RNA id: XM_036950516.1


Basic Information

Item Value
RNA id XM_036950516.1
length 2696
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110494452
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68401739 ~ 68408133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACGTTCAAGGGGGAGGGGCACTTTGGAGTCATGCCTATACGTCGTGCAGCTGGGACTCCACCCCAGGAGACACCCCCCTTGGCTGCACCAGATGGAGAGCCTGATGCCAGCTCTGAGGAATCTGCCTCtgttgaggaggagcaggaggtagCACCCGCAGCCCCAGTAGCCAAGAAGGGGGAGGGTCAAGGAGAATGTGAGGGCACAGGTGAAGGAGACCCAAAAGAGAATGGTGAGAAACCTGATGAATCGACTGGAAAGAAGACTGAGGAGAAGAAGGCTGAGGGGGAGGAGGCTGAGAAGGAagagaaagatggagtgaAAGAGAAAGTCAAGAAGCCCATTAAAAGGACCATTCCTGCCTGGGCCACCATGTCTGCCAGCAAACGTGCAACGCTCACTAATAAGAGCACCTCCACCATGCAGCCGCCTAGGATGGACGACATCCTCATTGAGGCTATTGAGTCCTGCAAGGAGAAGACTGGGGCCTCAGCCCATTCTGTCATGAAGTACATTGTGAAAAAATACCCTAACCTGGAGTTGGACAAGAGGAAATTCCTTCTCAAGAAGGCTCTCAAGAGGCAGCTGGAGAAGGGCACCATCAAACAGCTGAAGGGTAAAGGCCTTTCTGGAAGCTTTACCATTGGGAAGCAGCCCCCTAATAAATCCACTGCTAAAGGGAAGCCGATGGCAGTAGCTCCTGGGTTGAAGGCAGAGACCCTTGGGGATGCTCTGCCCCTGATCATCACACGGCTATGTGAGCCCAAAGAGGCGTCTTACATTCTGATCAAGAAATATGTGGAGCAGCACTTCCCTCAACTCAACGTGGAGCATCGGCCGGATATCCTAAAGAGTGGCCTGGTGAGAGCTGTGGACAAGGGTCAACTGGAGCAGATCACTGGAAAAGGTGCCTCTGGAACATTCCAGCTGAAGCGGGAAGGGGGCAAGTTCCTGCTTAAAGGTGGGCCCCTGGAGGACGCTATCATGACAGCCATCGTGGCCATGAACGAACCCAAGACTTGCAGTACCACCACACTCCGCAAATTCCTGTTGGAGACAAACAAGGACAGCATGGAGTACCGTGTGGTGAACAGCCTAAAGAGGACACTGCAGAAGTGTAAAATGATGGGCTGGATGGAGCAGATCACTGGGAATGGGCTAAATGGGACCTACCAGCTCTGCTACCCTTACCACCCCAGCCCAGCCATTCTGTTCCCAGAAAAACAGAAAGTGAAAGAGCAGAAAATGGCAGAGAAGGCTAAACGCAGAAAGATGGTTGACTCGTCTGATGAGGACtctgatgaggaggaagaggagtcgtctgaggaggatgaggagtCAGATGATGAACCCCCTCCTAAGAGGAAAGCTGTGAAGCGGCCACCACCTAAAGCACGTCGCCCTCCCCCCAGCAAGAAGTCACAGCCGGCAAGTCAGTCAAGGGCTAAGGGCAAGAAAAGAGCTGCCCCTGCTAAGAGATCTGCACCCCCAGTCAAGAAACCAGCACCCCAAGCTAAGAAAGCAGCACCCCCAGCCAAGAAGCCTGCTCCCCCAGCGAGGAAACCAGTGCCACCAACAAACAAACCAGTGCCCCCGGTTAAGAAACCTGCAGCTGCCAGTAAAGCTGTAGCCTCAAAGAAGACGCCCCCACCAGCTAAGGCGGCACCCACACCAGTCAAGAAAGCTGCTCCAGCGAGCAAGCCCAAAACGCCCATTGTCAAAAAGCTGACAAGCAGGGCATCAAAGCGCCCAGTGCCCAAAAAGTCACCACCTGCGAAGAAGGAAGCAGCCAAATCTGCAGTGAAGGCCAAGCCAGCAGCCCGCAAGTCCCTGAGGGAGAGGAAGTGAGCTCACTATTGACCAGCAGTGGAAGTTTAACTGTAGCTCTGAAGACTGCAGTGCTCTGCCTCTAGCCATGCTCTCTTTCGCATCATTGTTTTCTCCCTGTTTGGGGCTCTAGAATTCTTCTCTGTAGGATAGGGATGTGACAGTTATCAGTTCATGTCAATTTACTGTACTTTGAACTGTTACATTTCTGTGAACCCAACCTCTGAACACCTTATGTAGAAAGTCCTCTTCAAAAACTGTAAAATTGCCTAGGTATTGAATTGTGAAATGTCACAATTTCCCTCACACGCTTGTGTATATGCAGAGATCTAACATAAAATCAAAGTGACTTGTCTTTTAATTTTAACATTTAATCCCAATCCACTTTCCCATGTTTTAGCTTGACACATTCCTTGTATAAAAATATAGAATTCTCTACATTTAATCTAGAGTAAATTTTCAAATCTTAAAGAATATTGAGATTTATGTAAGTGAATTTGAGAGCATGAGAGCCAACTTTTCATGTAATGAATTGTGTTATTTAAATTACATTTCCTTGGTCAGTTGCAGGGCCCATGGTTAAAATACTTAATTTGATTGGAGACTGACATAAGGAAGCAATTTGTCATATTCAGTACTACTGCATAGTATTAGgggaatatttttttaatgtgcGTAACTAATGAAAGTTAATTTTATCATATAaagctataaaaaaaaatatacaaaatcgTCTACATTCTGTGTAATAGTACAAGATTTGAAGAAACTTCATTTTGAAGGTGTGCCTCATGCATACCTTGCATGCATGTATTCTTTATGTTATGCTTTTTTCCAAGTCGTTATTAAAATGGCTATTTGTACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692150 lncRNA upstream 136408 68263965 ~ 68265378 (+) False G1479684
TU1692151 lncRNA upstream 136408 68264575 ~ 68265378 (+) True G1479684
TU1692143 lncRNA upstream 141799 68258926 ~ 68259987 (+) True G1479679
TU1692138 lncRNA upstream 155639 68245923 ~ 68246147 (+) True G1479675
TU1692133 lncRNA upstream 176270 68224014 ~ 68225516 (+) True G1479670
TU1692263 lncRNA downstream 153 68408286 ~ 68408545 (+) True G1479722
TU1692268 lncRNA downstream 17350 68425483 ~ 68425951 (+) True G1479725
TU1692305 lncRNA downstream 61657 68469790 ~ 68470847 (+) True G1479757
TU1692317 lncRNA downstream 71478 68479611 ~ 68479914 (+) True G1479766
TU1692329 lncRNA downstream 87699 68495832 ~ 68496046 (+) True G1479778
XM_036950511.1 mRNA upstream 5958 68322187 ~ 68395828 (+) False LOC110494450
XM_021569518.2 mRNA downstream 804 68408937 ~ 68414206 (+) False LOC110494453
XM_021569519.2 mRNA downstream 804 68408937 ~ 68414206 (+) False LOC110494453
XM_021569520.2 mRNA downstream 804 68408937 ~ 68414206 (+) False LOC110494453
XM_021569521.2 mRNA downstream 804 68408937 ~ 68414206 (+) False LOC110494453
XM_036950518.1 mRNA downstream 1462 68409595 ~ 68414206 (+) True LOC110494453
TU1692079 other upstream 276006 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 738137 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1533906 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1566846 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1683098 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 526193 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 586499 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2242810 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2431487 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2770380 71178513 ~ 71180429 (+) True G1483346

Expression Profile