RNA id: TU1694534


Basic Information

Item Value
RNA id TU1694534
length 1756
lncRNA type sense_over
GC content 0.36
exon number 1
gene id LOC110494487
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70100371 ~ 70415005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatatatactgatcaGTATAGCTTGTGATTTTGTAGATGTCAATGCCAGAGTTGATTTTCTGCACACTTACACCCCCTTCTGGCTCAGTTGGTTTTTGCTTCTTGCTGCTAATAGTCTACACACAGTCACAGAAGAGTCAAATTAAGAAATGATAATGCCCTTGTGTGAGCGGAAACTTCTTTGAGAAAATGGATACTATTGATACAGCCAATTGCTATTTTCTGTGTCATAACCCTATTGAATTTATTATTGGGGTAAAGGACTCCCACGTCACACAGCCTTGTGTACGTCGTTTCTAATCCTCACTGTTGCTCGACTCTGCTTGTGTGTGGTATGATTGTATGCTATGACTGTCGTATGGAGGCCTAAGCAAGGAAAGATTTACTGTGGTTTTTGAGTCCTAGAGTGATTCACATAAACTCATTGACCCTGATTTAGTTGTTGTCATACTGCCACCTCTATATTTCCTGTTAGAATCACTTTGATAAATATCTCCCTTAGTTATCTGAAGGAAAGAGAGACCACCTGTGATTTACATTGAAATAAAATGTGAATTCATTATACAGCACAATGAACATGCTATTAGAATATTTATATTTGATTATCACAACAAAGCATCGAGGATACCTATGATTTGTAACTTTTACCAAAGACTTATACTCATTTCCATTAATATAAatattagagagagggagagcaagttaATTGCATTTGTGTCTGATTTCCTTTTTCAGTGATATGTAGGCTGCTGAGTGAGGATCATTCTGTTGACTTTTTCTTCTGCTTCTTTTGGCATCTTTTTGTTTCCAGGCTGGAATTTGTGCATGAACTCCTCATCACTTGTGTTAGTTTAGGAATTCCCTTTGCTACAGAAGGAGTTCATTGCAATTGTATTATATTTAATTTCTCACTCAACTCATAGACTTACAAAATTAAGTGGAAAGATGCAtcaattattttattattttacccGTCGTGTTTCATCTCCTTCCAAGGAGGGCTTTTGAATGAAGTCATAACTCTCCAACATTTGGAGTAGACAGCTGACTTTTGTCCCTTTGTCAGTGAAGGCATTTTGCATCATTAAACACTCGCTTTTTTcggttttgtcttgttccatcaGGTTAACTCTTAATTTCCTGACTGAGCCTAGTGTCCACTGTCAGATGTGTTGCAAAACACAAACACTAGTGTGTCATGAAAACAATGTACATATTTTGTTGCTTCTATAACCAACCGTTCTCTGGAAACTTTGTATCTATGGTATATAATCATAGAATTTATATTTTCATATAAAGCTATTTTTCTTTCTCTCGTTTCAACTCCTTCGTTGCTTTGCTTTTGTGGTGAAACGTGGAAACCAAGTCTCTGTGCACTGAGCTAGTGGTTGTCATCACATTCCAATACAATTCCACGCCTCCCATTAACTTTAAGTCCGTGATTGTGAtatcattattgttattacttTGTTTTTGTCATTTGTTTCTGAGTTACAATTCTGTTGTCAGAGTGTAATAGAGTAGCTCTAGTAAGTCACTGAATAATTTCGTCCCATTGACCATTTTGAACAGCTGGGCGTTGCTTCTTCTTTTGTAACCtgaaataagaaaaaaataaggaaaaaaatgttttgtttcgTTGAAAGCTATATCAGAGCATTCTATTATAGTGTTATTTAATATGTCAATTGTATTGCTATACTTAAAATAAAATATGGGTTTTGATGTACTTTGTTGAAAACCTTGTGTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1694712 lncRNA upstream 44489 70337090 ~ 70368761 (+) True G1481989
TU1694668 lncRNA upstream 133124 70277253 ~ 70280126 (+) True G1481946
TU1694448 lncRNA upstream 419136 69991857 ~ 69994114 (+) True G1481734
TU1694360 lncRNA upstream 525191 69887768 ~ 69888059 (+) True G1481646
TU1694296 lncRNA upstream 620117 69789878 ~ 69793133 (+) True G1481584
TU1694745 lncRNA downstream 401 70415406 ~ 70415684 (+) True G1482021
TU1694757 lncRNA downstream 24311 70439316 ~ 70440807 (+) True G1482033
TU1694762 lncRNA downstream 35121 70450126 ~ 70450343 (+) True G1482038
TU1694767 lncRNA downstream 44070 70459075 ~ 70459309 (+) True G1482043
TU1694770 lncRNA downstream 47731 70462736 ~ 70525606 (+) True G1482046
XM_036950546.1 mRNA upstream 8118 70100371 ~ 70405132 (+) False LOC110494487
XM_021569590.2 mRNA upstream 983591 69371687 ~ 69429659 (+) False LOC110494482
XM_036950541.1 mRNA upstream 983591 69373842 ~ 69429659 (+) True LOC110494482
XM_021569588.2 mRNA upstream 1050732 69360279 ~ 69362518 (+) True LOC110494481
XR_005037268.1 mRNA upstream 1059355 69353820 ~ 69353895 (+) True LOC118940682
XM_036950547.1 mRNA downstream 6251 70421256 ~ 70429407 (+) False c17h3orf14
XM_021569598.2 mRNA downstream 8675 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569600.2 mRNA downstream 8817 70423822 ~ 70429407 (+) False c17h3orf14
XM_021569599.2 mRNA downstream 10769 70425774 ~ 70429407 (+) True c17h3orf14
XM_021569602.2 mRNA downstream 223199 70638204 ~ 70656059 (+) False nampt2
TU1692848 other upstream 1414067 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1429772 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2287470 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2749601 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 3545370 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 235938 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 424615 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 763508 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 966939 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1889718 72304723 ~ 72305412 (+) True G1484782

Expression Profile