RNA id: XM_036950539.1


Basic Information

Item Value
RNA id XM_036950539.1
length 3977
RNA type mRNA
GC content 0.51
exon number 15
gene id LOC110494475
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69237706 ~ 69283003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGACTTCAGCTGCATGAGCCCACCAGCCCAGGCCTCTTCTCTTCTACCAGGGGGATATCAGTTCAGGAGAGCTTGTCCAAAGGGCAGCAGGGGAAGGGCCAAACGAGGAGAGGGCACCATGGACATTGAGCAGGGGCCTCCAGCCTCTAGTGCCAGCAGCACTGGAGCCACTGCCACCAGTACCAGTACGACCAGTAGCAGCACTACCACCAGCAGCAACAGCACAGGAAGACAGGCTGTGCCTCAGATCTCTGTGTACAGCGGGATTCCTGACAGGCAGACGGTTCAGGTGATCCAGCAGGCATTGCACCGGCAGCCCAACACGGCTGCGCAGTACCTGCAGCAGATGTACGCAGCGCAGCAGCAGCACCTCATGCTGCAGACAGCAGCCCTCCAGCAGCAGCACCTGAGCAATGCACAGCTCCAGAGCCTAGCCGCCGTACAGCAGGCCAGTATTGCGGCAGGAAGGCAGAGCTCCACCCAAAATGGCACTTCATCCCAGCAAACAGGATCATCCCAGGCCACAGTGAGTGCAATTAACCTGACCACGTCCCCGGCTGCAGCCCAGCTGATCAGCCGAACCCAGAGTGTTAGCTCCGCCCCAGCCGGCAGCATCTCCCAGCAGGCCGTGCTCCTGGGCAGCACGTCCAGCCCCACCACCCTCACTGCCAGTCAGGCTCATATGTACCTGCGTGCCCAGATGCTCATCTTCACACCTACGGCCACAGTGACTGCAGTCCAGTCTGAGAGCTCCACGCAGTCCTCTGGACAACAGTCTGCCCCCTCACAGGTCCAGAACCTGGCTATCCGTAGCCAGCAGGGGGCGTCCATGTCCTCCTTTCAAACACACAACCTCCAGGCCCTCAGCCTAAAGCAGACCCCTGTCGCCATCCAGCCCTCTCCCCTGCTCAAAAACCCCAGCCAGGGGAGCCGGGGCTCTGGGGGGAAGGGCAGCTCATCCGACGTCCCCTTAGATGGGAGCAAGAAGGGGGAGAGCATTGTGACAGAGGTGTGCGCTATAAACATGAGTCGCAGCATCACAGCTTTGAGTGGCCAGCCTCTCAGCACTCCAGCATACACCCAGATACACCCTTCCCACTCCCTGGTCCATCAGCATAAGCAACAGCAGTTTGTGATCCAGCAGACCCATGCTTCCCAGAGGACCCAGGGACAGCTACTGCAGACTGCCTCCATCCAACCCCACCTGCAGACTCCCTCCCTGGTCACCCAGTCCCCCAGCCAGGCAGGCCCTGTCCCTGTGCTGCCCAAGCCTGCCTCTCACCACCAGCCCTCTACACCCAGCCAGCAGGCAACCATCTTCCACTCCACCATCAGCCCACATGCTCTCCACTCCAGCCTGAGCCAGACCAAAGCCCAGCCAGTGCAACTCACAGCCATCAACCTCCAGATACAACCAGCACTCTCACAGGCTTCCCGATTGGTTCAGGACAGTAAAGGACAGGAGAAGCCAAAGTCATTGGTGGTCAGGGAGCTCTGCCCAACTCCCAGTGTAGAGCAGCAGCCCACCCCATTTACCCCCTCTGCCCCGTCTCCACCACAAGCCACCAAGCCAGCAGAGCAGCCCAAGACTGACCCAGTTATGCCCATCAGCCAACCACAAGGAGTCCCTACTACCAAGAGGTTGAATGCTGCACCTGAGACACCACCCCCAGCCATGACATCAGGAAATGAGAACGAGGCACCCACTGTGACCGGCAGCACCCCCCAGAATGGAGAGAACAAGCCACCCCAGGCCATCGTCAAGCCCCAGGTCCTCACCCACGTCATTGAGGGCTTTGTCATCCAGGAGGGTGCTGAACCCTTCCCTATTGAGCGGTTGCCTGTAATGATGGACAGCCCAAAGAAGCTGCATGAACAGCTCTCCTCTGACCCAGACAAGACCCCTGTTAGTAACCCCACCAACACCACAGACTCTGAGACAGAGGAGCTGACCCCTCAAGAATTAAAAGACCAAGAGGATTCAGATGCCCCCAAACTGAGATGTGAATTCTGTGGCTGGGTGGACTTTGCCTACAAATTCAAGGGGTCAAAACGGTTCTGTTCCATGGTGTGTGCGAAAAGGTATAATGTTGGGTGCACTAAGCGGATAGGCCTCTTCCGTCCAGAGAGGAGCAAAGCATCCAACCGCTGGCGCAGAAGGTCACACAACAGCTGCCGCCAGAGTGTCGAACCTAAGAAGCAGAAGCTTTCCCCTACACCTCAGCAGACTCAGGGAGGTTCAGTGtcctccccactcccctcccaaCCCAGCCAGGAGGAGTCCAGCCCCTGCTCAGACATGTCCAGCTATGAGGAGCCTCCGTCACCCCTGTCAGGAGCCAGCTCAGGTCCCACAGCACCCCAGGCGTTGTCACACCAGGCAGGGAGAGGCTCAGACCAAGAGGCCCCCCGAGCCAGAGAGCTGCCACTCCTCACTCAGCACTTCCTGCCCAACGACTCCACCAAGTGGAATGTAGAAGAAGTCTACGAGTTTATCCACTCCCTTCCAGGCTGCCAGGAGATAGCAGATGAGTTCCGCTCGCAGGAGATAGATGGACAAGCCATGCTCCTACTGAAAGAGGACCACCTTATGAGTGCCATGAATATTAAACTGGGACCTGCACTTAAGATCTACGCACACATCAACATGCTCAAAGACTCTTAGCCATGATGGGTCGATATAGTGCTGGTTTGTTGTATGTCTGTGTTTGGTGTGCATATGTCTGTGTTTGGTGTGCATATGTCTGTGTTTGGTGTCTGTGTTTGGTGGGAAGGAGTCACACTCTGGGACAAGACAAAACATGTCGCCATCGCACTGATGACTACCTGACCTCTGCACTACCATCTTTCATCCCACCTTTGGATTGGCTACTTCACGGTACGTTTAGCCATGGCCTGCAAACAGACAACTGATCATCCCTTTGGCTGTCAAAAAGAACAGTTTACAGTAAATTTAATGGACTGACTGCCTTAGAATAATGGCACTAATAGTGCTAAAAGCACTGCAAGGATACATTTGAGTCTGTTTGAAAAGAGATGAGGGTATATCTGAAATACTTCCTCCTGAGATATAATTGTGAATTGAATTATCATTGACTGCATATGTAGTATGTTTCTTTTGGTGCTGATCTGATGTTATTGACAGCCATACATGTACTTTGTGTGTCCTGGGACAAATGAAAGCCGTCGCCAGTCTAAGTCTTATCCAACAGATGCTAAGCTCTATTTTGTAATGATCACCAactatacacatacatacactgcaTGGCCTTTGACTTTGCTCAGAGCAGTTTGCGCTATGCTTTGTGACATTGATTTTTGTTTGTGATTTTGGTTTCATGTACAAAATTGTTATTTCCCTGTATATTGTATTGGTTTAGACACACAACCTTTTTTCAAAATGTGATTTACCAAGACATCATGCCATACCTTATTTATTACTGGGTCAGACTTCACATCCTGTGAGATCTTCTATGACAGTATGTGTTGACCCTACCCTAGTGGTGAAAAGACCACTAGGAACTCACTTTTGATATTCACCATCATACCTCTTACTCCACTAGCACTTCAAATTATTGGTTCTGTTCTCTTTAGTTTTAATTAATACAACCAAAATGACTTGATTGGGTCTGAAATTAATAAATGAGGTTTGTTTTGAGTTGGGCTATTTTGCTCCTGAGAAAGACTTAGTTCTGTATGAGTCTAAAGCTGCCTGTATTTTTGCTTTTAAGTTATCCATAATTGTTATGAAAATCAAGTATTTAGAAATATGCAAACATGTAAATATCATGGATTGAGGGAAGTGTCTTTTTTAGTGTTTTTATAAAAATCTTGTTTACTTGTGCTTGTTGTCATGTAATGAATGGTTGattgtgtttttaatgttttgtttgAGAATACTCTGTCAAATGCCTGTATTTATCAAATAAATGATTTTGTTATGCAACATTTTTCAATGATTAAATAATCTGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693427 lncRNA upstream 71729 69164995 ~ 69167365 (+) True G1480768
TU1693390 lncRNA upstream 106941 69131947 ~ 69132153 (+) True G1480732
TU1692854 lncRNA upstream 238297 68954449 ~ 69000797 (+) True G1480255
TU1692857 lncRNA upstream 255359 68937277 ~ 68983735 (+) True G1480258
TU1692852 lncRNA upstream 256777 68934326 ~ 68982317 (+) False G1480254
TU1693514 lncRNA downstream 26694 69309697 ~ 69309963 (+) True G1480846
TU1693519 lncRNA downstream 32215 69315218 ~ 69315569 (+) True G1480851
TU1693520 lncRNA downstream 33294 69316297 ~ 69316738 (+) True G1480852
TU1693521 lncRNA downstream 35033 69318036 ~ 69318261 (+) True G1480853
TU1693523 lncRNA downstream 39787 69322790 ~ 69323026 (+) True G1480855
XM_021569560.2 mRNA upstream 239551 68977700 ~ 68999543 (+) False LOC110494469
XM_021569561.2 mRNA upstream 239551 68981312 ~ 68999543 (+) True LOC110494469
XM_021569564.2 mRNA upstream 288301 68934307 ~ 68950793 (+) False LOC110494470
XM_021569576.2 mRNA downstream 5801 69288804 ~ 69296982 (+) True LOC110494476
XM_021569584.2 mRNA downstream 65882 69348885 ~ 69354495 (+) True LOC110494479
XR_005037269.1 mRNA downstream 68440 69351443 ~ 69351518 (+) True LOC118940683
XR_005037268.1 mRNA downstream 70817 69353820 ~ 69353895 (+) True LOC118940682
XM_021569588.2 mRNA downstream 77276 69360279 ~ 69362518 (+) True LOC110494481
TU1692848 other upstream 239911 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 255616 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1113314 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1575445 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2371214 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1367940 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1556617 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1895510 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2098941 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 3021720 72304723 ~ 72305412 (+) True G1484782

Expression Profile