RNA id: XM_021569561.2


Basic Information

Item Value
RNA id XM_021569561.2
length 5060
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC110494469
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 68977700 ~ 68999543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTGTATTCAGAGGAGGAGTCAGACCTCTTGTTCTCAACAGACTCTCCTTTTTATCATTAAAAGCTGTCAATTCATATTACTCCATTGCAACTGAATTCAATGGGTTATAAGCAGTTATTATGGCCTATGATTTCCAAGTTAACATGATACAAAAAAGTGGTAAGCCCAACACAAATCGCCAACCTGGAGAATTAAACATATTGTGGGACTATCTTGACTACGACTGCAGTTAGTTTATCAGACTCTCCACATGGTATGATTGCACAGCAGATACAGATGGTTTCACAGCATTGGTGTGTAACAACTTCAAATTCTTGTTAAGAACTTCTCTTTTTGCTATTGTTTAGAGTAGCCTAGGCTCTGTTGTTCGGGGCAaatactgtcttgtctcattacgcacacctggttcccattccccctgattagtatgttatatatgtgccctctgttccccattgtcctGGTTGATTATTGTCCCATGTCCGTTCGTCTTGTGCTCTGCTGAATCCGCTTTCATGCCACGTGGTTTGTGCAGTTGTTATTATGGGtttcttttgtttgggttacatccctacgttatatatacagtacgtgtttgttttgggcttcgtccaAATACTTTGACACATAAGTACAATCCTTTTTGCCAGTATTCTTGTGTAGGTTGACAGTCCAGTATTTCTCCCTCTTTGGTACGTTACTCATGTAGAAGACATCATACCTCTCTGATTACTTTAGCAATGTAACTTTAGAACTAGCACTGCCACCTCTTGCTTCTGGAAATAGGGGATAATGAACTGCACTCACGGATGGTGCTCTACTGCAGTATAGGAGTGCCCCTCCTAGCTCCAAGTACTTCTCTGTGCAATGTAGTCCCAGAGTGCAGTACAGGATCACCCCACCCCCACCAGAGAGTCGGACCCTCCCCACCACTCTCAATGGTAATACAATGCTTCTTATCACCATGGACACTGCCAGCGAAGTGGGAAATGATAGCAAGTTATCGGTCATGTATTATGGAGAGAAGACGGAGGTGTTAGGGAAAGCTGTCGTTCACCTCACCGCTGTTGAGATTTCTCTGGATGTAGATGCTGATCGAGATGGCCAGGTGGAGAGGAACAACCCCAACAAGGGATCGTGGATGTGGGGGCCTAATGGCCATGGTGCCATCCTACTGGTCAACTGTGACTCAGAACACACCTATGGGAAGAGGCGGGACAGTGAGTGTGCTGAGGTCACGAGAGTCTCAGATCTGAAAGACATGTCCCCAATGGTGCTGCGGACCAGTGGCCCTGCCAAGCTCCCAGAGGGCTACAAGCTGACCATGCACATCTCCCAGGGGGATGCAGAGAGTGTCAGGGTCTTCAGAACCAGGTCCACAGCAGGCATGCACCAAACACTGAAAAACCTGTTCTACAAGAGCTTTGTGAAGGACTACCCGCTGGTGCTGGGCAGTGAGGATTTGTCCAAGGAGGTCCCGTACCTCGGGGGAAACGCTGAGATGAATTTCTACGTTGAGGGCCTGAGATTCCCTGACAAAGACTTTGAGGGCCTCATCAGCATCAGCCTCAGCCTGCTGGAGCCCAGCTCTCAGGGCTTCCCTGAGACACCTATCTTTACAGACAGGGTGATGTTCCGTGTGGCTCCCTGGATCATGACACCCAACACACTCAACCCTGTGGAGGTCTTTGTCTGCAGCACATCTGATAACTACCAGTTCCTAAAGGGAATGAGGAGGCTGGTGGAGAACAGTGGGTACAAGCTGAAGGTTTGTCATGAGTACATGAACAGAGGAGACCGCTGGATGCAGGATGAGATAGAGTTTGGCTACATTGACTCTCCTCACCAACGTTTCCCTGTTGTGCTGGACTCCCCCCGAGACGGAAAACTACAGGATTTCCCTTATGATGTGCTACTGGGCCCAGACTTTGGCTATGTGACAAGGACAGCATATAATGTGGAAGTGAGCAGCTTGGATTCGTTTGGTAACCTGGAAGTTAGCCCTCCAGTTATTGTAAATGGAAAAATCTACCCTCTGGGCAGGATCATAATTGGAGTGGCTTTCCCCACGGCAACCAAGGGCCGCAACATGACAAAAGTAGTGCAAGACTTCCTTTGGGCACAGAAAGTCCAGGAGCCCATTGCACTGTTCTCTGATTGGCTTCTGGTTGGGCATGTGGATGAATTCATGACTTTTGTCCCAGCTCCTGACAAAAAGGGATTCCGGCTGCTGCTCGCCAGCCCCGACGCAGGCTACAAACTTTTCAGGGGCTTACAGAACAACGGGCATGGACAAGCCAAAATGTTTGACGGTCTTGGAGCAGAAGAAGAGATTACAGTAGATGAGATATTGAGTGATGACAAACTCAGAGCAGAAAACAACTATGTCCAGAGCTGTATAGACTGGAACAGGGATGTCCTTAAGAGGGAGCTGGGTTTAGACGACGATGATATCATTGATCTGCCCATCCTTTTCCATGTGATGGAGGAGAACAGGGCAGTGGCCTATTACCCAGACATGGTGAACATGGTTGTGTTGGGGAAGAACCTGGGCATCCCTAAACCATTTGGGCCCAAGGTGGATGGCCGCTGTGCCCTGGAGGCAGAGATGACCTCCCTCATGGAGGGCCTGGGACTCAGCTGCACATACATTGATGACTTTGCCTCCTACCACAAACTGCTGGGAGAGGTTCACTGTGGCTCTAACGTTCGCAGGGAACCCTTCTCCTTCAAGTGGTGGAACCTGGAGATGTGAGGGATTTGGGGCAAGGCATGGTTGTAGTTAGAAAGAGGGAATAAGGCTTGACGTAAACAGCAGCAACATTCGCCAGCAGCAGTCATCTTCAAACAACAACAGTAGTCCTTGTACTGTATTACCCCtttgtctttattaaacatgtatttgcctttttttttacaaaaggatGAAAAGCTATATTTATAAACAAGACTTTCCAACTTAAACAAGGGCTTGAGCGGAATATCAACGAGAACAGAAATACAATCATCTGAATTAAGCACATTGTAGGCTGAATCTGTTGTTTGGATTGGCTGAGTGCTCAATCCAAGTGTCTTGCATTTACATGTACAAACACAGGTACAGATGAACAGGACCACAGAGAAATGTGTAAGTATAATCTGGAGCCACCAGAGGGTGTGATCCAACTATTCAAGCATTTCTGAAAACTTGTGagttttaatacatttattttaagcTTTGAGATGAAAATTGTGTTTGATATATTTTGAGTTTTAGTGCCTGGAATACACACTGACTCCAAAGGCTCTCTTAAGCTGATGAAAGGTTACTTTCTCATCTTTCCAATCACATTTCAATTAATAGTTTTTGTTGAATCATAATCTTCAGAATGGTGTTTAATAATAAATAGTAGTATTTTGATGTAGTGTTCCTTACTTACACAGAGATCCTTTAGATTCAACTGAAAGATTTCCAAAGGAGTGTAAAAGGTTTATGCATTAATGCCACAACTGACAAAGTGCAACTAAATTCCATATTGGTTCTTGTTAATTTAATTGAAATAAAAAGTAATGGAAACTATGCCTTCATATCAGGTCTTTTCATTATATAAATCTGAGATGAGGGAAAATGTCTCTAATCAGGAAATGTAAAACATTACAACAAGATACAAAGGTTCCATTCATTGAGATCAGATGTCTACAAATGAATACATATATCTGTTTAGTTTTACATTCAAACCAGTTGGTGATAGATTCCAGTGGCGATATCCACCATGGGATAGATTCCTTATATGAAAGGGGATACCCTCCTACAAAGCAGCTTACTTAACAATCATTAAAAAGGCCACTTCAAGACTTGTCACAGTGTAATTCTTTTTAAAAACCAAGTCAGATTTTCAAATGATCAGCAATTAATTGAAAATGTAGTGCCGGTTTCCACATCTACACTTGTATCCCCATATTTCTCTATCGAAACTGATGTAAAGAAATAATGACTCTTTATCTGTCTGCTTTTCTAGAGAAGTTTGACTGGTTTGAAGAAACAATCTATTTCCAGCATGGTACTGTACAGTTGACATGGTTTTGCAAGCAGATTTACACCATTCACCATGCATACACATCCAAACACATACTTTAAATCAAACTAGaggttttaaaaaataaactgaagACAGTAGTCACTGGACAATAGCTTGGCTTTGGAGGCTGTGTGCTTTGGTTAGGTCACCTTGGAGGAATGTCTGACTGTGTGGTACTATCTACAGTATGGGACAGTGATGAAGACTGATGAGTAATTTAGTTTGGACACCAGACCTTATCGGTAATTCAATACTTCATGTTTTTTTCCTCAGTTAAAAGGGGCAATCTACGATTGCTACATagcttttttttacatttcaattAATTATATATACCTATTGATTCTTGAATATTACTTATAAATGCTTCATgcgcttagttcaactgtcgtaccccatcaaaaCTCAAAACATAAGCGTGTTTTACTCATTAGTTAGTAAACAAGGTaactgtaaacaaacactatatagcctcaacatggttaaaagtATAATTTTgctatcatggatggtcagtccttgcatccatagctctgtctaggaatttgagagtggttacttTTCGCCAACCCCATCACTCAGCTGGTTATCGATACAGTGGCGGGGTAAagactttgttattgtttgaactgcagattacCTCTTTAAATGGCCTGAAATACGTTGACTATACTTATGGAGTCAATAAAATATTGTCCATTCATCAACATAATCTGTCAACTGTAATTGTACAGTTTGTCAGGGGAAAGTTTGTCAGCAGCAGCATGATGATAAAAGTACCTTCTACCAAAAACATGTAACATTTACTAAATATTTCTAGTCAACATCCACCATTACACTCTTAATTGACCATTAATAAAACACAAGGCTTGGTGTGACATCAAAGGATCCGGGACACCAAGAGTAACAAATGTACAGCATCATGGTTGGACGTGAGGTTGATGGGAGCAATAATGTCAGTTCTTCCAACAATGACAACAGGACAACACCCTCTTATCCT

