RNA id: TCONS_00046411


Basic Information

Item Value
RNA id TCONS_00046411
length 5808
RNA type mRNA
GC content 0.42
exon number 17
gene id XLOC_023462
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24101811 ~ 24163201 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCACCGTCGTGGAAAACCTGATAGATGGAGGGTCAAAAAAGGACAGAATTCGACAGGCCAAAGAAAGAAGAGAGGAGAAAGATAAGAGCCAAGccctGCGGGAGCGTGCGCTGTGGGAGAAGGAGCAGCGGGCGCAGCAGCAGTACGAGCGCTCGGTGGTGGAGCGAGGTAGGCGTCTGGAGGAGCAGCGACACAAGGAGATGCTCCGCCGCTCTGCCGTCGAGGAGAAGAGACGCCAACGCGTGGAAGACGAGAAGGAGCGACTGGAGGCCCTGATGCGACGTTCCACAAACCGCAACCTCCAGGCGGATCAGAGGCCCAAACGCTGGACGTGGTGCGGACCTCCGGGAGCCTGCGAGGGTGATTCTAAGATTGCCCCGCCTTGCCCTCCTGCTTCAGCCTCCTTAGCCAATGAACATGCTGCTCTCACTCCTGCCAGCAAATCCAAGAATGTCCAAGATTTTATGATTCTGCCCGACTCTCCAGACTCTCTCCTGAGCAGACACCTCTCCTCGTCCTCTGCTACTTTGCCCAATATGACAGAGAAAGCCTCCTCCAGCCCTCACAGGTCTCCTTACAGGGCTTCACCCAGCAGAGCAGAGAGGAAGAAGGTCAGTGCTTCATTCTGTGGACCACTGGACGACTCCAGAGGAGCGGCCACCACCCCGAAAACCCCTCAGACTGAGAAGCCGGAAAAAAGCATCGCCCAAACTTTAGCTGACTCGACGATGAAGAAACTGGAGTCTCCAACAACGCCCACTCGAAGCTCCTCCTCCACTCGCAAAAACCCCAGCACACCGAAAAGATCTAAGTCTTGTAAGAGTCGTATTCAGTCTCCAGCCTCTCCGGGTCAGTTTCCTTCATCCCCAATGAGACACAGAGCAACAACACCCAGTGCTGAGAACAGAATTCGGGACGGGGAAGAGAAAATTTCGGAGGGGAGTAAAGGATACAGCACTCTAGAGAGAAAGAGCTCCAGAACTGAGAGAATGCCCAAATCCACAAGCAAAGAGTTTGGACACAACGCAGAGTCTCCAGTGACTCCCACTGGGAAAGCAGGTACGACTGATGCTGAGGAGGCCTCCAGACTGCTGGCAGAGAGACGACGCCTGGCCCGAGTCCTGAAGGAGCAGGAAGAGAAACAGCGGCTGGAAGACGAGAGGCTGCGAGTTGAGGAGCTCCAGAGGCAGCAGGAGGAGGAGAGACAGCGCCAGGAGGAGGAGAATCGACTGGCGGAAGAGAAAAGACTGAGGCAGGAGGAGCAGCGTTGTCAGAGAGAGATGGAGGACAGACACCAGAAAGAGCAGCGCTGGAAAGAGCTCCAGGATGACCTGGAAAGACAGAGAGAGGAAGCAGTGCAGCGCGTTCACAGAGAGGCCGAACGCAAGAGACAAGAGCGAGAGCTGCTCAAAATTCAGGAGGAACAGGAGAGACTGCAGAGAAAGAAGCGTATCGAGGAGATTATGAAAAGGACACGTAAACCAGATGGAGAAAAGAAAGAAGAGGCGCAGATGGAAGTCCCATCCCCCATTTCTGTCTCTCAGTCCATCTCACCGTCTCCCTTGGAAACTGAGGGGATCAGAGTGATTAACAGTCCACCAAAAACAGCATCTGAATCTCCAGTCATATGCCTTGAGCCTCTGGAGGCAAAAAGCAGTTTGGCGGATGATCTATCTGATGGGGTTCAGTCTATGGACGTCAGCCCAGTGTCCAGAGATGAGCTTGTTCCAGAGTTTTCCCCCATCAGCGAAATCTCACAGAACAGCATGAGTTCTGCTTTGGGCGATATCCTCGTTCTGACCAGGCAGGTCTCACATCCCAAAGTGTCCGCTGCTCCAGCGTTTGGTGACTGCAACAAGAATCTGATCCAGGATTGCAGTAGCGCCGCTATTGACTCATCACTTTTCCAGAGTCTTAGACCAGCCTCAGACAAGCTCAACATATAATGTAAAGACACCACTGAAGCATGGGGCTGGACTAAACTGATGCTGTCTGTGCTCCAGCATCTCCATGAGAGCCTCCTCCTCTGAACCAGAGAACAAGGACTGAATGTCAAACCATGTGTTAATAGCAAACGAGGGACACCCTGAAGGCTGAATCCCCACTCAAAATAAACGTTTTGCCTGCTCCTCTAGATATTATATTTCACACCGTTTCACCATAGTCTCACCAGACAACGCAACTGTATTAGCGCCGTCCTAGTGGTCTTATTCCTGTTATACACCTGTAGCATTGATGAGTAACACACGTGACAATTGTAGCAGCTccattgtgtaatttgttttattttgggttgCAAAAACGACCAGCAAATCCGAGCTGAGTCCTGCTAATTGTGCTGTAGTGTATGGCCGGGGTTTGCAAACAGTATATCGTGTAAATCCAATGACTTCTCTGCGTCTTCTCAGCAATCCAAGCTTTGTAGTCTGAAAGTGGATATATGAATAGATGTAAAGTGTGATATTATTCCACCATAAACACTGGCATTAATGTAATATTAGTCAACGGTGGTTAGAAGTTATAGCAGAGGGGGTGGGGGTGGGCCGTTAACAGAATAAAGTGTACTTCTAATGTAATTTATTgtgtaaaagtttaaaaaaggaaTTAAAAGTGCACAAGTCCGTTGTGTTTAATAGCATAGTGCTTTTAACTCTTCATAGACTTCTGTATTGTTTTGTCGAAATGACATCATTGCACACAGCTCTATGCAGAACGATACACGGCAACACAAATCAAGGTAATTCAGCATTTGGTGACAAGAGAAGGAGTTGTACTTGCTGAGTATGTTGCCTATAAATACTCTGTTTACCATCTTGTACACTCAGGGTAAAAGTGAGCTTTGCATGTGAGCTCATTTGTGATGTTTGGTCATGTATGATGCTGTTGTGCACTGGACTGCTTCAGGACCAATAAGAAACAGATTTATTGAAGGATGTAAGTTTGTATCtgtcttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatatttctgtCTATCTATATTTCTGTCTATCTATATTTCTGTCTATTTAGAAACGTGGGAAgttgattacatttttgattttaCAGGAAGTGATGGGAAATTCAGCACTTCAAAATGACATTTGAGAAAAGGTGCATGAATCAGCTGCTTTGAAGTTGCCGAATACTGACATAACAATAAAGTATGTATCACACTATGAGATATCTTTATTCACAATACATATAGCTTTAGTGTATTTACTTATTGACCTTAATTTTCACATATGTGCAGCCTTTTATTGGCTCGAATATTGGCTAAAAGTTGAAGATTTTTAGCTGTATGCTAACAGCTCACTATGCTACTTTTATATAGTCATAAACACATTTGTTTGCTGAGCAAGTAGCTTGACTGTTCACTTATTTAGTTTGttattgctggtaattttccctAAAGGTGAATAAATTGGAAGTCCTAAAACAATCAGCGAAAAGAGCTTGCTTCCGTGTTGCTAAAAAAGGTGAATAGAAGTTGGaaaaatcggtaacactttacaataacagtacttaaataatgatgtgttcatttgtaaactaatttttactttatttcatcatttgttcatattttaattatgaacaaatgatgagttaatgcatgcgctaatcatgaactgACTTACAACATAAGTCACATGTATGAATAACAGCTACCtcaattacttgttagtacatgattgtttgttaattaatgtattaattaccacattagtttatgcttactttaaccatcatgaactcatatgttaatatattatgtcatgactttacttggaggggcacatcaccatttTAAACTACTCATGCACTTATGCATGTCCAActagtgcatttacactgaatgaaaatagaaaagtgttctgtcaacatcaacacgAACAGTTTTAagacaggagttcatgagtagttaaggatgattTAATGATGTTGTGCTCCTCCAAGTAAAGTGACGAAATAATTATACAtcaacagctcatgagttcatgttggttacatttagcttaaacgcAAAtgttaattaaactaattaacaacatgtactaacaagtaactATGGCACtaatgtgactcatgttgtagttaaagttagtttatgATTAGCGTGCGCCTTAACTCTTCAATAATtcacaataaaataatgtttcattattcatgtactgttaaagtgttacccaaaagtCCATTAAAACATTCATGAAACACGTTTACTTCTAGCAGGGTATGCTAACACAACGGAGAGCATAATGAGGGGGATAAAACAGCATCATATAGCCTCAACAAGTTTAAACCAAGCATATAGGGAACAAAGGTGGATAAGTGACTTtgaatttcagaaactgttgatctgaTGGGATTTTAATCTCAACCATCTTTAGAGCATGGTAGAATAATATTAGAGAAAAAATTACATGCTGGTTTGAGCTAAAAGAGAGACTACAGTaactcttttaaatgtaaacGCACCAACATATACACAGAAAACAAAATCTATGATTGTACAAAAATGTGCCTGGTCTGgggatgagtctcaatttctgctgctaCATTTAATGGTATGGCCTAAAATTGAGctaaaacaacatgaaagcatggtttCAAAGTGCCTTGAATTAACTACAGTCTGTTACTGGTGGTGtggaatattttcttggctcaCTGTACTAAACTATTTGAGATGTAAGAGCTGGGGCCTGTACCATCAAGCTGGATAGCCagttaagtttcagtttagtttgcagcGATCTTGGGTGTAGGTATCATGAAAGCAGCGTGTCTTTAATCAGTTTTTTGTTGCCATGGTGTTATGGAGCAGCTGAGTCGCCTGCATGGTACCTAAAACCCAGAACAAAACAGAAACTAAACTGACTAGCCAGCTTATCTAGCTTCATGATACAGCCCTCTGATCTGATTTAGAGGACAATACTTTTGAAAATAAAGTTCTTTATTGTTATCGATGGTTCCGTGAGGAATATTTACCACTTGTAcatcaaattttttaaaaaatgttacccATAAGGGCATATAAGAAAAAATGTCTGTGTTCGAAAACCAACATTTGGTTGGTCACAATTCACGGTATTAACAAAGCATTAAGTAACACCACTAGCTTAACAAACTACTAAAATTATCTGTTATAAGGTGGAGGTTGGGTTTGGGAAGGATTTGGGAtgcaaaataagatcatactttttaACTAGTAAGGAACAATCATGTCTTAGATAATAAGCTAGTTAATACcttgaattgtgacctaaactatagttttaaactaaaattaaagttgttttttttttgtcatcagatctaataacttaaaaaaaaatacttttaaggATTTTAaccatttcaattattttatttaaaaactacatAAACTAAAGACTAAGCTGTCTTtccttataataataaaaatatacatatatttaaagatgtttttaatgGATTGCTTCTTTAGGGGCCAGTGGCTCGCGCAGGCGCTCTCGAGTGCTGCTGGTGAAAACGAGGCTTTCACTCATTCACTTCCGGCTCAATCTTGTGTATGCATCGCTAGGGCAAGTTGGTCGTGTGGTTATATTCATCTGTCAACAATCCATCCATATTTGATCCGTCGTattgactatggcaatatctcaatctgttatttaattaaatgttccaTAGTCCGTTGTTTTCTATCGCGAGAAACTGGTATTTTGGTGGACGCATCGTCTAGCAGTTTGTGGAAGCCATCGCGCGGG

