGCTCTTTATCCCAGCCCCGAATCCTCTCcattcaataatgacaggaactTGAACCATGTGAGAGAAGTGTATTAGTGCTGGCACAGAGCACAAGGCCAGGCAGATGGCTCCTTGTGTAGGTTCAGGAACTCCTGCATGCTCCATCTGAGGAGACCTGCTGGTGGCCTGTGAGGCATGGGGCACTGACATCCCATTGGTGGCTCTGTGTGTATCCTATTCCTCAGCCACAGGCCCAGGGCATTTCTTGTGACAGCTTAAACTAGTACTCTCCCCACCTTGCCAAAATGGATATCCCGAAATCTAGCGTCATTAGACTGACTGTGCTCACCTCACACACATTTATCTCTCACAGTTGACAGCATTCCCCTGTAACAATGGACCACATTCCTTTGAGAGCGACCGTTTGTTGAATTTACCATGCTGCAGTGCTGGAGATGGACATCTTTTATCTGATCCTTTGGGAGAGAACCCATCAGTTTAGAGCTGAGAAACTACTGTTGGTTTACGAAGGACTTATTTAGTTCTGTTAGTTCAGTAAGCCTCGTTCTCACTCCCTGGCAATGTGAAATATGTGAAACGTCTGTCATAGTGTGTCACAATTGAATCTGTGCCTCTAGGAAATTAAAGTGTGTTAGACACTGACTGTGAGTCCTTAATCGTCTGATGTTTTACAGTATACTGCATAAATAGGCGGGTTAGCTGAGGTATCATTGACAAGGAGGattcctgagagggaatagaagGCAGATGTGTAATGGTCTATCGCAGTTTAGAGGTTTTAACTTTAAATGTTCCTACTCGAATTACTGCAAAATGCAAAACAGATACCATACTGTAGATCTTTATTGTCGATGACGAAGACATTGTACATTGTTAATTTTAAGTTAGTTAAGCAAACACATAGGCTCACAATTATTTAACCTTTGTTACACATCAAAAAGCCTGCTGAATTAACTACAAAATGCAACAACAACTGCAGCCACCAAGACATCATTAGGTGCTGTGTATAGGCAATCGGAGGGGAGAATGCTTCATATGGGGTTCTGTGGCAATTTAACACACGCAAACCTTTGATAAATCTATCCCCTAGTAGCATttctgtctcctttccttcacttACTTTGTGAAGCCATTGCCATCGGTGGTCTGGTGTGCTAACAGAGACATGGTATTATCCTGCCCTGTTCCTGTTTCTATTCTTCCACAATGGAAAAGACCTTTGACAACATCTTTGAAAAGTGTTCATTTACAAATTAATTGAGATGTTTGGCTATGAATGCATGGCATTGAAGTGTTCTTTTAAATTGCCTCTGCTGCTGGATGGAAGTGATGGTTGATTACATATTTTGTCACGACTTCTGTAGAATCTGTTAATAATTCCAGTTACATCTCCACATCTGAGTACTCTATTTCATCCCAGTTGAAGGCCATGCTTTCTAAGGTTTTGAAACATTCTTTGTCATGTTACTTAATCTCCCCGGCATTGACAGACAGCAGCTTTTCAATAGAAAACACAACTCAATACAGAGCGTTGAGGTTTTTCCATCCAAACGTACACATGAGAAAAGCTGTTTAAAGCATACTGTCAAAAACCACAGGACCTATTTAGTGTTTCTATGATAATACTATTCCACAACACTTTTCTGGAGGTCACCAACAAGTCAAGGTTATTTGGATTTAGCCAGAGTGTACATGAGGGTATGATTGAGTAACCTTTATGTGGTATAGATTATTCATCCACAAACACTACCTGTATGTACAACAATTGTTTCAGTGGTTTGCCTTTCCCACTGCTGGGGTGTTTGCTCAGACGTTATTGCACCCTATATCTTAGTGTGTTTCCACTCTCTCATCCTTTCACACTCATTATTATTTGATCTATTCAAACTCCTAAATGGAGATTGTCCATTATAACTTCACACTCATACCGACCATACTGTTCTTATAAAACCGATTTGTGCAGCTTCATTCACATAACTGAAAAGAATGCGCACTTATAATACTAAAGACTTCGACACCCCTGTGGTAGAGGAAGAGGCTTGTGTTGAGTCGGCTGGGTTAACTTTTGATTATGATGAAATAATTATGTGACTCAGTTGTGTACGTTGATAGAGTGAGAAGTCTTTAACATTAGATTAATAATGTTAAGTTACATTGCACATATAAAACATTGCTTTTCTCCATTACATGTCAATTCCAATGTCCTATTGGTACGTTAATAAATACATgcttacatactgtactgtaaaaGTGTTTCATCATTCATGTGTAATATGTCAATGTTAAATAAATACTTCATAGTGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1690447 lncRNA upstream 8501 67089307 ~ 67090518 (+) True G1478094
TU1690448 lncRNA upstream 11547 67087293 ~ 67087472 (+) True G1478095
TU1690377 lncRNA upstream 80612 66919719 ~ 67018407 (+) True G1478035
TU1690696 lncRNA downstream 217090 67416713 ~ 67422808 (+) True G1478323
TU1690783 lncRNA downstream 334496 67534119 ~ 67534397 (+) True G1478405
TU1690936 lncRNA downstream 548837 67748460 ~ 67748694 (+) True klhdc7a
TU1690734 lncRNA downstream 553733 67753356 ~ 67754494 (+) True G1478356
TU1690938 lncRNA downstream 556500 67756123 ~ 67756335 (+) True G1478558
XM_021569471.2 mRNA upstream 12621 67038010 ~ 67086398 (+) False LOC110494438
XM_036950494.1 mRNA downstream 268793 67468416 ~ 67743756 (+) False LOC110494440
XM_036950495.1 mRNA downstream 268794 67468417 ~ 67743756 (+) True LOC110494440
XR_005037054.1 mRNA downstream 498217 67697840 ~ 67698871 (+) True LOC118940488
XM_021569479.2 mRNA downstream 548198 67747821 ~ 67752755 (+) False klhdc7a
XM_021569481.2 mRNA downstream 575751 67775374 ~ 67784857 (+) True dhrs3b
TU1690094 other upstream 231139 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 264079 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 318227 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other upstream 380331 66717373 ~ 66718688 (+) True G1477697
TU1689884 other upstream 541507 66557037 ~ 66557512 (+) True G1477578
TU1690884 other downstream 462364 67661987 ~ 67663649 (+) True G1478504
TU1692079 other downstream 922915 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 1734703 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 1795009 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 3451320 70650943 ~ 70656057 (+) True nampt2

Expression Profile