RNA id: XM_021569479.2


Basic Information

Item Value
RNA id XM_021569479.2
length 4935
RNA type mRNA
GC content 0.47
exon number 1
gene id klhdc7a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 67747821 ~ 67752755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacataacaaaatgtggaaaaagggaaggggctgaataatttcagaaggcactgtatgtggatgTTCATTGAAGGCCCATCTATGATAAAAGAGATAGTGGACCAAATAAAAGCACACATCCTGGCTCTATTGTGTTTGTGTCGTGTTCCGGATATTTGTAGGGCATGCATATCTGATGGCCAACAGAGGAAATATATGTAATCATGCTTGTAATGTATGCAATATATCTTTTTCACAAGTACATAACAAAATACACATAAACACATCAATTGCTTTATCTTTTCACACGTCAGTGCTAAACTTGTAATCAGAATGGCCTTACGGTAATTACGCCCTCTGATAGTCATGTATAGCTATCGAGTTCACTTTCCCCTCACCCTACCTTATCTTAATCTATTACACATTCCACCTATCCTCCAAAAAGAACCCTTACGGTTATATGGTTCACCTTAAATAGTTATGGCTGTTTAAACTGTTTACATTTCCCATTTCCTGTCCATATCTTATCACAATATCATTtcacaggaggagaagaggtgaaAGTGTCTCCATACAACACTGCACATGCTGGCAATCATTTTGTTCTGCAGTGCTCCTGAATGGTACACCTGAGATGGCGGAGGCAGTGAGGAGAATGAGCTGCCTTTGTGTGACACCAGTGAATTATTCACGACTAACCACGCCGGCTGAATCCAGATCCCTTTATGGGCATCTGGAGTCTATGCTATCAGATGGCCAAATAGTGTCTATGTCACAGAGGACACCGGCCAAATGGCTCCCTGCAGGACACACCTCCCTGAGATCATCGCATCGCTGCCGGCCCAGCTCTTTGTTATGACCCTGGCCTCGGTCAAGCGTGTCGTTATCGGCAACACAAATTACAATTTGACAGCTTAACTGCGTTGACTGAGTGACAGGACTCAGGCGTGACAGAGATGTATGTATTGTATGTCAACGCAGTCTATAAATATGGATGATATTGTCAGATTCATACAGTCAACATTCCTTTTTGGCATTGAGGCTCTGTCTTACAGTACGTGTTCATAACAGTGTGTGATAGAAATGCACTTACCCAGTCATTGTTTTTAGAAGTCTGTGCTTAAATGTATAGTTCATTTCTATAAGAACATGATCCCTGGCCTCTTTTCCTGTTGTAGCTGAGCCAAAACAAATGTGTTGTATAGTGAAAGATATTTCATCTTTAGTTTTGTCTGTGCAAACAACTGTATCCTGGTCATGATGTCCTTAAATGTGACCAATCAGCCTTTCCCACGCCTTAGTCAAACCACGTCTTCAGCAGACAGCAGACTGTCATGTGTTTGAACTGGATCATTATTTTCTTGTTGACATAGGTCTGAAATAGAGACATATGATCCAGGCCACTCCTACAAATACAGTCATGTAAACGTTAGACTCAACAGCACTATAGTCTGAATCTGTGTTTAACCTTGTGGTGATATAGTTTCCAAATTGTTCAAACACTTAATTAAACCACTCAGTAAACAACATGATAAACTCATCTTGTGATGAGACAACAAATGTAAATATGTACACTGGAACTATCTAAGTATGACTGTTCTCTACGACATAGTGAAGGCCAGAGCAAACATGATCACCTGTTGCAGGTGGATTGTGACCGCTGCCCCGCCCCAGCAGCGAGAGATGCAAATAGTGTTGGTATCAGTTTACAAGTTgtccagagagaagagagagaacagacacagtCATCAGACCTCTACAGCCTGCAGGTTACCAGCTACCATTGGCTAAGATGCACTGAAAAGAAATACCCAGACAAAAAGGTTGTTCACCTTGGCAACTCCTCCGTTTAGTCATGCCCATAGCAGATCTGCTGGGTGTCCAGTTCGACATGCAACTGCTGGGGAAGCTGACGTGTTCCGTGGCCGCTGTTCTGCTCATCTCCTGGGCTTACAGGTTCTACAGCTCGAGGGGTACAGCAGCTAAACCCCAGCTCTATGTGAGGCCTCCTCCAGACAGGCCCACTGAAGCACCCATTGGAACCTGTCTGAACTGCAAGATGGAACTGCGAGCTCCAAGCACAGCCAAACATGACACAAGAAGTGATGGGGACAAACAGCCTGGCCACTCACAGAGTGATGACCTGACACCTGACAAGACCAATACAGGGACAGGGAAAGGAGAAGTGACCCAGATTGAAGAAGCAGGCAAGTTCACAAACACTAAGGAAATGGCTGCATTGCAGGAGGAATCGAATGTAGAGGAGGACAACAGCTTGGAGTTGGAGGAAGATTTCCCCGTGTTTGTTGAGGAGGCTGAGATTAAGACCAATAATTGTATGTTTGGATCCATCTTGAAACTCCCTGATCCTAATGACAGTGGGCTGGCCAGCCCATCAGGCCGTCGATCCCCTTGCTTTCTGCAGAGGCTGGAGGGCAGTGTGGGGCTGGGTGTCGGCAGAGAGCTGCGGCAGGACCTGGGGCTCCAGGGGGCCTACTCCAGCTTTCTCTCCAAGGCAGAGATCACAGTGGAGGATGCCAACCTTGTGATGGAAGGACCTGGGGACCAGAGCATTGTGCGGGGAAAGATCTATGAATACTTTGTGGAATCTTCCTCGCACTCCATCACAGACTCCATATTGGGTCAGTTTGAGGGGAATTCACTGGACTCACAGTCTGTGAAATTTGGAAGCCGTGGCAGCAGCCTCACTGAGCCTCCCTCGTCCCTAAGCCCCATCATCATGCGTGATCTGGTTTTGCCGCAGAGTCCTGATGAGAGGCCGTTCTCACCAGTTAGTCCGGAGCCCACATCTCCCATCAAGCCGGGTCTCATACGCAAGGAGAGCTACCTCACAGCGGCTGAACATTCAGAACTCCTGATCACCTCTCTGATACCCAGAGCCTCGACCCAGCTGAGGCCCCACTCTCAGGCCTATTCATCAGGGGATCCCAGCCCTGTCACTCCCCTCAGTCCCATGACAGACACCAGGGGCCCCAGTGCATGGGAGAAGCCCAGCCTAGAAACCATAGCTGGGGCTAGATTTGTAAATCTGCCTCAAGAAAACATGGGCAGCTCAGAGTTGGAGAGCTTAAAGGCCAAACTTGATTTGGGCAACTGCATGGAGGTGCTGGAGCTGTCTAAGAAGCATGGGCAGGCCCCTCTGCAGCAGGCAGCCCTCAGAGTGATGTCTGACAACTACCTCCAGGTCCTCAGGGACCCAGGTCTGTATGGGATGCTGAGAGCAGGCGAGCGGGATGAGATTCAGAAACAGCGCATGAGAGGAAGGCAGTTCTTAGTGGCAGCCAACATGGTCCCTCAGGACTGGGTGGGGAGTAGTCCTCAAGGGACAAAAACAGAGCAGCGAGCCACCaacaagccatacagtggtcTCTACTGCTATGATGATTATATAGACAGCTGGCACCCATTGTGTCCCATCCCGCAGGAAGTCATCTCCAAAGGCTGTGCCGTGTGCACTATGGACAACTACTTATTTGTAGCAGTGGGGGGCTGCCAGCAGGGcgcagacagagagatgaagcCTTCCAAGAGAGTGTTCTGCTACAACCCTGTAACGTCCATTTGGAAAGAGATCAGTCCTATGAATGAGTCCAGGCCCCACTGCAAACTGGCAGCCCTGCAGGGCTGCATCTATGCCATCGGAGGGGAGTGTCTGTCTACCGTAGAGCGCTATGACCCCCGCTCTGACAGATGGACTTTTGTGGCCCCACTGCCCAATGATACATTTGCTGTGGCCCATCATGTCACGGTGTGCAATGGGGAACTCTTTGTTCTAGGGGGAACACTGAGATACACACTGTTGCGCTACAACCCAAAAACCAATGTGTGGAGGAAAAGCGCAATAACGGGAAGCAAAATGAGGACCACCGAGATAGTGGGAGTAGGAAACTTTCTGTATCGATTTGATGTCAACCCACAGCTAGGCATCAGTGTGTACCGCTACCACACCGTGGCACGACTATGGTATGAATGCTGCACCAAACGCCTCGCCCACTGCCCTGCATTTCAGTGTGTTGTTGTGGACGACACCATCTACTGCATATGCCACCAGTTCACCATGAGGTTCCTGGCTGATGAGATCTCTCCGAGCTTCGTAGCGGATGATTTGAGTGTCCTCACTGCAGCTAAGGGCATCCTTTTCCCCTTTGTACTCTCACTTCCTGATAAGAAAGCTCTCCAGACCAGTGTGTGACCAGGAATGATTCTCCTCAGCACAGACAAGGTCAGAGCAGTGAGGGAGTATCTCGTGTTTTTATGCACCCAGGCCATTTCCATAGCTGAGAGTGTCCTACTGGGAAGCACAGCTGTCTTAATCAGAGGCAATGAAAGTAAAATATTAACGCCATTAATGGTAATTAGACTACTGCTTGTTTAGATTTATTCAGGGTGTACTGCCATAGAAACTCCATGTTTTTGTGAAAGCTGCTTGTTCTTTTCATTTCCCTCCTCCCTTGCACTACCGAGTTACttctaaatcatgcaaatataaaaaaataattaataaaCAAGTCTTAAGTTAATTCACTCAACCATAATGCTTTGGAGTACTGGGTTGATATAATAATAATCCATCACAGTAGGCAGCTGTGTagggtacaaacattactcaCACAGGACTGGACTCAATACAATTATCCACAGTTGGTCTGTAAATATGACATGATGTAGAAGGTTGTGACAGGgcataatgtactgtatgtgagctTCAATAAACAAAAGTCCATGCTACTTTTGAATCTCTTCTAAGGTTGGAGTATAGTATTCGCCTGTTTTCTTCTGCTGTTGTTTTCAACATTGTTGATATTAGAAGTTATTCATGCACCAACATAACGAATGACTCTTGATTTTATAAACACATATTTATCGTTACATTTGTACAATATTAATCAGCAGAAGAAAGAAATAtgcaaaaaaattataaaaaactgAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1690783 lncRNA upstream 213424 67534119 ~ 67534397 (+) True G1478405
TU1690696 lncRNA upstream 325013 67416713 ~ 67422808 (+) True G1478323
TU1690457 lncRNA upstream 499061 67196958 ~ 67248760 (+) True arhgef10la
TU1690447 lncRNA upstream 657303 67089307 ~ 67090518 (+) True G1478094
TU1690448 lncRNA upstream 660349 67087293 ~ 67087472 (+) True G1478095
TU1690734 lncRNA downstream 601 67753356 ~ 67754494 (+) True G1478356
TU1690938 lncRNA downstream 3368 67756123 ~ 67756335 (+) True G1478558
TU1690943 lncRNA downstream 9039 67761794 ~ 67762001 (+) True G1478563
TU1691757 lncRNA downstream 121406 67874161 ~ 67874581 (+) True G1479310
TU1691758 lncRNA downstream 122243 67874998 ~ 67875217 (+) True G1479311
XM_036950494.1 mRNA upstream 4065 67468416 ~ 67743756 (+) False LOC110494440
XM_036950495.1 mRNA upstream 4065 67468417 ~ 67743756 (+) True LOC110494440
XR_005037054.1 mRNA upstream 48950 67697840 ~ 67698871 (+) True LOC118940488
XM_021569476.2 mRNA upstream 548198 67091515 ~ 67199623 (+) False arhgef10la
XM_021569481.2 mRNA downstream 22619 67775374 ~ 67784857 (+) True dhrs3b
XM_036948354.1 mRNA downstream 337450 68090205 ~ 68094863 (+) True LOC110493241
XM_021570506.2 mRNA downstream 397275 68150030 ~ 68151429 (+) True si:ch211-220m17.5
XM_021569493.2 mRNA downstream 524167 68276922 ~ 68320684 (+) False LOC110494448
XM_021569495.2 mRNA downstream 524168 68276923 ~ 68320684 (+) False LOC110494448
TU1690884 other upstream 84172 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 879941 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 912881 66833572 ~ 66834940 (+) False iffo2b
TU1689890 other upstream 967029 66679260 ~ 66780792 (+) True kcnab2a
TU1692079 other downstream 369783 68122538 ~ 68125780 (+) True G1479621
TU1692851 other downstream 1181571 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 1241877 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2898188 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 3086865 70839620 ~ 70841230 (+) True LOC110494494

Expression Profile