RNA id: XM_036950544.1


Basic Information

Item Value
RNA id XM_036950544.1
length 7288
RNA type mRNA
GC content 0.47
exon number 29
gene id LOC110494487
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70100371 ~ 70415005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTTTTAAAGTCTCTGCCAGACTTCGATTCACACGCtacttcctggatggaggaatggaAAGCTTCCAGTGCCGCTCCAACTATTCCCTCTCTGTTTTCGCCAGCAGAACCGCTGCAGCTCTCGGATGCATGGACTAGCCTACTGCCACTAGCGTCTTCTGCGCCTATCCCCTCGATTCTTGTTGAATGAACTGATTCAAGCTCGAAAGCTATATCTCTCCTAACTGACATGTTTTTCTTTGGGAGTATCAAGAAGCTGTTTGGAAGGAGGTTTTGAGAAGTAAAGACTGTTTTCTGGATGTTCCAGACAGCACTGAATATAATTCCACTGAACAGTCACTAGCCTACATTTAGCAGAATTTGCGCTGTTTTTACGCAGCGGACATTCATTATTTGATCAGACGGATAACTCAACAGTTGCCCTTTTTGCTCTCGATGTTCATTTTGTCATGCGGAGGCTACTGCAATCGTGTTGCTGGTGGATCTTGTCTCTGATCTTGTCTGCCTTCGTTCTCTTTTGGGCCGACTGCCATCCTGCGCTGACAGGAGGGCAGCCCGGCTCCACGCAAGGGAGCCAAGATGGCCGAGCGCCCGGGAGCAGACTCAGAAGAGCGGCCGAGGAGTCCTACTGGGCctattcagGTACGTACGGGCCAGAGGAGGGCTGGTCATCAGCCTACCCAGAATGCAGAGAGAGGAACCAATCCCCAATCAACATCGCAGATCAGGACAGCAAGGTGTCCATGGAGTATCAGGAGCTAGCTTTGGACGGATTTGAGACAGAGTCCTCCAACAAGACTTCAATGAAGAACACTGGCAAAACAGtgGCTATCATGCTGAAGGATGACTACTTTGTGCGTGGTGCGGGCCTGCCCGGGCGTTTTAAGGCGGAGAAGGTGGAGTTCCACTGGGGCCAGAGCAACGGATCTGAGGGCTCTGAACACAGCATCAACGGCAAGAGGTTCCCAGTGGAGATGCAGATCTACATGTATAACTCGGATGACTTTGACAGCCTCAGTGCTGCAATACGTCAGAAGAGGATCATTGCAGTGATGTCGGTCTTCTTTCAGGTGGGACTGAAGGACAACCCAGCAGTGGACCCCATTATCCATGGCCTGAGGGGCGTGGTTCATCATGAGAAAGAAACCTTCCTGGAGCCCTTTGTTCTGAGAGATCTGTTGCCGTCATCATTGGGGGGTTACTATCGCTACACAGGCTCTCTCACCACCCCACCCTGCAGCAAGGTGGTAGAGTGGATCGTCTTCAACAGACCTGTGTTCCTCTCCTACAAACAGCTGGAGGCGTTCTACTCCATCTTCACCACAGAGCAGCAGGACCATGTGAAGTCTGTGGAGTACCTGAGGAGTAACTTCCGGCCAATCCAGAGCCTCGATAATCGTGACGTCTTCAAGTCCGCAGTCAGAGACGCCTGGCTACCTGACCTGACGGACAGCCTGGGAAACCCGTATGGAACCGAGGCATCCAAAGTGTGCAGCAGTGCTCCCATCAACATGAAGGTGCAGCATCTGAACCACACGGCCCTGGTGGTGCGATGGACCCGACCAGAGTTCACCTACCACCCGCCAATTATCTCCTTCCTCATCTCCTACAGCTGGACTAAACACGACGAGTCCTACGAGGAAACGCATGTCACCGACAGCCAACACAAACTGGAAGCTGTCATCACTCCGGTGTCTCCAGACGTGCTGTATCTGTTCCGGGTGCAGGCTGTGTGTATGAATGACATGCGCAGTGACTTCAGCCAGAGCATGCTCTTCAGAGCTAACACAACCAGGATATTTGAAGGGACGAGGATAGTGAAGACTGGGATGCCCACTGTTTCCCCAGCCTCCTCGGCAGACATGGCTCCAATCAGCTCCGGCTCCTCCACCTGGACCTCCTCCGGCCTCCCCTTCTCCTTTGTGTCAATGGCGACAGGCATCAGCCCCTCCTCCAGTGGTAGCCAAGCGACGGTGGCGTCCGTGGTGACTAGTACCCTACTGGCAGGGCTAGGGTTCAGTGGTGGGGTCATCTCCTCCTTCCCCAGCTCTGTGTGGCCAACCAGAGCACCATCCTCCAGCCAGAATCCCACCGCTCCCACCCCTCGTCAGCCCACCAGCGAACCAGCGGCCTCCCAGAGCACAGACGCAGCCAAAGACAATGGAGAGGGCTCCGAGGACGGGGAGAAAGGTGCCaaaggtgagggagaggagggagagaaagaaggagaggaggataaggaggaagacgaggaggagaaagagaaggaaacgAAAGAGAAGAAAGTGATGGCAGACAAGGTAGAGAAGCAGACGGAGAGCACGGTAGTGAAAGAGCCGCCCACGGCCGCACCAGCCTCGACTGccaaagagaaaggaagagaaggaggggagagtgaGACTGAAACTAACACCAGCAGCACTACGCCCTCTAGTGCTGAGGAGGACCagctggtgacacacacacagagtatggtggagacagacacagtggtgACCCCTACCTTGGAGCTAGGGAATGACACGGCAGAGTTCACAGCCCCAGACagcccctcccccaccctccggCCCAGCACAGGAAGGGACAAAAGCCACTGGCCATTCTCCATACACACAGAGAGGACTAGCATGTCCAACCTGACCCAGCAGGGTCCCCCAGGGGTGGGGAGGGTGGAGTGGATcatccccctggtggtggtctctGCCCTCACCTTCGTCTGCCTCATCCTGCTGCTGGCTGTGCTCGTCTACTGGAGgaGGTGTTTTCAGACGGCTCATTTCTACGTGGAGGACAGTAGTTCTCCCAGAGTGGTGCCCAATGACAGCATCCCTGTCATCCCCATCCCAGATGACATGGAGGCCATCCCTGTCAAGCAGTTCATCAAACACATCTCAGAGCTCTATTCCAACAACCAGCATGGCTTCTCAGAGGACTTTGAGgaGGTGCAACGATGCACGGTGGACATGAAGATCACGTCGGAGCACTCCAACCATCCAGACAACAAGCACAAGAACAGATACATCAACATCGTGGCCTacGACCACACTCGGGTGAAGCTACGGCCTTTAGCTGGGAaggacaccaaacacagtgactaTATCAATGCCAATTACGTAGATGGCTATAACAAGCCCAAGGCATACATCGCGGCCCAGGGCCCTCTCAAGTCCACCTTCGAGGACTTCTGGAGGATGGTGTGGGAACAGAACACTGGCATCATCGTCATGATCACCAACCTCGTGGAGAAAGGAAGGAGAAAATGTGATCAGTACTGGCccacagagaacacagaggaATATGGGAACATCGTGGTCACGCTAAAGAGCACCAAAGTGCACGCCTGCTACACGCTACGACGCTTCACCGTGCGCAACACAAAAGTAAAAAAGgGTCAGAAAGGGAACCCTAAGGGGTGTCAGAGTGAAAGAACGGTGGTGCAATACCACTATACCCAGTGGCCTGACATGGGCGTCCCTGAGTACACCCTCCCCGTGCTCACCTTCGTCAGGAGGTCTGCTGCCACCCAGACCCCAGAGATGGGCCCTATGCTTGTCCACTGCAGtgcggGTGTGGGCCGGACAGGGACCTACATCGTCATAGACAGCATGCTGCAGCAGATCAAGGACAAAAGCACAGTCAACGTCCTGGGCTTCCTCAAACACATCCGGACACAGCGCAACTACCTGGTACAAACAgagGAGCAGTATATCTTCATTCATGATGCGTTGATTGAGGCCATCATGGGGAAGGAGACGGAGGTGTTGTCCAGCCAGCTGCACAGCTATGTCAACAGTATCCTTATGCCTGGGGTGGGTGGCAAGACACGGCTGGAGAAACAGTTTAAGTTGGTGACTCAGTGTAACGCCAGGTTTGTGGAGTGCTTCAGTGCTCAGAAGGAATGCAACAAAGAGAAGAACCGCAACTCCTCGGTAGTACCCTCGGAGCGTGCGAGGGTGGGGTTGGCACCTTTACCCGGCATGAAAGGCACAGATTACATTAACGCGTCTTACATAATGGGCTACTACAGGAGCAATGAGTTCATCATTACCCAGCATCCTCTGCCCCACACCACTAAAGACTTCTGGAGGATGATCTGGGACCACAATGCacagatcattgtcatgctgccGGACAACCAGGGGCTGGCGGAGGATGAGTTTGTGTACTGGCCAAGCCGAGAGGAGGCCATGAACTGTGAGGCCTTCACTGTCACGCTCATCAGCAAAGACAGACTATGCCTTTCTAACGAAGAGCAGATCATCATCCACGACTTTATCCTGGAGGCCACACAGGATGACTATGTGTTGGAGGTGCGTCACTTCCAGTGCCCTAAATGGCCCAACCCTGATGCTCCCATGAGCAGCACCTTTGAGCTCATCAATGTCATCAAGGAGGAGGCCATGATCAGAGACGGACCTACCATAGTGCACGATGAgTTCGGGGCAGTGTCAGCGGGCATGCTGTGTGCTCTTACCACCCTGTCCCAGCAGCTGGAGAGTGAGAGTGCCGTGGGCGTCTATCAGGTGGCCAAAATGATCAACCTCATGAGGCCTGGAGTTTTCACAGACATAGATCAGTACCAGTACCTTTATAAAGCTATGCTCAGTCTGATCAGCACCAAGGAGAATGGCTCTGGCCTCACGTCCATGGACAGAAACTGCACCATGGCCATGTCTGATGAGTCAGACCAGGCAGAGAGCATGGAGTCCCTCGTCTGAAGGGCCCACCCACCAGGCCTGAGGGGCCCAAGGCCCTCGCAGACAGAGAGCCACTTACTTTGTAAAATGTCAAGGACTATAAGACAATACTTTTTGAGGCCTTTTTTGCCAGACTCTTGGTTAAATGAAAAACCTGATTACTTTTTTACACTGATAAAAAGTTTTTGATATTTATTTTTTGCCATTTTATGTCTTAATGTTATCCTACTGAGCGTTTGCACCTACGTTTTTGagttcacaacaacaaaacatacttCTGTCTTTCTTGTTTGCACTATAATGTCAGTTACTGCCTATACTAAGCTGATGGACTCTACTACACTTAAACTCTGATTTCAACATTCCATGGCAAAGCCCTCACTCAACTCCTTTTGAGAAGtaggaaaaaaaacattgctcCGTTTGCTCTCTACTAGCTCATATAAGGAAGAGGAGTGAGAGTGTCATAGCTCCATGTTCCATGAATAAGCTGTCCAACCTGAGGTTCATTACAGTagaccacctctcctctcctcacccttgtGGCTCAAATATCACTCATTTGCTGACTCAACACACTCAACAGTCTGGTTTCTGTCACACCTACAGGCAATAGGGTCACCAGTTCTATTTGTTGTTTGATTAACTTTTGTTTATATGACCTTTATCTTCATTGTGCATCTAATTAGCAATTCAAACCCATATTTGAATATTGAAGGTGGTATTATAACAGCTACTGTGAACTTGCATTATTTTTAGTATGATTCATATTatgcttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatactgatcaGTATAGCTTGTGATTTTGTAGATGTCAATGCCAGAGTTGATTTTCTGCACACTTACACCCCCTTCTGGCTCAGTTGGTTTTTGCTTCTTGCTGCTAATAGTCTACACACAGTCACAGAAGAGTCAAATTAAGAAATGATAATGCCCTTGTGTGAGCGGAAACTTCTTTGAGAAAATGGATACTATTGATACAGCCAATTGCTATTTTCTGTGTCATAACCCTATTGAATTTATTATTGGGGTAAAGGACTCCCACGTCACACAGCCTTGTGTACGTCGTTTCTAATCCTCACTGTTGCTCGACTCTGCTTGTGTGTGGTATGATTGTATGCTATGACTGTCGTATGGAGGCCTAAGCAAGGAAAGATTTACTGTGGTTTTTGAGTCCTAGAGTGATTCACATAAACTCATTGACCCTGATTTAGTTGTTGTCATACTGCCACCTCTATATTTCCTGTTAGAATCACTTTGATAAATATCTCCCTTAGTTATCTGAAGGAAAGAGAGACCACCTGTGATTTACATTGAAATAAAATGTGAATTCATTATACAGCACAATGAACATGCTATTAGAATATTTATATTTGATTATCACAACAAAGCATCGAGGATACCTATGATTTGTAACTTTTACCAAAGACTTATACTCATTTCCATTAATATAAatattagagagagggagagcaagttaATTGCATTTGTGTCTGATTTCCTTTTTCAGTGATATGTAGGCTGCTGAGTGAGGATCATTCTGTTGACTTTTTCTTCTGCTTCTTTTGGCATCTTTTTGTTTCCAGGCTGGAATTTGTGCATGAACTCCTCATCACTTGTGTTAGTTTAGGAATTCCCTTTGCTACAGAAGGAGTTCATTGCAATTGTATTATATTTAATTTCTCACTCAACTCATAGACTTACAAAATTAAGTGGAAAGATGCAtcaattattttattattttacccGTCGTGTTTCATCTCCTTCCAAGGAGGGCTTTTGAATGAAGTCATAACTCTCCAACATTTGGAGTAGACAGCTGACTTTTGTCCCTTTGTCAGTGAAGGCATTTTGCATCATTAAACACTCGCTTTTTTcggttttgtcttgttccatcaGGTTAACTCTTAATTTCCTGACTGAGCCTAGTGTCCACTGTCAGATGTGTTGCAAAACACAAACACTAGTGTGTCATGAAAACAATGTACATATTTTGTTGCTTCTATAACCAACCGTTCTCTGGAAACTTTGTATCTATGGTATATAATCATAGAATTTATATTTTCATATAAAGCTATTTTTCTTTCTCTCGTTTCAACTCCTTCGTTGCTTTGCTTTTGTGGTGAAACGTGGAAACCAAGTCTCTGTGCACTGAGCTAGTGGTTGTCATCACATTCCAATACAATTCCACGCCTCCCATTAACTTTAAGTCCGTGATTGTGAtatcattattgttattacttTGTTTTTGTCATTTGTTTCTGAGTTACAATTCTGTTGTCAGAGTGTAATAGAGTAGCTCTAGTAAGTCACTGAATAATTTCGTCCCATTGACCATTTTGAACAGCTGGGCGTTGCTTCTTCTTTTGTAACCtgaaataagaaaaaaataaggaaaaaaatgttttgtttcgTTGAAAGCTATATCAGAGCATTCTATTATAGTGTTATTTAATATGTCAATTGTATTGCTATACTTAAAATAAAATATGGGTTTTGATGTACTTTGTTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1694448 