RNA id: TCONS_00046406


Basic Information

Item Value
RNA id TCONS_00046406
length 1761
RNA type mRNA
GC content 0.38
exon number 9
gene id XLOC_023462
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24101811 ~ 24163201 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATTCAATGACAAATCTGAATGCTGTAAACTGCAGTCTTTAGACCAAAATGTTTGtcctaaatttttattttaggtgaCCATGATTCAATTAAgatgtttgttaattttttttttctgaaaaattaAGTATTAGTTGCTCTTGAAGCGATATCTTAGTTTAAAATAAGAAGTGCTGGCAAATTTGTAGTTAAAAGGAAGTATACGAAAAGTTAAGGGACAACTGTCATATGTTAAAATGGGAATTGCGATGTCGATAAGAAAGAAGTGCTGCTTTTTACGGCTGATTTCATTCCAACAGGAGTACTACACTATCCTCACTTGGTTTATGTTTATTTCTTGTAAGTAATGATTCTTATATCTACACATACATGTTACCTCTTCTCCAGTTATTTAGGATATTCATCAGATAGGCAGTTATCACTGGACTTAGTCAATGTGGGTCGACAGCGTCTTGATTTCCTGCCCATGCTGGAGCATTCTGGCACTTACAAGGAATCAGCAGTACATTGTGGGACGTTTGCCCAAGAAATCATCACACTTGTACATCAGGTTAAAGAAAATTATTTTAGTGGCCAAGACATCCCACTCAATGAACGCTTTGCAAATGAACAGTATTATTCAATCCCTGATGAGattaaagaagaagaagaatatgaGGATGAGCTGGAAATGGAAAACTTGAGAGCACTCATGAATAGGCCTCAAAGAATGCCATCTTCAGGAGCTCTGGATCCACTTCAGAGACAACAGCCAGTCCCTGACCCTGGTGACCTCAGGTATGACTTGGAGCGAAGACGACAGCAGAAACTGGAGGCTGTGAAGATCACCATTGCTGGCGCAAACTTTACTCAGATGCCTTCTGAGAGTCAAGAGAGCGAGCCTCCCTATATGAATGACCTTCTTGAAGAACCGGATGAAAACTTCAGGTGGTCTGAACAAGAACATGAGCAGCAAAGGCAGTGGGATGCCCCACGTCAAAGAATGCCAGAGCCAACCCGACAGAACATTTTCAATAACGATGCTCCACGTCAAAGAATGCCAGCAGCTACCAGACAGAACGTTTTTAATAATGGTTCACGTCAAAGAAAACCAGAACATCCCAGACAGAACTTCTACCCGAGGGGCAACCGTACGGGCAGACAGCGTGGAAGGAGGAATTGAAGTTGCTTTAGAAAAGGTGGCACTTTGAGGAGAAAGTGAACATTTCAAACCTGAGGTCACACGCACACTACATGCTTTCACtgtttctgtttttacattagaACCACTAAGACCATAAATCATTTATTGTGCGTCAGATTCCTTTATTGCTTTTCACTGATATTACGCTTGTGTAATCTTTCTCATCCATGTCTGATTGACCCACTGCCATTTTGTCATATCTGAAAGAAAGCTGTTTTAAATGAACAGCTTATAAAGAAagattaaaaagtttaaagtggAAGAACTCTTTGGGCAAATATCGTTTTATCACCCTCAAGCATTAATGTTCATCATTGTCTATGGAGAGATTAGTTTTTGGTTTAATATTCCACATTTTGACGTCAGGCACAGTtgaaattttatttcaaatttaaatggCCCCTTCATAGCAGTTCACACCAGTTAGATTTGCTTTTatactaaaatagattttttttttttgtatctgcctatataatttgaaataatttcATATTCTCTGTATTCTGCTGTGTAAACTCCAAGTAGAAAttcttgtgtaaataaaaaaaaaattatttgtgccAATGTTTTCAAA

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-55 Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex.

Ensembl:

ensembl_id ENSDART00000024606

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047193 lncRNA downstream 2932 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00047192 lncRNA downstream 2937 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00046860 lncRNA downstream 344514 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 349236 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046389 lncRNA downstream 458906 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00046418 lncRNA upstream 55296 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 304650 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047194 lncRNA upstream 304650 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046424 lncRNA upstream 304650 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046861 lncRNA upstream 307621 24419295 ~ 24451803 (-) False XLOC_023466
TCONS_00046404 mRNA downstream 41179 24036195 ~ 24060632 (-) False XLOC_023460
TCONS_00046405 mRNA downstream 41351 24052745 ~ 24060460 (-) True XLOC_023460
TCONS_00046403 mRNA downstream 63011 24035863 ~ 24038800 (-) False XLOC_023460
TCONS_00046402 mRNA downstream 102914 23988970 ~ 23998897 (-) True XLOC_023459
TCONS_00046399 mRNA downstream 127252 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046411 mRNA upstream 6519 24118193 ~ 24162930 (-) False XLOC_023462
TCONS_00046412 mRNA upstream 9098 24120772 ~ 24146875 (-) False XLOC_023462
TCONS_00046413 mRNA upstream 9098 24120772 ~ 24163201 (-) False XLOC_023462
TCONS_00046416 mRNA upstream 52553 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046417 mRNA upstream 53314 24164988 ~ 24168475 (-) False XLOC_023463
TCONS_00046400 other downstream 124526 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 828452 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1729711 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1792753 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 2004048 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046414 other upstream 24228 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 24254 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 896643 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2247565 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 2250072 26361746 ~ 26368871 (-) True XLOC_023496

Expression Profile

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