RNA id: XM_036950511.1


Basic Information

Item Value
RNA id XM_036950511.1
length 6653
RNA type mRNA
GC content 0.54
exon number 35
gene id LOC110494450
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68322187 ~ 68395828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATACCCGTAATTGGACGAGAATAGCCGAATCATCTGTCCTACCGGACTGGAAGCGGCCGGAACGCCATGTTGACGAAGTCTCCCATCTCCGTGGAAAAAATGATTATAGAAAAATCAGTCGTTGAAAACAAATGTTAAATTATCGAAGGAGAAAAGACGCCGGTGATAGTGTTCGGAAGAACTGAAACGGATCTGCAGAGGTCCCGGGCGGGCAAGGGAGGCAAACCTCCCACCGTCCCCATGAATAGCACCACAGACCCGAACAGCGACTTTCCATGAAAAAAAGCTATTCTGAGTTGCTATAATAGCTAGCTAGCCCTAGTGTCGGCTAAAGGATTTGCGGCCTGTTTCAATCATATTCAACGCTTGCTATATTTATGAAAGCTAGATATATTTTGTATCAGTATTTATTAGTGTATTGTTTTCCTTGGTTTGTTTTTTTGCAATGAGTTTGCCGGCGAAAATAGTCCCAAAACCTGCCACTGTCGCAGTAAGTGGACCTGGAACTGGCCCGTCTCCGTCGAGCCAACTGCGGGCTACCCTGACCTCGGTGTCTTTACCGTCGGGAGCCCCAGGCGCTCCTCAACTGAACACCTTGCCGCCTCCTCAAATTTTCCTTAATATGACGCGTCCCAGGTTCTCTCGGGTTCAGCCATCCCTGGATGACCGCATCTTCCCCACACAGCCCGGTGTCGCTGCCGTCTACAGCGTACCGAGGCACCCTGGTCCTCCCTACACAGCTCACGACTACACAAAGGGACACCCTAACTTGGCGGGCACGCCGCCAGGACATGCCCACTCGCAGGCGCTCTCTCAGGTATCATTACCCACAGCTTCCCCATATCGCTACCCTAAGGGCTGGGAGGCAGGTGGAGTGTCTCCATACACCACTGGACAGAATTCTGGCTCAGCACCTCTAGTGTACTCTCCTCAGACGCAGCAAATGAACACGCAACCGCAGAGTCGCCCGTTCGCGACGGGCCCTCGACCAACCCACCATCAGGGAGGATTCAGGCCCATCCAGTTTTTCCAGAGGGCTCAGATGCAGACAGCGCGGCCAACCATCCCCACCAACGCTCCCTCTATGCGGCCCTGCTCTCAGAACCCCACATCGGCGGTGTACCCCCCCAACCAGCCCACCATGATGATGATGGCCCCCATGCCTTTCCCCTCCCCACAGGCTGCCCAGTACTACATCCCACAGTATCGCCACAGTACGCCCTATGTGGGGCCGCCCCAGCAGTTTTCAGTGCAGCCGCCGGGGTCTGGCACCTTCTATCCTGGCCCTAGCCCAGGGGAGTACCCTGCTCAGTACGCTCCTGGACCTCAATACTACCCAGGACAGCAGGTGtacccctcctcaccctccatcATAGTGCCTACACCGCAGCAACCTCCACCAGCCAAGCGTGAGAAGAAACCATCCTCCCAGATCCGTATCCGGGACCCCAACCAGGGCGGCAGGGACATCACAGAGGAGATCATGGCAGGGGGCACAGGGAGCCGAAATCCAACCCCCCCTGTCGGACGgccctcctccacccccacccctccgCAACAGCAGCCGGGCGGTAGCCAGACTCCGGAGCAAAGCCAGGGCCAGGCCAACTCAGCCTACAGCCTGGAGCTCCCCCAGCAGCCACAGCAGCAGCTCACGCCTGGGGCTGCAGCCAGCAAGCCAGGGCCAGTAGATGATAAGCCAAAATTGGAGCTGCTTGTCCAGAAGTCTTCCTCTCCCGGGCTTGGTCAATCAGAACCTTCATTGGAAAGGCGAGAGGCCAGTGCATCTGTAACTGCTCCCTCTCCCCACTTGGATCCAGAGCTTCCCTCCCCAGCCCCAGTGTTGGTTTCCCCCATCCTGGCCCCTCTTCCTGTTGCCGGCCCTATTGAGCAGCCCTCTGCCGTGGAGCCCactgctccccctccctcttctgcAGCGGACGCCAAGCACCTGCCACTCACGACTCAGTCCCAGACCTCAAACACAGAGGAACTTCTTCCAGAAGCCCCACGCACCCTTGCTGCTTCCCCAGCCCTAACCCCTAAGGCTTTGAATGGCCATGCTGACACTGGGGCTGAGATGGACACCCAGTCTCAGGAGCACTACCCCCTTGCTCCCTCCCTATCCCCAACCCAGCCCCAGGCTTCAGCCCCGGCTCCTAGAGAAGACTGCAGTGAGGCTGTGCCCAGTGTGGTGAGGGCAGAGATGCCCCCTGCTGTCATGGACCCTATCGCACCAATCACTGTGATGCCAGTCACTCTGACCTCCAGCCCTGCGCCTGCTGTTCCAGCGCCTCCCCCTGGCCTTCCGCCGCTAGTGCAGGCCACAGCAGAGACCAGCAAGCTCTCAGACACTAAAGACATCCCTctcaaagcagggacagagagactcaTCACACCAAACAGCAAGCTTGAACCACAAGCCCTTTTCAGAAAGAGTCCCACTACAGTATGTCAGACTGTTCCTGCTACACCAAAAACCTGGAAGAAACCAAATGAAGGGAGTCCTGTTGGAGATGCATCACAGAGGGAGACTGAGGATGAGCTCAAGCCTGTGGAGGAGGCTGCTGGAGACCAGGCCCTGCAGCCCGCCAGGCCCCATAGTAGCAGCAGCCCGCCCCCACCCTCAGCAGCGCCTCCAGCCATGGAGGCAGAGGAGAAGCCCCCTGCCCCAGAGGAAAATGGGGAGGCTGAGCTGGAGCCCATGAGGAACGGGGCTGGGCACACCTcggagacagagagcagtgacAGTGGGGCCACCCCTGGGGACAAGGAGGGCTCTACAGGAGCACCCCCAGACCTCTTCCAGGAAGATCTGCTGGAGACCAACGGGAAGCGCCAGTACAACCGGGACTTCCTGCTGGGCTTCCAGTTCATGGCTGCCTGTACACAGAAGCCAGACGGGCTACCTCAGATCAGTGACGTAGTTCtggacaagATAAACCAAAACAAGCTGCCAACCCGGGCGGTGGAATCCAGGGTGATCTCTCGTGGCCCTGACTTCACACCTGCCTTCGCTGACTTTGGCAGGCAGATGAGTGGAGGACGCGGCGCTGCAGTGAGTCACGCACACGCTCACcaGATGATGAACATGGGAGGGGGTGCCCGGCGGCCCCCGCCCAGGAAGATTATCCTGAACGTGTCAGCGAACGACGAGGTGCAGCTGAAAAAGGCCGAGAACGCCTGGAAACCTGGCATGAAGAGGGCGGGGCCATCAGACGACCCTGAGGTCATTACAACACAGGAGCTCTTCCGGAAGGTGCGCAGCATCCTCAACAAACTGACGCCTCAGATGTTCAACCAGCTGATGAAGCAGGTGACGGACCTTACCATCGACACAGAGGAGCGCCTCAAGGGCGTCATCGACCTGGTCTTTGAGAAGGCCATCGACGAGCCCGGTTTCTCTGTGGCCTACGGGAACATGTGCCGCTGCCTCACCACGCTCAAAGTGCCCATGACAGACAAACCCAACACCACAGTGAACTTCCGTAAGCTTCTGCTCAACCGCTGTCAGAAGGAGTTTGAGCGGGACAAGGTGGACGACGTGGTGTTTGAGAGGAAACAGAAGGAGCTCGACTCTGCACAGTCCAGTGATCAAGAGAGACTACGGTTGGAGCTGGAGGAGGCCAAGGACAAGGCCCGCCGGCGCTCCATAGGAAATATCAGATTCATCGGGGAGCTGTTCAAACTCAAGATGCTGACAGAGGCCATCATGCACGACTGTGTGGTCAAGCTGCTGAAGAACCATGACGAGGAATCGCTGGAGTGCCTGTGCAGGCTGCTCACCACCATTGGCAAAGACCTGGACTTTGAGAAGGCCAAGCCTCGCATGGATCAGTATTTCAATCAGATGGAGAAAATTGTCAAGGAGCGGAAGACATCGTCTCGGATACGGTTTATGCTGCAAGACGTGATAGATCTCCGATTGCACAACTGGGTGTCCAGGAGAGCCGACCAGGGACCCAAGACCATCGAGCAGATCCACAAAGAGGCCAAGATCGAAGAGCAGGAGGAGCAGAGGAAGGTGCACCAGCAGCTGCTCTCCAAGGACACCAAGAGAAGGCCAGagcagcagcagagagagcagcagagagaacagcagagggagcagcgtgtgcagcagagagaggagacctGGAACACTGTGCCCATGACCAAGAACAGCAGGACCATTGACCCGACCAAGATCCCCAAGATCTCCAAGCCTCAGATGGATGAGAAGATCCAACTGGGACCACGGGCCTCACTCAACTGGATGAAGGGCAGTAGTGGAGGGGCCAAAGCCAGTGACTCTGAATTATCCCGGTCTGGTGGTGGTGGCGCCAGTTTAAACCGGTATTCTGCACTCCAGTCCACCCCATCTCAACCCACCACCCCACCTGCACAAAACCCAGAGTATGACACTAGAAGAACCTTGGGCAGTCGAAGCAGTGCAGGGAAAGAGCGAAGCGAGAAGCCCTTGAGCTCAGCCCTGCCGCGGCCTGGTTCCTTCGTTCGAGGCGTCAGTGCCAAAGAGCTGCTGGCGAGCCCGTCCCTGAGTCCCGAGGAGCCCCGCAGAGAGCTGGAGAGCATCAGGAGGCTCAGCGTCAGCGAGGACAAGACTGAGCCAGAGTGCAGCAGAGCCAGGGAGCCTGTGAAAGCAGAGCCTGTGGTTTCCCAGTCTCCAGACAGACCTGCCCTCtctgaggaggagatggagaggaagtcCAAAGCTATCATTGACGAGTTCTTGCACATCAACGACTATAAGGAGGCTGTGCAGTGTGTGAACGAGCTGGACCTGTCCTCTCAGCTCCACGTGTTTGTTCGTGTGGGGGTGGAGTCCACCCTGGAGCGCAGTCAGATCACACGGGACCATATGGGCCAGCTCCTCTTCCAGTTAGTGCAGCAGGGCACCCTGCCCAAGCCCCAGTTCTTCAAAGGGTTTGCTGACACCCTTGAACTGGCGGACGACATGGCCATTGACATTCCCCATATCTGGCTGTATCTGGCTGAGCTGCTCAGCCCTGTGCTGAGAGACGGGGGCTTCTCTATGAGAGAGCTCTTTAGTGAATTAAGCAAACCTTTACTTCCTGTTGGAAGAGCTGGGGTCTTATTTTCTGAAATACTGCACATACTATGCAAACAAATGAGCCATAGGAAAGTAGGCACCTTGTGGAGAAAGGCGGGGCTCAGCTGGAGTGACTTCCTGCCAGAGGAAGAGGACATCCAGGATTTCATCTCGCAGCAGAAGCTCCAGTTCACTGTGGTGGACTGCTCTAGCCCTGAGGCAGCCCTCTCTGCGACAGAATTGTCCCCCGAGGTGCTCAACCGGCAGCTGGAGAGACTCCTGCTGGAGGACATGGCCAGTGATGAGCAGATCTTTGACTGGGTAGAGGCAAATCTAGATGAATCTCAGATGAGCTCGTCTCCGTTCCTGAGAGCTCTGATGACTGCTGTGTGTAAGGCAGCGGTGAAAGATGAAAGCACTTCCTGCCGAGTGGACGTAGCCATCATACAGAGGAGATTGCCCGTATTACTCAAGTACCTTAACTCAGACACTGAGCGACAGCTTCAAGCACTTTATGCACTTCAGGCGCTGATAGTCACACTGGATCAGCCTCCTAacctgCTCCGGATGTTCTTTGACTGTCTGTATGACGAGGACGTCATCTCGGAGGATGCTTTTTACAAGTGGGAGACCAGCAAGGACCCCGCGGAGCAGCTGGGCAAAGGTGTGGCTCTCAAGTCTGTAACCGCTTTCTTCACCTGGCTGAGGGAGGCCGAGGAAGAGTCGGAGGATAATTGACAAGGGAGCAGGTGACCGCTGCAAGCCTCCAGGACAAGAGGCCAGCTGTTGCTACATAGAATAACTGCATCCTCGTAGCAGAACAAACGGACAAACCTACAAAATGTGTGCGGGCAGAATGACATGTATATGGCTGGAATTTTTTCTGCGGAATGGTTCTGAGACATGCCGCCATTTTGAGTTTGAATTCTAATGGCGGAAGCACTAAATACCTGTATTATACATagaaaatatttttgttttaaatttTAACTTACTTTTCTTTTGTTACTTTTTAAGAAGAGACTTAAAGATACATAGGTTCCGGACTCtttaatttattatttttttaaggaCTGCAAATATGGACGTTTATTTAACATTTGCAGATGCTCACAATGAGAACATTGATGATGAATAGAAATAACAATATtaattataataacaataataattgtGAAATAAATAGCCTCCCTGGATTCCATGTTGTTTGGTTGAAAACAGGGTAAAAAGTTATTTTGGAATGTAGGGGAAGGCAGAGAGTGAATGCACAGAGACAACTGACGTCAATGGTTATCAGTGATTAATCACAGGAAGTGTTTCCTCTGATTTGGCTTGCTCTCTATGTGATATGTACGTAAACTTCCCAAGAGGCAGCGGTATGCATTCAAGATGCAATGCAAATCAGTCCACAAAAGAACATCACATGAACATAAATAAACAACGATGAACAATAGATGCATTCAAATGAAATAAGCAAAATGCAAGTTTAAAAAGCAAATGCCAGGGTTGCTGAACATGAAGCGCTTGTAATACTTCAGACCTACAGAGCAAATTAAAAGCTTGTAAATACATTAAAGACAAAAAAGGTATTTAAAAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692150 lncRNA upstream 56809 68263965 ~ 68265378 (+) False G1479684