Function

GO: NA

KEGG:

id description
K01481 E3.5.3.15; protein-arginine deiminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1692876 lncRNA upstream 49845 68931226 ~ 68931467 (+) True G1480277
TU1692875 lncRNA upstream 50214 68930836 ~ 68931098 (+) True G1480276
TU1692762 lncRNA upstream 222626 68758420 ~ 68758686 (+) True G1480174
TU1692758 lncRNA upstream 225627 68754789 ~ 68755685 (+) True G1480170
TU1692750 lncRNA upstream 237186 68743549 ~ 68744126 (+) True G1480162
TU1693390 lncRNA downstream 132404 69131947 ~ 69132153 (+) True G1480732
TU1693427 lncRNA downstream 165452 69164995 ~ 69167365 (+) True G1480768
TU1693514 lncRNA downstream 310154 69309697 ~ 69309963 (+) True G1480846
TU1693519 lncRNA downstream 315675 69315218 ~ 69315569 (+) True G1480851
TU1693520 lncRNA downstream 316754 69316297 ~ 69316738 (+) True G1480852
XM_021569563.2 mRNA upstream 30519 68927964 ~ 68950793 (+) False LOC110494470
XM_021569564.2 mRNA upstream 30519 68934307 ~ 68950793 (+) False LOC110494470
XM_021569562.2 mRNA upstream 30519 68934308 ~ 68950793 (+) False LOC110494470
XM_036950531.1 mRNA upstream 30519 68935130 ~ 68950793 (+) True LOC110494470
XR_002469280.2 mRNA upstream 309630 68669132 ~ 68671682 (+) True LOC110494465
XM_021569572.2 mRNA downstream 238163 69237706 ~ 69281938 (+) False LOC110494475
XM_021569573.2 mRNA downstream 238163 69237706 ~ 69281938 (+) False LOC110494475
XM_021569574.2 mRNA downstream 238163 69237706 ~ 69281938 (+) False LOC110494475
XM_036950538.1 mRNA downstream 238264 69237807 ~ 69281938 (+) False LOC110494475
XM_036950537.1 mRNA downstream 239526 69239069 ~ 69281938 (+) False LOC110494475
TU1692079 other upstream 855532 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1317663 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2113432 66867525 ~ 66867880 (+) True LOC110494429
TU1690057 other upstream 2146372 66833572 ~ 66834940 (+) False iffo2b
TU1690012 other upstream 2262624 66717373 ~ 66718688 (+) True G1477697
TU1695519 other downstream 1651400 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1840077 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 2178970 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2382401 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 3305180 72304723 ~ 72305412 (+) True G1484782

Expression Profile