RNA id: XM_036950523.1


Basic Information

Item Value
RNA id XM_036950523.1
length 2800
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC101268937
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68601930 ~ 68625052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCAGAGCACAAGCAGCACTTTATCCGGCCCATCTCACTCACGGTAAGAGGAAATCCTAAACTTGTCTGGTCCACCGCTGcttcccttctctctcgctcacacacccTGGACGCTCACACACCCTGGACGCTCACACACCCTGGACGCTCACACAAACAGGAGGAGAATGGCAGTAGCAGCATCCACACAGAGAATGAATGAGACCCACAAAATACTGGCATTCACTTTGTTTCTCATCACCATCCTCTTTCACGGTGGTGTAGTTGCACAAGATGAGAGTGAATCAGATGTTGTCACTGGGCCCACACAGCCAGTTGATGTTGCTGAATTAATTCGTGGAGACGACATTGACACCACACAACCGGCAGATGAAGCAGATAAGCCCCAAGTCCAGATCATTGTATTCCCCAGTATTCCTGGCCTGGATCTGTCAGGCTTCTTACATGACACCACAGCGACTCCAGTCACCAAGGGGGTAGTGGAGACCACAGACATAGGGGAGGccacagtggaggctggtgaagcAGGAATCACAGACCCAGATGACAACCAGGAGACCCAGGCTCCCCAGCAGTTTCAGACCTCCCAATCCAGTGACACTGTGCTCATCCCAGAGttgtctggtgtctctctacaGGCTGATGTGATGTGTGTTGATAAAGAAGCTGTCCAGGACAGAGATGCAGTGAATCTGAAACTCAAGGCCTCATCCAGCTGTGAGGAGACCAGGTCTAAAATTGAGAGTGTGTTGGAGCACCTGTGTGGAGATGACTGTAAACTGGAGGTCTACCAGGAGGACAACTCCAATGAAATCCTGATCTCTGGCCAATGTATAGAAGCTGATGCAAAAGGAATGGCTGAGAAGTTCAACAATGACAACATTAAAGACAAGatTGATTTTGAGGAGGCTGTTCCTCGCTGGGGGAAGAAATCCAAACTGGTACTGGTCTCCCTGCTGCTCACTGGACTGCTCCTGGCTATTCTTCTCATCGCAGGCTACTACCTGAAAACCCACCGCCCACCACCCAAGGGAGCGAGACTGGCTGAAGAGGGTTTCCAGGTGTATGAGGAGAACCAGGCCAACACCCTGGTGTCGGTGGCCCCTCTGCAGTCACAGGAGCCCCTGTTGAAGCCCACCAACAATGGGGAGTTTCCTGAGAGCCAGCCACTACCCAACAACGGCCAACCTGCCACCCAGACCTCGGTTGCTGACACTGAGATGTGAACGAGCTCTGAATTACATCCCCAACGCCCCATTTTCATTCCTCCTgctcaccatcatcaccacattcCCAATCCCTCTCCCCTCATAGTGTACCTGGGGATACAAGACTCTAACACTAAACAACAATTCAATATCCAAGCCCACCTCACCTTACCCCATGCAACCCTTGACTCCCAGGATGATGacaatgatgaagatgatgactaTGACGATAATGACGAGGCCTGTAATGTGAAGAGAAGAGATTGTGATCACTGGCCTCTAACAGGTTTCAGTGGTGGTAGAGAAGGAGCCTAAACACTGAGTTTGGGGGACTGGACAGCAGGTTGAGACTGCATTCCAAAAACAATAATTGCTGCAAGAAATTAACAAGAAATCACCAAAATTGACAATTTGTGTTGCTGTTTCCAAATTCATGTATGAAGCACAGTGTATTCGAATTCTTAGTCTTTCAGATCTCAAATGGACTCATTTGAACTAAAAGGGTCATCGTAGTTTAAAGTATCGCTTGTATGATCTGGTGTGATCGTTTGCTTGAACCTCCTGTTTGAGGTAAAAAATTACATTTGGGTAACAGAAGCGGAGAAAGAGTGATACATGGAGATTATTTCAACCATTGAAGAGATTTTAATAGGCAGCTTTAAAATGGGTATCAATATGATTGGCTAGTGCAGAGATCAGAGTTGAATCATGTTGCCTTTTATCAAGGCCCATCATAATAGTTGTGTGAGATGGGCTGCCATATGTTTGTTTCATAATTCTGTaggcctacactcttagaaaaaaaaggtgctatctagaacctaaaagggttcttcagctatccccataggaaaaccctttgaaggtagaaccctttccacatagAGTTCTACATGgcacccaaaagggttctacctggaaccaaaaaagttaTCCtatgggacagccaaagaaccatttTGTAACCCTTATTTTTGTGTAGTGTGTCACAATTTCCATCATGACGAACATTATATTGTAgttgtttaaatgttttttttttctgttcTGACTCAGCACTGTGTCTTTGAGAATGTTGAACCAGGTAGACTAATCTTATCAAATCTGAAAAACAGACATAACCTGTCGGTTTTGTGTGGCGAAGCACTGCCTTTAAATATCTACAAAATCCCTAGTAACATGTTCAACATTCCCAAGGCCCTTTAAATGTCCTTAATAAATCAGTTCATCATGAAACATCAGTTACATGGATGGAAGATGTATTTTAGCTATTGTTTTTTGaatgactgattgttgtcataCAATGCTGCATGTGTAAATATGCCTACTTTCTCTGTTAGAAATATCTGTGTGCCCTATACATTTTGATTGTGTCATTGTTGCTACTGTTTCTTTGTCTACCTGAACAGGTAACACTAGCCTGATCATGTCACATAGCATGGCACACATACAAACTTGCATCTCTTTATAGACCCCACACAAGGACAATTTAAATGTATTATGATTCCTACAGCTGTTTTGGGCCTTTCATCAAATCCAACATCTGATCTTGGCTTAAATAAACCAAATTATTAATATGTCATTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692684 lncRNA upstream 3642 68597978 ~ 68598288 (+) True G1480103
TU1692683 lncRNA upstream 4571 68597135 ~ 68597359 (+) True G1480102
TU1692329 lncRNA upstream 105884 68495832 ~ 68496046 (+) True G1479778
TU1692317 lncRNA upstream 122016 68479611 ~ 68479914 (+) True G1479766
TU1692305 lncRNA upstream 131083 68469790 ~ 68470847 (+) True G1479757
TU1692702 lncRNA downstream 6756 68631808 ~ 68660462 (+) True G1480120
TU1692703 lncRNA downstream 16243 68641295 ~ 68648016 (+) True G1480121
TU1692705 lncRNA downstream 37116 68662168 ~ 68664035 (+) True G1480123
TU1692708 lncRNA downstream 81657 68706709 ~ 68708059 (+) True G1480126
TU1692694 lncRNA downstream 84794 68709846 ~ 68710426 (+) True G1480112
XM_036950522.1 mRNA upstream 8312 68526861 ~ 68593618 (+) True LOC110494461
XR_005037057.1 mRNA upstream 33676 68526861 ~ 68568254 (+) False LOC110494461
XM_021569534.2 mRNA upstream 114196 68484786 ~ 68487734 (+) True LOC110494460
LOC110493242 mRNA upstream 182006 68418717 ~ 68419924 (+) True LOC110493242
XR_002469276.2 mRNA upstream 183648 68415994 ~ 68418282 (+) True LOC110494454
XR_002469280.2 mRNA downstream 44080 68669132 ~ 68671682 (+) True LOC110494465
XM_021569563.2 mRNA downstream 302912 68927964 ~ 68950793 (+) False LOC110494470
XM_021569564.2 mRNA downstream 309255 68934307 ~ 68950793 (+) False LOC110494470
XM_021569562.2 mRNA downstream 309256 68934308 ~ 68950793 (+) False LOC110494470
XM_036950531.1 mRNA downstream 310078 68935130 ~ 68950793 (+) True LOC110494470
TU1692079 other upstream 476150 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 938281 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 1734050 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 1766990 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 1883242 66717373 ~ 66718688 (+) True G1477697
TU1692851 other downstream 309274 68934326 ~ 68983478 (+) False G1480254
TU1692848 other downstream 369580 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 2025891 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 2214568 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2553461 71178513 ~ 71180429 (+) True G1483346

Expression Profile