TU1692151 lncRNA upstream 56809 68264575 ~ 68265378 (+) True G1479684
TU1692143 lncRNA upstream 62200 68258926 ~ 68259987 (+) True G1479679
TU1692138 lncRNA upstream 76040 68245923 ~ 68246147 (+) True G1479675
TU1692133 lncRNA upstream 96671 68224014 ~ 68225516 (+) True G1479670
TU1692263 lncRNA downstream 12458 68408286 ~ 68408545 (+) True G1479722
TU1692268 lncRNA downstream 29655 68425483 ~ 68425951 (+) True G1479725
TU1692305 lncRNA downstream 73962 68469790 ~ 68470847 (+) True G1479757
TU1692317 lncRNA downstream 83783 68479611 ~ 68479914 (+) True G1479766
TU1692329 lncRNA downstream 100004 68495832 ~ 68496046 (+) True G1479778
XM_021569490.2 mRNA upstream 1503 68295047 ~ 68320684 (+) False LOC110494448
XM_021569492.2 mRNA upstream 1503 68295047 ~ 68320684 (+) False LOC110494448
XM_021569494.2 mRNA upstream 1503 68295047 ~ 68320684 (+) False LOC110494448
XM_036950501.1 mRNA upstream 1503 68295048 ~ 68320684 (+) True LOC110494448
XR_005037056.1 mRNA upstream 3151 68295043 ~ 68319036 (+) False LOC110494448
XM_021569516.2 mRNA downstream 5911 68401739 ~ 68408133 (+) False LOC110494452
XM_036950516.1 mRNA downstream 5958 68401786 ~ 68408133 (+) True LOC110494452
XM_021569518.2 mRNA downstream 13109 68408937 ~ 68414206 (+) False LOC110494453
XM_021569519.2 mRNA downstream 13109 68408937 ~ 68414206 (+) False LOC110494453
XM_021569520.2 mRNA downstream 13109 68408937 ~ 68414206 (+) False LOC110494453
TU1692079 other upstream 196407 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 658538 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1454307 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1487247 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1603499 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 538498 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 598804 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2255115 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2443792 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2782685 71178513 ~ 71180429 (+) True G1483346

Expression Profile