RNA id: TCONS_00046400


Basic Information

Item Value
RNA id TCONS_00046400
length 501
RNA type processed_transcript
GC content 0.41
exon number 4
gene id XLOC_023458
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 23971056 ~ 23977285 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTACAGGACACAGTAAAACAGCACAACAACTTCAGAATTCCCCAGAGACATTGTTGGATTCATTTGAAACTTCCGACTTTGAGCAGGAAGTGGATGAGCTGCTAGCGTGGACCAGAGCTCTTGATTTTGATGACTATATCAATGAATGGAGGAATTTGGGCACCAGCAGATGTTACATAGTTGACAAAGGAAGACCCTGCCCTTACCAGGTGGCTGCATGCACGTAATATCGTGTACCCGCATTTCAGACCATCTACTAAATCATCACTGATTGGCGTGGCTTTTGGAGCTTTACCTCTGGTGCTCTTGTACTTTGTGTTGAAGACAGACAGGgACAAAAGGGATTCCAAAATAGATGCCGGGACTTATAAACGCCCCTTTAAACTGTCATCCTAAAATTCTCAGTTCGCTGTTTCTTGCAACAAACAGTACTTGTAATTATATATTAAACACCTTATTGTTGAAAcgtcattactattattaaagaAAAAGGAAAAGCA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-040426-1973 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adaxial cell; digestive system; lens; musculature system; and solid lens vesicle. Orthologous to human NDUFB4 (NADH:ubiquinone oxidoreductase subunit B4).

Ensembl:

ensembl_id ENSDART00000146514

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046860 lncRNA downstream 213759 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 218481 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046389 lncRNA downstream 328151 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047189 lncRNA downstream 328430 23466434 ~ 23642626 (-) False XLOC_023451
TCONS_00047190 lncRNA downstream 328430 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047192 lncRNA upstream 118031 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00047193 lncRNA upstream 118031 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00046410 lncRNA upstream 133937 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046418 lncRNA upstream 189685 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 439039 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00046398 mRNA downstream 28334 23936829 ~ 23942722 (-) True XLOC_023457
TCONS_00046397 mRNA downstream 131409 23837519 ~ 23839647 (-) True XLOC_023456
TCONS_00046396 mRNA downstream 186355 23758510 ~ 23784701 (-) True XLOC_023455
TCONS_00046395 mRNA downstream 213053 23729908 ~ 23758003 (-) False XLOC_023454
TCONS_00046394 mRNA downstream 254959 23687410 ~ 23716097 (-) False XLOC_023453
TCONS_00046402 mRNA upstream 11685 23988970 ~ 23998897 (-) True XLOC_023459
TCONS_00046403 mRNA upstream 58578 24035863 ~ 24038800 (-) False XLOC_023460
TCONS_00046404 mRNA upstream 58910 24036195 ~ 24060632 (-) False XLOC_023460
TCONS_00046405 mRNA upstream 75460 24052745 ~ 24060460 (-) True XLOC_023460
TCONS_00046406 mRNA upstream 124526 24101811 ~ 24111674 (-) False XLOC_023462
TCONS_00046386 other downstream 697697 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1598956 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1661998 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1873293 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 2002940 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046409 other upstream 125436 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 158617 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 158643 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 1031032 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2381954 26359239 ~ 26362471 (-) False XLOC_023496

Expression Profile

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