RNA id: XM_036950495.1


Basic Information

Item Value
RNA id XM_036950495.1
length 3042
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110494440
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 67468416 ~ 67743756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGCGCGCGGGTGAGAGAGAAGAGCATTGACTGAGAAGCATAGATTTTCATCCAACCTATATCATTTTTTTCTAATCATCGACTGCACTGCTTAACGTTGATTGTCTAGCAGGAAAATATTTTTCTACGCAGTTGAGGAACCGTTTCAGTTGACGATTATTGGTCCTCTTTGCTGTATTTAAGTGTTCTTGGAACGAATTTATCATATTTCTATTTATACTTGAACTGCATCAtgaacagtttgtgggcacctcTCGATCTCACACCTTTGGAATGGTGGGGATTACGCAGCCGACAAATGGGGAGCATGTAAACGCAGATGGAGTTTGGGATTTATTGCAAAATAAGGGAAAGATGACTGTCTTCTCTTTGTGTCTCCTCTTGTTCGCGGATCTGCTGGATTTAGCCGTTGGATATCTGACAGTAACCATTGAGCCCCTTCCTCCTGTTGTTGTGGGAGAGACTGTGACCCTGAAGTGCAACTTCAAGACTGATGGAAGACTTCGAGAGATTGTGTGGTACAGGGTCACAGACGGGGGCACCATTAAGCAGAAGATTTTCACCTACGATGCTATGTTTAATACCAATTACTCACATATGGAGGACTATCGCAAACGAGAAGACCTTGTGTACCAATCTACGGTCCGGCTCCCGGAGGTTCGGATCTCGGACAATGGGCCTTATGAGTGCCACGTGGGCATCTACGACCGAGCAACGAGAGAAAAGGTGGTCTTGGCATCGGGAAATGTCTTTCTCACCGTTATGTCTCCTCCAAACAACATCTCAGTTACGGCAGAGAACTGTCCAGCTCCATTCAGCCGGTACCAGGCCCAGAACTTCACTCTACTGTGCACTGCAAAGGGAGGCAAACCTGCCCCTTCGgtgtacTTTAAGCGAGATGGAGAGTTGATAGAGGTGATTTCCTACATCCACCCCTCAGCTGTTGCAGAGGACGGCGGTGGCTCAGCGGGGGTGCGGGGTGCCAGGCCGCTCATCAGCAGGGACCTGGACGACACCAAGCTGCAGAGGTCCCTTTCCTTGTTGGATCCAGAGGGGCGGCCAGGCCGCCTGTTCACCGATAGCCCTGAGCGTGGTCGTAACACGGGCCAGCACACCCagggccagcagcagcagcccagCCCTGCCACCGAGGTCATTCCAGAGACTGTGGTGAGCCGGGAGTTCCCCCGTTGGGTGCAGAGCACTGACCCACTCTACTACTTCAGCCACACCCACATCCCCCAGAGTGATGGCTCTGTGCTGGTGCAGGCCAGACTCACCTGGACCCTTAACCCCCAGCTGGACAATGATGCCATGTTCAGCTGTGAGGTCAAGCACCCAGCACTCTCCATGCCCATGCAGACAGAGGTCACATTGGcggCTCCTAAGGGCCCCAAGCTTTTGATGACCCCCACCAGGGCAAAGGTAGGGGACACAGTGCGCATCACTGTGCAAGGATTCCAGAATGAGGTGTTCCCTGAGCCCCTTTTCACCTGGACCCGGGTCGGGGGCCGTCTGCTGGACGGGAGTGCCGAGTGGGATGGGAAGGAGCTGATTTTGGAGAGAGTGCCAGCCGAACTCAACGGCTCCATGTACCGCTGCACAGCCCAGAATCCCCTGGGCTCCACGGACACGCACACTCGCCTCATCGTCTTTGAAAATCCGGCCATGATGAAAAACACTCAGAATCCTAACAATGGAACCCCTCGCATGGATGTGCTTGGACCTATATGGATGGTGCTGGCCCTGGTCCTCACAGTGACTGTGGAACTGACGTGAAACCTTCCAGCCAACACACtcaatgcacacatacacaacacacacacacgtacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacatatcccaagcccctccaacacacacccacaccacacacacagtcctacaaGCCTTTTCCAGTCATCCAACAGGCCCTCCATACGTCAGTCTTTCAGGAACCAGTGCCACCACCCGATGGCCCTCCACTCTGTTTTTGTAATGAAATAATAACCAAGATtataatataaagaaaacagCATAACGTACTGAACATGAGAATAACCACCTCCAGTATACCCCTTCCCCACACCTTCTTTTTTGTTTATTGTCCCACCTCTGCCTGTTGATCAATAAAAATCAGTTGCtaaaaaagggggaaaaaagcATTTGGGTTTGTTTTGATATGTTCAAACATTGCAGGAGTTGACTGTGTAGAGAGACATGAACCGACCGGTGTTGGCAGGCCCACCACATTGACCCCACCCAATTGTCCCATTCACTGGGCTGTGCTGTACCCAATCTTTAAACTACAGATGAACAACTGGCAACTAAATACTCAATGAGAACATTGTTTTTTATTGCTAAtcggttgttgtttttttcggaTGGCTTGGAATGTGCAATAGGACTAAACGCAAAGAGAAAATGGATAATCTTCTTTTTGAGTGTATTTTGTGTACATCCGCGTAAATATTGAAGATAATCAGAGGTTTTATGGGTTCAGGTTAGGAATGGTTGATGAAGAGTTGTGAGGGTTTGCAGCAGCTCACAGCCTTTGTTTGTATTTTCTCATCCTTTCTTGCTGTTTCAAGAGATAATCCTATAGGCTGTCAGGACAGAATCATCTTTAAATGAGGATAGAAAAACAATGCAAGTACAGTATCTTACATTATGTCCGCCGTTCGGGGTTGTGGTGCATGTGACGTTTGACAATTCTTTCTCCTTTTCGTGTGTTGCAGTGCTCAACATCTCATTGTCACTGGCCTGTAATCCAGTTATTTACTTGTTGCATACTATCTTAAGTGACCTGCGTTGTGTACAATATGTAACTCttccccctgacatctactagtAGGGTCATGTTATCCACCATTCCAGGAAGATGCTCACCCGACGCAGAGTGTAAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAATGGAGAGATTATCAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1690696 lncRNA upstream 45609 67416713 ~ 67422808 (+) True G1478323
TU1690457 lncRNA upstream 219657 67196958 ~ 67248760 (+) True arhgef10la
TU1690447 lncRNA upstream 377899 67089307 ~ 67090518 (+) True G1478094
TU1690448 lncRNA upstream 380945 67087293 ~ 67087472 (+) True G1478095
TU1690433 lncRNA upstream 454464 67012546 ~ 67013953 (+) True G1478081
TU1690936 lncRNA downstream 4704 67748460 ~ 67748694 (+) True klhdc7a
TU1690734 lncRNA downstream 9600 67753356 ~ 67754494 (+) True G1478356
TU1690938 lncRNA downstream 12367 67756123 ~ 67756335 (+) True G1478558
TU1690943 lncRNA downstream 18038 67761794 ~ 67762001 (+) True G1478563
TU1691757 lncRNA downstream 130405 67874161 ~ 67874581 (+) True G1479310
XM_021569476.2 mRNA upstream 268794 67091515 ~ 67199623 (+) False arhgef10la
XM_021569479.2 mRNA downstream 4065 67747821 ~ 67752755 (+) False klhdc7a
XM_021569481.2 mRNA downstream 31618 67775374 ~ 67784857 (+) True dhrs3b
XM_036948354.1 mRNA downstream 346449 68090205 ~ 68094863 (+) True LOC110493241
XM_021570506.2 mRNA downstream 406274 68150030 ~ 68151429 (+) True si:ch211-220m17.5
XM_021569493.2 mRNA downstream 533166 68276922 ~ 68320684 (+) False LOC110494448
TU1690094 other upstream 600537 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 633477 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 687625 66679260 ~ 66780792 (+) True kcnab2a
TU1690012 other upstream 749729 66717373 ~ 66718688 (+) True G1477697
TU1689884 other upstream 910905 66557037 ~ 66557512 (+) True G1477578
TU1692079 other downstream 378782 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 1190570 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 1250876 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2907187 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 3095864 70839620 ~ 70841230 (+) True LOC110494494

Expression Profile