lncRNA upstream 106268 69991857 ~ 69994114 (+) True G1481734
TU1694360 lncRNA upstream 212323 69887768 ~ 69888059 (+) True G1481646
TU1694296 lncRNA upstream 307249 69789878 ~ 69793133 (+) True G1481584
TU1694287 lncRNA upstream 312895 69787257 ~ 69787487 (+) True G1481576
TU1694276 lncRNA upstream 316771 69783394 ~ 69783611 (+) True G1481568
TU1694745 lncRNA downstream 414 70415406 ~ 70415684 (+) True G1482021
TU1694757 lncRNA downstream 24324 70439316 ~ 70440807 (+) True G1482033
TU1694762 lncRNA downstream 35134 70450126 ~ 70450343 (+) True G1482038
TU1694767 lncRNA downstream 44083 70459075 ~ 70459309 (+) True G1482043
TU1694770 lncRNA downstream 47744 70462736 ~ 70525606 (+) True G1482046
XM_021569590.2 mRNA upstream 670723 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA upstream 670723 69373842 ~ 69429659 (+) True LOC110494482
XM_021569588.2 mRNA upstream 737864 69360279 ~ 69362518 (+) True LOC110494481
XR_005037268.1 mRNA upstream 746487 69353820 ~ 69353895 (+) True LOC118940682
XR_005037269.1 mRNA upstream 748864 69351443 ~ 69351518 (+) True LOC118940683
XM_036950547.1 mRNA downstream 6264 70421256 ~ 70429407 (+) False c17h3orf14
XM_021569598.2 mRNA downstream 8688 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569600.2 mRNA downstream 8830 70423822 ~ 70429407 (+) False c17h3orf14
XM_021569599.2 mRNA downstream 10782 70425774 ~ 70429407 (+) True c17h3orf14
XM_021569602.2 mRNA downstream 223212 70638204 ~ 70656059 (+) False nampt2
TU1692848 other upstream 1101199 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1116904 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 1974602 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2436733 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 3232502 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 235951 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 424628 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 763521 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 966952 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1889731 72304723 ~ 72305412 (+) True G1484782

Expression Profile