Function

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-82 Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D2 (MAP7 domain containing 2).

Ensembl:

ensembl_id ENSDART00000080602

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046410 lncRNA downstream 3309 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00047193 lncRNA downstream 19314 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00047192 lncRNA downstream 19319 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00046860 lncRNA downstream 360896 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 365618 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046418 lncRNA upstream 4040 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 253394 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047194 lncRNA upstream 253394 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046424 lncRNA upstream 253394 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046861 lncRNA upstream 256365 24419295 ~ 24451803 (-) False XLOC_023466
TCONS_00046408 mRNA downstream 3976 24101814 ~ 24114217 (-) False XLOC_023462
TCONS_00046406 mRNA downstream 6519 24101811 ~ 24111674 (-) False XLOC_023462
TCONS_00046404 mRNA downstream 57561 24036195 ~ 24060632 (-) False XLOC_023460
TCONS_00046405 mRNA downstream 57733 24052745 ~ 24060460 (-) True XLOC_023460
TCONS_00046403 mRNA downstream 79393 24035863 ~ 24038800 (-) False XLOC_023460
TCONS_00046416 mRNA upstream 1297 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046417 mRNA upstream 2058 24164988 ~ 24168475 (-) False XLOC_023463
TCONS_00046419 mRNA upstream 20822 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046420 mRNA upstream 110441 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046421 mRNA upstream 110519 24273449 ~ 24281806 (-) False XLOC_023465
TCONS_00046400 other downstream 140908 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 844834 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1746093 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1809135 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 2020430 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046441 other upstream 845387 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2196309 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 2198816 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 2312252 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 2345958 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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