RNA id: XR_005037269.1


Basic Information

Item Value
RNA id XR_005037269.1
length 76
RNA type mRNA
GC content 0.36
exon number 1
gene id LOC118940683
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69351443 ~ 69351518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATGAAGCATGATGACGTTGAAGATCTGACAAAACAATGAAGTCTATATTCAATCCAACACTGAGCTTCATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693540 lncRNA upstream 10145 69341087 ~ 69341298 (+) True G1480872
TU1693538 lncRNA upstream 12377 69338758 ~ 69339066 (+) True G1480870
TU1693532 lncRNA upstream 17823 69332905 ~ 69333620 (+) True G1480864
TU1693528 lncRNA upstream 23397 69327838 ~ 69328046 (+) True G1480860
TU1693527 lncRNA upstream 23664 69327445 ~ 69327779 (+) True G1480859
TU1693551 lncRNA downstream 12267 69363785 ~ 69363993 (+) True G1480883
TU1693553 lncRNA downstream 12612 69364130 ~ 69364586 (+) False G1480884
TU1693554 lncRNA downstream 13450 69364968 ~ 69365292 (+) False G1480884
TU1693555 lncRNA downstream 13450 69364968 ~ 69365532 (+) True G1480884
TU1693559 lncRNA downstream 14054 69365572 ~ 69366420 (+) False G1480885
XM_021569576.2 mRNA upstream 54461 69288804 ~ 69296982 (+) True LOC110494476
XM_036950533.1 mRNA upstream 68440 69239094 ~ 69283003 (+) False LOC110494475
XM_036950539.1 mRNA upstream 68440 69239094 ~ 69283003 (+) False LOC110494475
XM_036950536.1 mRNA upstream 69505 69239072 ~ 69281938 (+) False LOC110494475
XR_005037268.1 mRNA downstream 2302 69353820 ~ 69353895 (+) True LOC118940682
XM_021569588.2 mRNA downstream 8761 69360279 ~ 69362518 (+) True LOC110494481
XM_021569590.2 mRNA downstream 20169 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA downstream 22324 69373842 ~ 69429659 (+) True LOC110494482
XM_036950546.1 mRNA downstream 748853 70100371 ~ 70405132 (+) False LOC110494487
TU1692848 other upstream 352260 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 367965 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1225663 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1687794 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2483563 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1299425 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1488102 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1826995 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 2030426 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2953205 72304723 ~ 72305412 (+) True G1484782

Expression Profile