RNA id: XM_021569584.2


Basic Information

Item Value
RNA id XM_021569584.2
length 2172
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC110494479
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69348885 ~ 69354495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTGCTGGGCACAGCTGCAGATGAGCAAAGATGACCAAACCGGAAGCGGAAACGTAAAGGCTAGCTGGTGGTTCCACGTGCAGCAGAATTTTAGTCACAGTGCCAGAACCACAGTCCTGCAATGAAGCGCCCAGGGTTAAAGAAAGCAAGTAAACGTGTGTCTTGCTCCAAACGTTACAAAATACAGAAAAAGGTCCGGGAACACAACAGAAAACTAAAAAAAGATGCAAAAAAGAAAGGAGTAGGCAAAAAAATGAAAAAGGATATTGGAGTTCCCAACAAAGCACCCTTCAAAGAGGATATTCTGAGGGAAGCAGAACAGAGGAGGTTAAAGCTTGaagaagaaaaagagaaaaaaaagttgGCCAAGCAACAACAACGGGCTCAGAAGAGGAAGAAGGAAAACGCTGCCAGTAGTGATAGAGACACCAAAGTGAAGAAAGCCAGAAAGGAGTTACCGTCACAGGAGGACCTTGTCAAACAGATGGTGAAACAAAGTGACCCAAGGAATTCAAAGAAGCACTTTTGTTCAGAATTAAATAAGGTGATCGATGCCTCTGACGTTATAATTGAAGTCCTAGACGCCAGAGATCCCCTTGGCTGCAGGTGTCCACAGCTAGAGGAAGCTGTACTGAAGAGGGGTGGAAACAAGAAGCTACTATTCCTGTTGAACAAAATAGATCTTGTTCCTAAAGAGAATGTGGAGAAGTGGCTGCAGTGTCTTCAGCTTGAGTTCCCAGCTGTGGCGTTCAAGGCGTCCACACAACTACAGGATAAAACGGTGCAAGAGAAGAAGGCTAGGTTTGCAACTCTTAATGGAGTAGTAGACCAGACCAAAGGAGTGGCGTGTTATGGCGGCGGCTGTCTTCTCCAGCTCCTGGGAGACTTTGCAaatgggacagggagagggggctCAGTAAAAGTGGGCTTAGTCGGGTTCCCCAACGTGGGGAAGAGCAGTCTGATCAACAGCCTAAAAGGGATGAGGGCCTGTAATGCAGGAGTCCAGAGAGGGATCACCAGGTGCTTCCAAGATGTCCACATCTCTAAAAATGTCAAGATGGTTGACAGCCCAGGGATAGTGGCGGCCCAGTCTAACCCAAAAGCTGCCATGGCGCTGAGGAGTCTCCAGGTGGAGGACAAGCAGGAGACTGTTCTAGAGGCCGTCAGGACCCTGCTCAAACAGTGCAACAAGCAACAGGTAATGCTTCAGTACAATGTTCCGGACTTCAGAAACTCGTTGGAGTTTTTATCCTTTTTTGCCAAGAAACGTGGATTTCTGCAGAAGGGTGGATTCCCTAACACAGAGCTGGCTGCCTCTACCTTCCTCAGTGATTGGACAGGGGCAAAGCTGAGTTATCACTGCAAAGCCCCTGAAAAGCCAAGCCTTCCCCCATACCTCTCTGAAGACATTGTAACAGAGATGCAGAAGGGCTGGGACTTGGACAAGCTGAGGAAGAGCAACGAGGAGACTCTAAGAAGTGTGAAGTTCCCAAACCAGGCCAGCAGCATCATCCTCCTGTCTAAAGGTCCCACTGCAGGAGTGCTGAGTGACAGTGATGTGGTTGAGGACAAACCTGCTCAAGGGCCCACtgaggaagaggagatggagggtagCTGTGCGAACCAAGAGGATGATGGGGTTGAAGCGGTGTCTGATGCAGATGAAATGGATGAACCACAGATAAAGACACCAGTCACAAAAGAACCAGCCAAAGTGAGGTTCCAGGTTCCTGTCCCAGTCAACATTCTCTCCTCAGTCCAGACAGATGATGCCTATGACTTCAACACCGATTTTAAATGAACATCTATGACCTTCTGGCTACGTttgacaggcagcccaattctgatttgtTTTTTCACTATTTGGTCTTTAacccaatcagatcagctctgagaAAAATTTGGTGTGATCGGTCAAAATAATGTGTAAACGCATCCTTTGTTTCTCAACTCTCTCATATCTTAACCTTACTAGCTGTACTGGCACCATCTGAAGTTACTGTTTGAagtcctgtgtgtgtggatgtaacCTGCAAAATGAGTTGGTAACAATGTTTTGCCTTGTAAGTAAAGGTCCAGTGGTAAATTGTTTAAGATCTGTCAATGTTCATTGTGAATTATTGTATATAGCCTGAACACAAATAAATTGATCCATATTTTGGCTCAA

Function

GO: NA

KEGG:

id description
K14538 NUG1, GNL3; nuclear GTP-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693540 lncRNA upstream 7587 69341087 ~ 69341298 (+) True G1480872
TU1693538 lncRNA upstream 9819 69338758 ~ 69339066 (+) True G1480870
TU1693532 lncRNA upstream 15265 69332905 ~ 69333620 (+) True G1480864
TU1693528 lncRNA upstream 20839 69327838 ~ 69328046 (+) True G1480860
TU1693527 lncRNA upstream 21106 69327445 ~ 69327779 (+) True G1480859
TU1693551 lncRNA downstream 9290 69363785 ~ 69363993 (+) True G1480883
TU1693553 lncRNA downstream 9635 69364130 ~ 69364586 (+) False G1480884
TU1693554 lncRNA downstream 10473 69364968 ~ 69365292 (+) False G1480884
TU1693555 lncRNA downstream 10473 69364968 ~ 69365532 (+) True G1480884
TU1693559 lncRNA downstream 11077 69365572 ~ 69366420 (+) False G1480885
XM_021569576.2 mRNA upstream 51903 69288804 ~ 69296982 (+) True LOC110494476
XM_036950533.1 mRNA upstream 65882 69239094 ~ 69283003 (+) False LOC110494475
XM_036950539.1 mRNA upstream 65882 69239094 ~ 69283003 (+) False LOC110494475
XM_036950534.1 mRNA upstream 66947 69239070 ~ 69281938 (+) False LOC110494475
XM_021569588.2 mRNA downstream 5784 69360279 ~ 69362518 (+) True LOC110494481
XM_021569590.2 mRNA downstream 17192 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA downstream 19347 69373842 ~ 69429659 (+) True LOC110494482
XM_036950546.1 mRNA downstream 745876 70100371 ~ 70405132 (+) False LOC110494487
XM_036950543.1 mRNA downstream 745887 70100382 ~ 70414992 (+) False LOC110494487
TU1692848 other upstream 349702 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 365407 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1223105 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1685236 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2481005 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1296448 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1485125 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1824018 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2027449 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2950228 72304723 ~ 72305412 (+) True G1484782

Expression Profile