RNA id: XM_021569590.2


Basic Information

Item Value
RNA id XM_021569590.2
length 2746
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110494482
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 69371687 ~ 69429659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGTGTTGGCCACTCCCTCCGCTCTTTGCCTGACGTCAGGAGAGTGCTGATGGGGGGGTGTCGAATCCAGTTTTTCGGCGAACGCCGCGAGTCTAATTTGGAGAAGCAGTGAAGAAAGAATCGACCTTTGAGATCGTGCAATTTACAGtaTTGTAGCCGACCGACAGAAAAGAAAGATGCCTTTGGGTGACGATGGACATTCCTGGAAGAAGAAAACATCAGATGTGAAAGAAAACTACGACTTCAAGGAGATCCTGGGGACGGGGGCTTTCTCCGAGGTGGTCCTAGCAGAAGAGAAAAGGACCCAGAAACTGGTGGCCATCAAATGCATCCCTAAGAAAGCCCTGGAGGGCAAAGAAAACAGCATTGAGAACGAGATTGCTGTCCTACACAAgttAAAACATGCCAACATTGTTTCCCTGGAGGACATATTTGAGAGTAAAACCCACCTCTACTTGATTATGCAGCTGGTGTCTGGTGGGGAGCTGTTTGATAGGATTGTGGAGAAGGGATTTTACACAGAGAAAGATGCCAGCAAGCTCATTCAGCAGATCCTGGATGCTGTCAAATACCTCCATGACATGGGCATCGTACACCGCGACCTGAAGCCGGAGAACCTTCTGTACGACAGTATGGAGGAGGACTCTAAGATCATGATCAGTGACTTTGGCCTGTCCAAGATCGAGGGATCTGGAAGTGTCATGTCCACAGCCTGCGGAACACCAGGATACGTGGCCCCTGAAGTGTTGGCCCAGAAACCCTACAGCAAGGCGGTGGACTGCTGGTCTATCGGGGTCATCGCCTACATCCTTTTGTGTGGATACCCTCCGTTCTATGATGAGAATGACGCCAAGCTCTTTGAGCAGATCCTGAAGGCTGACTATGAGTTTGACTCTCCGTACTGGGACGATATCTCTGACTCAGCCAAAGACTTCATAGTTCACTTGATGGAGAAGGACCCCAGGATACGCTACACATGTGACCAGGCTTTGCAGCACCCCTGGATCGCTGGTGACACAGCTCTAGATAAGAACATCCATGAGTCTGTCAGTGCCCAGATCAAGAAGAACTTTGCCAAGAGCAAGTGGAGGCAAGCGTTTAACGCCACGGCAGTGGTGCGTCACATGAGGCGTCTGCAGCTGGGCACCAGTCAGGAGGGCCCCAGCCAGACCACCCTGCCCAGCACCCTCCGAGACCACCTACTGCTGCCCGAGGCCACAGAGACAGAGCACACCACCGAGTCTCCTTGCGAGGGATGCTGCTCCCAGAGTGCTGATGGGGGGGCTGAGCGCGACCCCCTCTCCAACTGCACCTACCGCTGCCATCCAACCAGTCTGGTCTGATCCCCGCCCAGCAATGGCTTTCCCATGTATTTACCTCTGGACACCAGCGAACTCCCCAGGAGTACAGAGTTGTTCCAGTGCCCTGCCAACAGGGGGGGCAGGCGGGTTATGAATTCAGGTTGGGGAGGAGGGACTTGATGCCAACAAGAGGAGGTAATTTGAACGGATTGGGGGAGATGAGGAgaacaaagaggaggagaggtgtggtgCCCAGAGTAATCCTGGGTATTATTTTTTGAGGTGCGGGACAAACTGTTTACTCGTCCTTTTAAAATGTGTGTCTGCTTTTTACATTTCTGCATTTATGTACATGTTGTTTTCTATCTTAATTATCCTTCCCCTTTGACAACTTCTAGAAAGAGAATCCACTAATGATATCTGCATGGTCAGAAGACAGATCCCTATTGGAAACATGGGTATTATAGCATGAAAGGTCTATTGCACAATCATGTATGGTGGTAACCATTGTGTTATAGTTCCTGTACTGCAGATACACATCTTTATGACGATAATAAGTCTAGCCCCCCAGAATTATAATTGTATGGCTTTgttgtattttatatttgtatAAATGTAGCCTTACAATACACAGATGCATTCACCTAATACCACTGCTGGAGAATCCATGTGGGAATACTCCATCTATTGGACtatatattttcttttttttctcagcATGTTTGTGCTTCACCACTGTAAGTTTGTGGTTGTGCTCCCCAGGCTTGTAACAGAACAAGGCTTTCTGATTTGAACTAATTCAGCACAGGGACTTCCTCTCTATGCCTTTAGGACAACGTCAAAGGTTTCTTTTCTCGTAGCTTTTACAAATTTGAAGATACACCTATATCTCTGTACAGTTAATGCAGCATTAGAGGCAATTTTCATTTCTATCATTGTATTGTTGTATATATTTCATTGTGGTAATGGAATCAGTAAAATACAGACTTTTCTCTTCTGTCTAGATCTCTTTCCCACTTGAGAAGTGTAATACCTCAAGGGAGATAGACTTACATACACAGCCATTCCTCTTAGTACTAAGAATAGGCCTCCGTTAACCCACAGTTTTTACTCCTTGATGTTTCTTAAAAGCCACACTCTTCCCTATGGGGGGAATATGATCCCGTTGATAAAGCTGCTCAAGACTTAATCCATTATAGATATTACTGTAAGACCATGTAGAATGAAATGAGGTCCAGCCTTTCCTCAACCCAAAGCAGGGTGTGGATGTTTTTAACTAAAGACACATTTGTAAGTGTAGATACTTATCTGACCATGTAGATACTACTAACGTTCCCACTTTGACTACTCTTCCATGGATCTTACCTCCATTCATATGTTGGTTGTTTTCCGAGCCAATGTATCTGTACAGAGAGAATTTTAATTAAAGAATGTAAATATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1693566 lncRNA upstream 1404 69369990 ~ 69370283 (+) True G1480890
TU1693565 lncRNA upstream 2048 69369385 ~ 69369639 (+) True G1480889
TU1693568 lncRNA upstream 2793 69368239 ~ 69368894 (+) True G1480892
TU1693560 lncRNA upstream 5042 69365572 ~ 69366645 (+) False G1480885
TU1693561 lncRNA upstream 5042 69365719 ~ 69366645 (+) False G1480885
TU1693567 lncRNA downstream 604 69430263 ~ 69431020 (+) True G1480891
TU1693564 lncRNA downstream 2218 69431877 ~ 69434164 (+) True G1480888
TU1693603 lncRNA downstream 7505 69437164 ~ 69437477 (+) True G1480927
TU1693604 lncRNA downstream 7866 69437525 ~ 69437797 (+) True G1480928
TU1693790 lncRNA downstream 17610 69447269 ~ 69447468 (+) True G1481101
XM_021569588.2 mRNA upstream 9169 69360279 ~ 69362518 (+) True LOC110494481
XM_021569584.2 mRNA upstream 17192 69348885 ~ 69354495 (+) True LOC110494479
XR_005037268.1 mRNA upstream 17792 69353820 ~ 69353895 (+) True LOC118940682
XR_005037269.1 mRNA upstream 20169 69351443 ~ 69351518 (+) True LOC118940683
XM_021569576.2 mRNA upstream 74705 69288804 ~ 69296982 (+) True LOC110494476
XM_036950546.1 mRNA downstream 670712 70100371 ~ 70405132 (+) False LOC110494487
XM_036950543.1 mRNA downstream 670723 70100382 ~ 70414992 (+) False LOC110494487
XM_036950544.1 mRNA downstream 670723 70100382 ~ 70414992 (+) False LOC110494487
XM_036950545.1 mRNA downstream 670723 70100382 ~ 70414992 (+) False LOC110494487
XM_036950547.1 mRNA downstream 991597 70421256 ~ 70429407 (+) False c17h3orf14
TU1692848 other upstream 372504 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 388209 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1245907 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 1708038 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 2503807 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 1221284 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 1409961 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 1748854 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 1952285 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 2875064 72304723 ~ 72305412 (+) True G1484782

Expression Profile