RNA id: XR_005037056.1


Basic Information

Item Value
RNA id XR_005037056.1
length 2533
RNA type mRNA
GC content 0.50
exon number 17
gene id LOC110494448
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68276922 ~ 68320684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAACCACTCTGTGGAATGcacacactccctctcacacaccctcactcTCAGTCACATAAGTCGATTAAGTGAATGCTCCTTCCTGTTTTTCGCGAGTTCCCTCTCTGTTTTGTTTCTTGTTTGACGAGGTTGGGCTAAGTTGGAGCTCCAGGAGAGCATGTACTGAAGGAGGGCTGAGCAGAACAACATAGTTGCTAGAGAGGAAGGGCTGTTTCTTTGAAAACCTTTACAGGACTTTTTAAGTGGAGAGTCTTGACGGCGCCCACGAGATTAGACCCCAGGAGTAGCCGAATGACGCAATGGGGGGTTGTTGAGTagggggttagggggtagggaggtggtgagaagAGGGTAGGAAATACTGGGGCGCTGAATTTAATATTCCTTCCCCTGATCTACATCACACACATCCtgtaggaaaggaaaggaaaggagagggccTTAAGGAGCATGGATGCACTGAGGGAGTCTTTTCTGCATTTGACCTTTCAGATGTCCACGTACAAGAGGGCCACTCTGAACGAAGATGACCTGGTAGATTCCAACGGGGATGAGTTCTACCCCCCTGCCATGCAGgtgacACTGCGACATGGTCCTGGTCCCAGGTGTTGGGCTGAGAAGACATACACTGAACGGAGGCTGTTGGTCCTAGTGTGTGCATTGTCTGTTGCCTTGTTCTTCTCTCTCATCACTGTTGGGATCTTCTACAAAGAGACTCACCCAGGTGTGTGTCGGACAGAACCATGCATTATTGTGGCTAGTGCTGTGATTGGAGCCCTGGACCGTTCTGTGGACCCCTGCCACGACTTCTACAGCTTTGCCTGTGGGGGATGGGTACGGAACAACCCCCTCCCTGAGGGAAAGTCCCGATGGGGTCCCTTCAGCAACCTATGGGAGCGCAACATGGCCATCATGAAGCACCTGCTAGAGAACACCACCATGAAGGGGCTGAGCAAGGCTGAGGAGAATGCCCAGATGTATTACAAGGCATGTATGAATGAGACTAAGATCGAGGAGTTAGGAGCTCAGCCTCTACAGGAGCTTATCAATCAGGAgatcatacattttattttacagaCAGGAGGATGGGCCCTAACTGGCTCCTGGGACAAGAACAATTTCCAGGAGGTTCTACGCACAGTGTCAGCCAACTACCATTGCTCCCCTTTCTTCACTGTGTTTGTCAGTACAGACTCCAAGTGCTCCAACCACAATATTATTCAGGTGGATCAATCTGGGCTGGGGCTCCCCTCTCGGGATTATTACCTCAACAAAACTGCCAATGCAAAGTATCTGAATGCATACCTAGACTTCCTGGTGGAGTTAGGGGTCCTGTTGGGGGGCTCACAGGAGACATCCAGATCGCTGATGCAGGAAATTGTGGACTTTGAGACCACCCTGGCCAACATCACCGTAccccaggaggagaggagggacgagGAGCTAATTTACCATAAGATCCAGGCAAAGGATCTGGCGACATTGGCTCCTGCGGTGGACTGGATGCCTTACCTCACAGACGTGTTTGCTCCTGTTCTTCTAAATGACTCAGAGCCTGTGGTGGTGTACGCCAAGGACTACCTCCAGAAGGTCTCTGACCTCATTGCAAGCACTAACAAGAGTGTCCTGAACAACTACATGATCATGAAGGTGGTGAGGAAGATGGTGTCCATCCTGGACAAGAAGTTCCAGGATGCTGAGCAGCGCTTCTTTGAAGTCATGTATGGAAccaagaagAGCTGCACCCCACGCTGGAAGCTGTGCGTCAGTGACACAGACAGTGCCCTCGGCTTTGCTCTCGGGGCCCTCTTTGTCAAAGCCACTTTTGCTGAGGACAGCAAGGCCATTGCAGAAGATATGGTCTCTGAGATCAAATGGGCATTTGAGGACAGCCTGAAGTATGTGGACTGGATGGATCAGGGGACCAAAAAGGCAGccagagagaagGCTGAAGCCATTTACAACATGGTTGGATATCCAAAATTCATAATGGACCCCAAGGAGCTTGACAAAGTGTTCAATGATtttgaggtggtgtctgacctgtatTTTCAAAATGTCATGCAGTACTACAACTTCTCTGCCAGAGTGACTGCGGACCAGTTAAGGAAAACCCCCAACAGAGATCAGTGGAGCATGACCCCTCCTACAGTGAATGCATACTATAATCCTACCAAGAATGAGATGGTGCTCCCTGCGGGAATCCTTCAAGCTCCTTTTTATAGCCGCTCATGGCCAAAGGCCCTGAACTTTGGGGGGATTGGTGTAGTTATGGGACATGAGTTGACACATGCTTTTGATGACCAAGAAATATAGCTAGGCTGTACACTTACAGTACCTGGCAGGGGAGACACCTTGATCACGAAGGAGGTTCACACCCAGGGCGAGGGAGGGAGTACGACAAGGATGGGAACCTCCGCTCCTGGTGGAAGAACTCATCTGTGGAGGCCTTTAAGAAGCAGACCCAGTGTATGGTGGAGCAGTACAGTAACTACAGCATCAACAAGGAAGCCCTTAATGGAAAACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692150 