RNA id: XM_021569576.2


Basic Information

Item Value
RNA id XM_021569576.2
length 3854
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110494476
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69288804 ~ 69296982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTAAACTTCAGAGCGCTGATCTTTAACTGTAGCAGACAGATGCTTCCCTGTTGTATTCATGTACTACACAGTTACATTTTATCGTGTGAATATAATTTGAAACTTCACACTGATTTGGAAACGTTGTCTGAAGACTCAGCACAATTGCTGGCATGCAGAATGCGAACCCAATAGAGGAGGTGGGAGGCGACACATCCTGTGATGTGCCCTGTCTCCAGAAACTTGACTCCCCAACAGGGAGCCCTCCCAAACAAGCCTCTCTTGCCGATATGATTGAGTTTGAGAATTGTGTTTCCAATCTCAGCCTTGCACATGAGATAGTGATGAACAGAGACTTCAGCTTCACACAGAACAGCCCACCCAAAGACAGCTTGCAAGGCAGAATATCTGACATAGTTCACAGTGCTTTCTGGGACTGTCTTCGTGAGCAGCTTTCATGCAGCCCTCCAGACTATGTCCATGCTGTCATTCTGCTCCAAGAGGTGAAAACTACCGTGCTGTCCCTGCTCCTGCCTGGCCACGTGCGTCTGAAGGCCCAGGTGGAGGAGGTTCTGGACCTGGAGCTGATCCAGCAGCAGGCAGATCACGGGGCCCTGGACCTGCAAAGATTGTCAGGCTACATCATCAATACCATGGCCTCCCTGTGTGCCCCTGTACGGGACCCAGAGATCAAGACACTACGGGATCTTTCGGACCCAGTGGAGCTCTTCAGGGAGATCTTCAGAGTCCTTGGCCTGATGAAGACAGACATGGTCAACTTCACTGTACAGAGCCTCAGACCTAATCTTCTTCAGCAGGCGGTCCAATACGAGCAGGCCAAGTTCCAGGAGATCCTGGAGAAGCAGCCTGAGTTCCTGGACAAGACCACCGTTTGGCTTCAGGTGGCAGCACGAGAGGAGGCATTGGTCAGTGCTCAGTCTGACCTTGACACTGGGACTCCCAAGCCACGTGGTCCATTAAGTCCGACTGCCGTCCTGAACAGGGCTTACCTGCAACTGCTGAGCTGGGACCCCCATGACCAGAACTACCCTGAGaCAGTTCTGATGGACAGAGCCCGCATAGATGCACTGGGGCAGAGGCTGAGTCTGCTGGTTCTTGAGGCATCAGTTCTGCTGTTGACTAGCACACAGTGTGGGGCCGCTGTTTTCTCTCTACAGGGGTTTGTAGGTAAACTCAAGCAGACCATCACTGCCCTGCTGGAGGGCAGTCACAATAGGGACTTTGACCTGCAGGGGGCGTTGCTGGGGCTGAGGGAGCAGGTGCTGGTGCAGGTGAAGGAGGCTCTGATCACCCAGGAAGGACCAGCACTGCCTCAGGACAGTGAAGATTTGCTTAAGGGACAGATCTCAGACCTGGCCAAGGACAACAACCCCATCCACACTCTCATAGGAGAAAGAGTGCAAGGCTACCTCCAGGCCATGCTAGAGGGAGGCCCCACTAAAAAGAGTCCGTCCATGCCCCCTGCCCTGAGGCTGCTGAGTGCTGAGGTGGCAGAACTGGGAATGGCCTTTGGGCGAATAGTCCATTTCAACCGCTCAGTTTTCGGCCCCTTCTACGTCCCCATCCTAAGGAAGAAGCTGTTTCTGTCGGGAGAGGCCGAGATGGGAGAGGACTCCCGCTAGTCCCCCGAACACCTCCGGTCCCCTGCATAAGCTGCCATTCAACATTTACACAATGTAGAGCAGGGTTCCCAAACTGGTGACCCGCGGGCCAAATCTGGCACGCCAACAATATTATTTGGCTCACCCAAAGACCCCCAAATTCAatttaaatatgtatatatatatataaaaattaaaaaaatgtatacaaatctCAAAACCCCCCAAATGCAATGTCCCAAGAAGGAAGTTACCCTACCTAAGTAATGCAAAAGTTAAGTTAACTTCATTCATGAGGAGAGAGAATGCAGGAGACAGTCAACTAATAAAGCTGGCAACGGACCATTTTGTGGTGCTGAAACCTAAAGCTGCAACCACAGCAAAATCAATAGGAGGTGAACAGCAGCTGGTGCTGAAAATATAGATAACCTGTTATACAAGTGTTGCACAGCGACAGATGGAGAAAACCTACACCAGTCGAGTAATTCATTTCAACAATAATCTTCGttttaatttgactttacaaACAAGAAGAGGGCTTAATTGTCTTCTGAGCCTAGGCCTACATAAAATAACAGCTGGCTGTGGTATGCCATAAGGCTTAACAGTATctttcacaagaaaaaatatatGGCCTAATAGAAgtgggattaaaaaaaaaaaaaattacaaggTCTCCTTACAATTGCAACTGGCCAAAAATGGAGCATCCTAGATTAAACAATAATTTAAAGGAAAAAAGGTGAATGTCTATCAGGACAGCCTGCTCCTATAACGACAGAACAAACAGATAATACTGTCAGCTTGAGACCTAAATATCCCTGGATAAGCACACAATAATGTTAGTATTTACTAAGTACAGTCATATAGGCCACTAAGTTACTCACTCAATGGGAAATGTTGCATTTCCCCTCGATCTTATGGATGTCACGTGAGATGGATGTGATTTTGATGCGCAGGCAGTCAACAATTGTCTTGTGTGAAAGCCGGTTCCTGTCCTGAGTCTATATTGCGTTCATAGAGGAAAATGAGGACTCGCAGGATTAAGTCGATCCAAACATTGTTAGCACATGAAATGCACGTTTCTTTATTCGCTGTATTCCTGAGCATGCCACCCAAAACGCACACAAGGACTCGGTACCCCTGAGCGCATCCCTGATTTGGCTTGATGTCTGTAATTCAATCAGCTCAGTTTGAATTGCGGCCTAATTTTTAaaattttaactttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctacccataccaaacccggacgacgctgggccaattgtgcgccaccctatggggcttctaatcacggccggatgtgattcagcctggattcgaaccagggactgtagacgcctcttgcaccgagatgcagtgccttagactgcagctccactcgggagcccaatccAGCGAGGGTATCGTTTTCTTAGCAAGGGAGGAGTGTTCTCCACCTGGGCAGACTGTGAGAGGAGCACGTACAAACGCAATGATATCCATGGGCATTCTGTAGTCTTCAAATCTGGTGGAGGAGTTGTCAGCCAAAGAAGCAGTTTATGTAGCTTGCAGTTAACGCTTAAATGTTTCTGCGTAGGGCCTCTGTCTCAGGCGGGAAGACCACCTTGAAAGTTCCATGCTTAGATTCATAATAACGTATGAGATTAAATGATTTGCAAACAgcaacattttaatttaaaataaGACACACTGGCTTGGCATTGGGAAAATATGGTAAGATGAATGCAATCTCTTtgtacattttccctgatacTTATTGAGAGCGACATTTTCTCTTGCTATCAAGCCAATTGTTCAGAACGAATGTTGATGTTAAAAAGTATTAGTTAGTGTAGGCTACAGTAAACCTGTTTTTCCCCACCAATCAACACACAGTGAAATAGACAAAAATAATAACTGAATAGAGACATGGTGATTTTGTGAACGTAATCAGATCAAAATTATTGTTATTGTCACAGAATGTATTATGTAGTGATCAGATGTGTTAAAAATGTTGTTCAATTTGTAGTGTAGGCCAATTAATTGTGCTATTATTATATACTAATTTGGTTCTGGCCCGCTGACTATTAGCTCAGAGACAAATTGGGCCAAGGGCCAAACTTAGTTGACGAACCCTGATGTAGAGtgtttatactgtatatttagattttagaatatacactgctcaaaaaaataaagggaacacttaaacaacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693427 lncRNA upstream 121439 69164995 ~ 69167365 (+) True G1480768
TU1693390 lncRNA upstream 156651 69131947 ~ 69132153 (+) True G1480732
TU1692854 lncRNA upstream 288007 68954449 ~ 69000797 (+) True G1480255
TU1692857 lncRNA upstream 305069 68937277 ~ 68983735 (+) True G1480258
TU1692852 lncRNA upstream 306487 68934326 ~ 68982317 (+) False G1480254
TU1693514 lncRNA downstream 12715 69309697 ~ 69309963 (+) True G1480846
TU1693519 lncRNA downstream 18236 69315218 ~ 69315569 (+) True G1480851
TU1693520 lncRNA downstream 19315 69316297 ~ 69316738 (+) True G1480852
TU1693521 lncRNA downstream 21054 69318036 ~ 69318261 (+) True G1480853
TU1693523 lncRNA downstream 25808 69322790 ~ 69323026 (+) True G1480855
XM_036950533.1 mRNA upstream 5801 69239094 ~ 69283003 (+) False LOC110494475
XM_036950539.1 mRNA upstream 5801 69239094 ~ 69283003 (+) False LOC110494475
XM_021569572.2 mRNA upstream 6866 69237706 ~ 69281938 (+) False LOC110494475
XM_021569573.2 mRNA upstream 6866 69237706 ~ 69281938 (+) False LOC110494475
XM_021569574.2 mRNA upstream 6866 69237706 ~ 69281938 (+) False LOC110494475
XM_021569584.2 mRNA downstream 51903 69348885 ~ 69354495 (+) True LOC110494479
XR_005037269.1 mRNA downstream 54461 69351443 ~ 69351518 (+) True LOC118940683
XR_005037268.1 mRNA downstream 56838 69353820 ~ 69353895 (+) True LOC118940682
XM_021569588.2 mRNA downstream 63297 69360279 ~ 69362518 (+) True LOC110494481
XM_021569590.2 mRNA downstream 74705 69371687 ~ 69429659 (+) False LOC110494482
TU1692848 other upstream 289621 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 305326 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1163024 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1625155 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2420924 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1353961 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1542638 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1881531 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2084962 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 3007741 72304723 ~ 72305412 (+) True G1484782

Expression Profile