Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021569588.2 |
| length | 535 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 4 |
| gene id | LOC110494481 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 69360279 ~ 69362518 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006465 | signal peptide processing | biological_process |
| GO:0005787 | signal peptidase complex | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| K12946 | SPCS1; signal peptidase complex subunit 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1693540 | lncRNA | upstream | 18981 | 69341087 ~ 69341298 (+) | True | G1480872 |
| TU1693538 | lncRNA | upstream | 21213 | 69338758 ~ 69339066 (+) | True | G1480870 |
| TU1693532 | lncRNA | upstream | 26659 | 69332905 ~ 69333620 (+) | True | G1480864 |
| TU1693528 | lncRNA | upstream | 32233 | 69327838 ~ 69328046 (+) | True | G1480860 |
| TU1693527 | lncRNA | upstream | 32500 | 69327445 ~ 69327779 (+) | True | G1480859 |
| TU1693551 | lncRNA | downstream | 1267 | 69363785 ~ 69363993 (+) | True | G1480883 |
| TU1693553 | lncRNA | downstream | 1612 | 69364130 ~ 69364586 (+) | False | G1480884 |
| TU1693554 | lncRNA | downstream | 2450 | 69364968 ~ 69365292 (+) | False | G1480884 |
| TU1693555 | lncRNA | downstream | 2450 | 69364968 ~ 69365532 (+) | True | G1480884 |
| TU1693559 | lncRNA | downstream | 3054 | 69365572 ~ 69366420 (+) | False | G1480885 |
| XM_021569584.2 | mRNA | upstream | 5784 | 69348885 ~ 69354495 (+) | True | LOC110494479 |
| XR_005037268.1 | mRNA | upstream | 6384 | 69353820 ~ 69353895 (+) | True | LOC118940682 |
| XR_005037269.1 | mRNA | upstream | 8761 | 69351443 ~ 69351518 (+) | True | LOC118940683 |
| XM_021569576.2 | mRNA | upstream | 63297 | 69288804 ~ 69296982 (+) | True | LOC110494476 |
| XM_036950533.1 | mRNA | upstream | 77276 | 69239094 ~ 69283003 (+) | False | LOC110494475 |
| XM_021569590.2 | mRNA | downstream | 9169 | 69371687 ~ 69429659 (+) | False | LOC110494482 |
| XM_036950541.1 | mRNA | downstream | 11324 | 69373842 ~ 69429659 (+) | True | LOC110494482 |
| XM_036950546.1 | mRNA | downstream | 737853 | 70100371 ~ 70405132 (+) | False | LOC110494487 |
| XM_036950543.1 | mRNA | downstream | 737864 | 70100382 ~ 70414992 (+) | False | LOC110494487 |
| XM_036950544.1 | mRNA | downstream | 737864 | 70100382 ~ 70414992 (+) | False | LOC110494487 |
| TU1692848 | other | upstream | 361096 | 68994632 ~ 68999183 (+) | True | G1480254 |
| TU1692851 | other | upstream | 376801 | 68934326 ~ 68983478 (+) | False | G1480254 |
| TU1692079 | other | upstream | 1234499 | 68122538 ~ 68125780 (+) | True | G1479621 |
| TU1690884 | other | upstream | 1696630 | 67661987 ~ 67663649 (+) | True | G1478504 |
| TU1690094 | other | upstream | 2492399 | 66867525 ~ 66867880 (+) | True | LOC110494429 |
| TU1695519 | other | downstream | 1288425 | 70650943 ~ 70656057 (+) | True | nampt2 |
| TU1695603 | other | downstream | 1477102 | 70839620 ~ 70841230 (+) | True | LOC110494494 |
| TU1696175 | other | downstream | 1815995 | 71178513 ~ 71180429 (+) | True | G1483346 |
| TU1696516 | other | downstream | 2019426 | 71381944 ~ 71382272 (+) | True | G1483638 |
| TU1697747 | other | downstream | 2942205 | 72304723 ~ 72305412 (+) | True | G1484782 |