lncRNA upstream 29665 68263965 ~ 68265378 (+) False G1479684
TU1692151 lncRNA upstream 29665 68264575 ~ 68265378 (+) True G1479684
TU1692143 lncRNA upstream 35056 68258926 ~ 68259987 (+) True G1479679
TU1692138 lncRNA upstream 48896 68245923 ~ 68246147 (+) True G1479675
TU1692133 lncRNA upstream 69527 68224014 ~ 68225516 (+) True G1479670
TU1692263 lncRNA downstream 89250 68408286 ~ 68408545 (+) True G1479722
TU1692268 lncRNA downstream 106447 68425483 ~ 68425951 (+) True G1479725
TU1692305 lncRNA downstream 150754 68469790 ~ 68470847 (+) True G1479757
TU1692317 lncRNA downstream 160575 68479611 ~ 68479914 (+) True G1479766
TU1692329 lncRNA downstream 176796 68495832 ~ 68496046 (+) True G1479778
XM_021570506.2 mRNA upstream 143614 68150030 ~ 68151429 (+) True si:ch211-220m17.5
XM_036948354.1 mRNA upstream 200180 68090205 ~ 68094863 (+) True LOC110493241
XM_021569481.2 mRNA upstream 510186 67775374 ~ 67784857 (+) True dhrs3b
XM_021569479.2 mRNA upstream 542288 67747821 ~ 67752755 (+) False klhdc7a
XR_005037054.1 mRNA upstream 596172 67697840 ~ 67698871 (+) True LOC118940488
XM_021569507.2 mRNA downstream 3151 68322187 ~ 68395828 (+) False LOC110494450
XM_036950503.1 mRNA downstream 3151 68322187 ~ 68395828 (+) False LOC110494450
XM_036950504.1 mRNA downstream 3151 68322187 ~ 68395828 (+) False LOC110494450
XM_036950505.1 mRNA downstream 3151 68322187 ~ 68395828 (+) False LOC110494450
XM_036950506.1 mRNA downstream 3151 68322187 ~ 68395828 (+) False LOC110494450
TU1692079 other upstream 169263 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 631394 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1427163 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1460103 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1576355 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 615290 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 675596 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2331907 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2520584 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2859477 71178513 ~ 71180429 (+) True G1483346

Expression Profile