RNA id: XM_021569563.2


Basic Information

Item Value
RNA id XM_021569563.2
length 3569
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110494470
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68927964 ~ 68950793 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGGGGGCGCTGACAACCTTTTCCTATTGCAATCCAGGATTGGAGCAGGGCAGGAATCCAGTGCCCAGCAGGCACTCAAACTCAACAACAAGAGAGCCGGGGGGTTGGGCCAGCCTTCCGCCATTTTAAAAGTCTAACTATCAATACGTGGCTAGTTAGCTTCTGACAATTATAAAATGTCTAACCGACAACACCAACCGATTCATATAACTTCATATTAATAAAATAAACCCCATCTTTCACATGAGTCGCATAACATTGCGAAAGTTTTTCTTCCAATTTGCCCATGGCAGCCCAGGACGGATTTGTCCTCCTTTCCCTTAGAATTTCCTTCCGCTTCCAATCTCATCACAAATCCCAAGATAAGTGGCTAGCAGCTAGCGTTCTTAAAGTAAATCTGCATGTCGATGTTTCCACGGACCAAGTTCATTTGACTTCATATCAGACAGATGTGGATCGTACAAAGTGTTCTGACTAAACATATGAATTATCTAGCTACCAAAGTATGATTATTCCGAAATATGTTTCGAAGGAACAACAATAGCGATAAAATATAGTGAATCCTGCCTCTTTAGAGCATGTTTACAGCTGCCCTATTGGAGTGCCCCTCCTAGCTCCAAGTACTTCTCTGTGCAATGCAGTCCCAGAGTGCAGTACAGGATCACCCCACCCCCACTGGAGAGTGGGACCCTCCCCACCACTCTCAATGGTAATACAATGCTTCTATTCACCATGGACACTGCCAGCGAAGTGGGAAATGATAGCAAGTTATCGGTCATGTATTATGGAGAGAAGACGGAGGTGTTAGGGAAAGCTGTCGTTCACCTCACCGCTGTTGAGATTTCTCTGGATGTAGATGCTGATCGAGATGGCCAGGTGGAGAGGAACAACCCCAACAAGGGATCCTGGATGTGGGGGCCTAAAGGCCATGGTGCCATCCTACTGGTCAACTGTGACTCAGAACACACCTATGGGAAGAGGCGAGACAGTGAGCGTGCTGAGGTCAGCAGGGTCTCAGATCTGAAAGACATGTCCCCAATGGTGCTGCGGACCAGTGGCCCTGCCAAGCTCCCAGAGGGCTACAAGCTGACCATGCACATCTCCCAGGGGGATGCAGAGAGTGTCAGGGTCTTCAGAACCAGGTCCACAGCAGGCATGCACCAAACACTGAAAAACCTGTTCTACAAGAGCTTTGTGAAGGACTACCCGCTGGTGCTGGGCAGTGAGGATTTGTCCAAGGAGGTCCCGTACCTCGGGGGAAACGCTGAGATTAATTTCTACGTTGAGGGCCTGAGATTCCCTGACAAAGACTTTGAGGGCCTCATCAGCATCAGCCTCAGCCTGCTGGAGCCCAGCTCTCAGGGCTTCCCTGAGACACCTATCTTTACAGACAGGGTGGTGTTCCGTGTGGCTCCCTGGATCATGACACCCAACACACTCAACCCTCTGGAGGTCTTCGTCTGCAGCACATCTGATAACTACCAGTTCCTAAAGGGAATGAGGAGGCTGGTGGAGAACAGTGGGTACAAGCTGAAGGTTTGTCATGAGTACATGAACAGAGGAGACCGCTGGATGCAGGATGAGATAGAGTTTGGCTACATTGACTCTCCTCACCAACGTTTCCCTGTTGTGCTGGACTCCCCCCGAGACGGAGAACTACAGGATTTCCCTTATGATGTGCTACTGGGCCCAGACTTTGGCTATGTGACGAGGACAGCATATGATGAGGAAGTGAGCAGCCTGGACTCGTTTGGTAACCTGGAAGTTAGCCCTCCAGTTATTGTAAATGGAAAAATCTACCCTCTGGGCAGGATCATAATTGGAGTGGCTTTCCCCACGGCAACCAAGGGCCGCAACATGACCAAAGTAGTGCAAGACTTCCTTTGGGCACAGAAAGTCCAGGAGCCCATTGCACTGTTCTCTGATTGGCTTCTGGTTGGGCATGTGGATGAATTCATGACTTTTGTCCCAGCTCCTGACAAAAAGGGATTCCGGCTGCTGCTCGCCAGCCCCGACGCAGGCTACAAACTATTCAGAGGCTTACAGAACGACGGGCATGGACAAGCCAAAATGTTTGACGGTCTTGGAGCAGAAGAAGAGATTACGGTAGATGAGATTTTGAGTGATGACAAACTTGGGGCAGAAAACAACTATGTCCAGAGCTGTATAGACTGGAACAGGGATGTCCTTAAGAGGGAGCTGGGTTTAGACGACGATGATATCATTGATCTGCCCATCCTTTTCCATGTGATGGAGGAGAACAGGGCAGTGGCCTATTACCCAGACATGGTGAACATGGTTGTGTTGGGGAAGAACCTGGGCATCCCTAAACCATTTGGGCCCAAGGTGGATGGCCGCTGTGCCCTGGAGGCAGAGATGACCTCCCTCATGGAGGGCCTGGGACTCAGCTGCACATACATTGATGACTTTGCCTCCTACCACAAACTGCTGGGAGAGGTTCACTGTGGCTCTAACGTTCGCAGGGAACCCTTCTCCTTCAAGTGGTGGAACCTGGAGATGTGAGGGATTTGGGGCAAGGCATGGTTGTAGTTAGAAAGAGGGAATAAGGCTTGACGTAAACAGCAGCAACATTCGCCAGCAGCAGTCATCTTCAAACAACAACAGTAGTCCTTGTACTGTATTACCCCtttgtctttattaaacatgtatttgCCTTTTTTTACAAAAGGATGAAAAACTATATTTATAAACAAGACTTTCGGACTTTAACAAGGGCTTAAGGAGATTATCAACGAGAACAGAAATGCAATCATCTGAATTAAGCACATTGTAGGCTGAATCTGTTGTTTGGATTGTCTGCGTGCTCAATCCAAGTGTTGTATTTACAGGTACTAAAACCAGTACAGATTAACAGGACCACAGAGAAATGTGCAAGTGTAATTTGGAGCCTTGAAGACTTGTGagagttttaatacattttaatacatttattttaagcTTTGagatgaaaatatattttgaatttcaGTGCCTGGAATGCACACTATGACTCCAAAGGCTCTCTTAACCTGATGTAACTTCCAATCACATTTCAATTAATAGTATTTTGTTGAATCATAATCTTTAGAATGGTGTTTGATAATAATACATGATTAAATAAATGTCAGACTAACTGTATTTTGATGTAGTGTTCCTTACTTACACAGAGATACTTCAGATTCAACAAAAATTTCAAAATAATTGTAAAAGAAGGTTTATGCACAACTGACAAAGTGCAACTAAATTCCATATTGGTTCTTGTtaatttaattgaaataaatAGTAATGGAAACTATGCCTTCATATCAGGTCTTTTCATTATATAAATCTGAGATGAGGGAAAATGTCTAATCAGGAAATGTAAAACATTACAACAAGATACAAAGGTTCCAATCATTGAGAGCAGATGTCTACAAATGAATACATATATCTGTTTAGTTTTACATTCAAACCAGTTGGTGATAGATTCCAGTTGGCGATATCCACCATGGGATAGATTCCTTATATGAAAGGGGATACCCTCCTACAAAGCAGCTTACTTAACAATCATTAAAAAGGCCACTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692762 lncRNA upstream 169278 68758420 ~ 68758686 (+) True G1480174
TU1692758 lncRNA upstream 172279 68754789 ~ 68755685 (+) True G1480170
TU1692750 lncRNA upstream 183838 68743549 ~ 68744126 (+) True G1480162
TU1692748 lncRNA upstream 187155 68740575 ~ 68740809 (+) True G1480160
TU1692745 lncRNA upstream 189948 68737793 ~ 68738016 (+) True G1480157
TU1692854 lncRNA downstream 3656 68954449 ~ 69000797 (+) True G1480255
TU1693390 lncRNA downstream 181154 69131947 ~ 69132153 (+) True G1480732
TU1693427 lncRNA downstream 214202 69164995 ~ 69167365 (+) True G1480768
TU1693514 lncRNA downstream 358904 69309697 ~ 69309963 (+) True G1480846
TU1693519 lncRNA downstream 364425 69315218 ~ 69315569 (+) True G1480851
XR_002469280.2 mRNA upstream 256282 68669132 ~ 68671682 (+) True LOC110494465
XM_021569536.2 mRNA upstream 302912 68601930 ~ 68625052 (+) False LOC101268937
XM_021569537.2 mRNA upstream 302912 68601930 ~ 68625052 (+) False LOC101268937
XM_036950523.1 mRNA upstream 302912 68601930 ~ 68625052 (+) True LOC101268937
XM_036950522.1 mRNA upstream 334346 68526861 ~ 68593618 (+) True LOC110494461
XM_021569560.2 mRNA downstream 26907 68977700 ~ 68999543 (+) False LOC110494469
XM_021569561.2 mRNA downstream 30519 68981312 ~ 68999543 (+) True LOC110494469
XM_021569572.2 mRNA downstream 286913 69237706 ~ 69281938 (+) False LOC110494475
XM_021569573.2 mRNA downstream 286913 69237706 ~ 69281938 (+) False LOC110494475
XM_021569574.2 mRNA downstream 286913 69237706 ~ 69281938 (+) False LOC110494475
TU1692079 other upstream 802184 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1264315 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2060084 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 2093024 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 2209276 66717373 ~ 66718688 (+) True G1477697
TU1692848 other downstream 43839 68994632 ~ 68999183 (+) True G1480254
TU1695519 other downstream 1700150 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1888827 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2227720 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2431151 71381944 ~ 71382272 (+) True G1483638

Expression Profile