RNA id: XM_036950547.1


Basic Information

Item Value
RNA id XM_036950547.1
length 1258
RNA type mRNA
GC content 0.42
exon number 4
gene id c17h3orf14
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70421256 ~ 70429407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAACTGGGTGGAGTACATGGGAGGTCTGACATTATTTTCTTGGCCTGTCTCATAACTGTTTGTTCAAAGACAGTCTGCGGTGACAGGTGCTACTAAACCTCAAACCCATCACCTTCATGGCTGTCTGGATCAGGTGATGGATTTGTGATTTTTAAGTCTAGGGAAGAGGGCTGTGCTCCTTCAGCAGATGGAAAGACGATATGAGCAACAGAAGAACAAGAGGAGGCAGCAGGTGAAGCTGTCACAAGCTGCACATGAGAGAAACTCCCAGCTCCTCCAGGACTTGCAGAAAATGGAGAATCGTCTCAGAACAAGAGTACTCCCACACCCTGACATCCTCAGTTTGGAGACTCGTTACTGGGCATCAGTTGAGGAGAAGATCCCAGAATGGGAGCGCTTCCTCCTGGGTAAGGGCCCACATCCTAGCAGTGACCCTAGCAGAACACCTAAAcaacaaaaactgaaaactacACCCAGAGACCATGCCCCCACACAAGATGGGGCTCTGCCTCCTCGTCCTATactgaaacatgtcaaatgaCCTGAAGTGGACAATCTGTTTTGGCTTTTGACTTAATCTTATGTGATCAACATGGAGTGAAGGAGAAACTAAAATCAGTTGACAGTTACACTGTAGATTGAGGTTATTGTGCGGTAAATGCTATTTTTTTTATAGGCCATATTTAGTCTCATATGGGCTGTTTTCCTATCAGAATAACAGTATTCTTAGCACCAACATTATTGAGTAGGCATCATGTTGATTTCCATTGTATTTACACTGCAGCTCCTTTTTGTGCTCAGCCATTTTGATATCTCAGGGTGAAGCTCAGATTTAGCCTATTACCCCTCAGTCTGCAGAATTGCTGCTCTTGATTGCAATGTTTACAAGCAATGCTCACACTTTCAGTGTGATGGTATTGCCTTTAACACGTTATGGTAATCCCATCCCATCAGAATTCTATTTGAAACAAAGAATATGGTGTCTTTGAATTCATGGCTCATATCTGCCCACTAGGGGGCGGTAGCACCATAGATTTGGATAACAAAGGCAAATTCCTTCAGTTAGACTCAGGTCATTCACTTCGTCTGTCACTCAGCAATGATTTAATCAAATGTGCTCTTATTTATTTGCCTGTATTGTCTGTATACTAGCTATGTTCTTATGTGTACATTAAAGCACTTTTTTTGTTCATATACTGTGCGATATCAAGCAATGTGCATATGTAACCAATAAAGTTTTTTATTATTCACCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1694745 lncRNA upstream 5572 70415406 ~ 70415684 (+) True G1482021
TU1694534 lncRNA upstream 6251 70413250 ~ 70415005 (+) False LOC110494487
TU1694535 lncRNA upstream 6251 70413289 ~ 70415005 (+) False LOC110494487
TU1694537 lncRNA upstream 6348 70413250 ~ 70414908 (+) False LOC110494487
TU1694536 lncRNA upstream 6348 70413289 ~ 70414908 (+) True LOC110494487
TU1694757 lncRNA downstream 9909 70439316 ~ 70440807 (+) True G1482033
TU1694762 lncRNA downstream 20719 70450126 ~ 70450343 (+) True G1482038
TU1694767 lncRNA downstream 29668 70459075 ~ 70459309 (+) True G1482043
TU1694770 lncRNA downstream 33329 70462736 ~ 70525606 (+) True G1482046
TU1694783 lncRNA downstream 54525 70483932 ~ 70484312 (+) True G1482059
XM_036950543.1 mRNA upstream 6264 70100382 ~ 70414992 (+) False LOC110494487
XM_036950544.1 mRNA upstream 6264 70100382 ~ 70414992 (+) False LOC110494487
XM_036950545.1 mRNA upstream 6264 70100382 ~ 70414992 (+) False LOC110494487
XM_036950546.1 mRNA upstream 16124 70100371 ~ 70405132 (+) False LOC110494487
XM_021569590.2 mRNA upstream 991597 69371687 ~ 69429659 (+) False LOC110494482
XM_021569602.2 mRNA downstream 208797 70638204 ~ 70656059 (+) False nampt2
XM_036950558.1 mRNA downstream 208798 70638205 ~ 70656059 (+) False nampt2
XM_021569605.2 mRNA downstream 242244 70671651 ~ 70712982 (+) True LOC110494491
NM_001124751.1 mRNA downstream 298175 70727582 ~ 70738226 (+) True mx2
XM_021569608.2 mRNA downstream 318430 70747837 ~ 70759905 (+) True LOC110494492
TU1692848 other upstream 1422073 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1437778 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2295476 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2757607 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 3553376 66867525 ~ 66867880 (+) True LOC110494429
TU1695519 other downstream 221536 70650943 ~ 70656057 (+) True nampt2
TU1695603 other downstream 410213 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 749106 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 952537 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1875316 72304723 ~ 72305412 (+) True G1484782

Expression Profile