RNA id: XM_021569602.2


Basic Information

Item Value
RNA id XM_021569602.2
length 3045
RNA type mRNA
GC content 0.46
exon number 11
gene id nampt2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70638204 ~ 70656059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCCCCCTCAACCCAACCCCGGAATTCTCCTTCTCTGGGCGGTCAGTTTCACTGCTAGAAAGACGTAACAGAGGAATAACAAAGTACGGGTGTGTAGCTGCTATCTCCGCCTTTGTCAGCTTTCGATTTTGATAAATAGCGACGAAGTAGAGCACAGTCGCATTCATCTCGTTCAATCATAACCATGGCAGCCCAGGATTTTAATATTTTACTGGCGACAGATTCATACAAGATCACACACTACAAGCAGTACCCTCCCAATGTCAGCAAGGTCTACTCCTACTTTGAGTGCCGCCGCAAAAGGGGGGGCACCCAGTTCAGTGAGATTGTGTTTTTTGGCCTTCAGTACCTCCTGAAGAAGTATCTTTCAGGACGAGTCATCACCGAGGAGAAGATTCAGGAAGCCAAAGTCTTTTACCAGATGCACTTTAGACAGACTGTGTTTGATGAGGAAGGCTGGAGGAAAGTGCTGGAGAAGTATGATGGCCGTCTCCCAATTCGAATCAAAGCGGTTCCCGAGGGGAAGATCATTCCCAGAGGAAACGTCCTCTTCACAGTGGAAAACACAGACCCAGATTTCTTCTGGCTCACCAACTATATTGAGACCATGCTGGTCCAGATGTGGTATCCCATTAGTGTGGCGACCATCTCCCGGGAGTTTAAGAAGATCCTGGCCAAGCACCTGAAGGCCACATCAGGCAGTCTGGAGGGCCTGGACTTCAAACTGCATGACTTTGGCTACAGAGGGGTCTCCTCGCAGGAGTCTGCGGCATTAGGTGGGGCGGCCCACCTGGTGAATTTCTGCAGTACAGACACAGTAGCAGGGCTACTGATGGCCCAGCGATACTACGGCTGCCCCATGGCAGGCTTCTCTATGCCTGCAGCAGAGCATAGTACGATCATCTCGTGGGGGCGGAGCAGGGAGAAGGAGGCCTTCGAGAGCATGCTGGACCAGTTCCCGACAGGGCCGGTGTCAGTGGTCAGTGACAGCTACGACATCTTCAAGGCTTGTAGACACATCTGGGGGGACAAGCTGAAGGAGCGCGTGATAGAGCGGAGCGAAGACTCCTGCTTGATCATCCGGCCTGACTCGGGAGACCCCGCAGAGACCCTCATCGAGGTGATAAAGATTTTGGAGGAGTGCTTTGGTTGCTCCCTGAACTCTCAAGGCTTCAAGGTGCTGCCATCTTACCTGCGTATCATCCAGGGCGACGGCATTGATCTCAACTCAGTGGATGAGATCCTGGAGAAGTTGAGTGACGAAGGCTGGAGTGCTGAGAACGTGTTCTTTGGCTGTGGGAGCGCCCTCCTTCAGAAGCTCAACAGAGACACGCTCAACTGTGCCTTCAAATGCAGCTATGTGGAGATCAATGGGAAGGGGATGGATGTGTACAAGCAGCCTGTGACCGACCCGTCCAAGGGGTCAAAGAGAGGTCTTCTGTCACTTAGGAGAAACTCTGATGACTTCATTGAGACTGTGGAGCGAGGGGTGGGCAAGCCAGAGGAGGACATGCTGGTGATTGTGTTTGAGAATGGCTCCATCGTGCAGGAGTACACTCTGGAGGAGATCCGGAAGAATGCTCGGCTCCTAGAAGACTATATGGCCCCTTCCCAACACAACCAGGACGAGCCCAAGAGCCTGGAGCCACACCAGAAACACATAATGAATGGGGTGCATTAAGCAACCAACACACCCACCTGTAAAGCAATGCACTAACTGTCCGAAAACTGGAGGCATAACGTATAATGAACTGGGTTTACTCATTGCCAGATGGCCTACTACAGTTCACCATTAGAGGAGTGCTCTGATTGTCAGCGAACATAAGAATGGTGTTATTGAAGCTGCACCataagcacattttttttttttttttttgggggatGCAGTAATCTTCAGCACACTAGAGTCACATAATGGACTACTGATCATCAACCTAAATGTTATTCCTTCTTCAACACTTCAGCCCATTGGACCAATGACTGACCTGCTGTCTCATGGTGTTGCATTTCATGGCAACACCTGTTGAGTGGAAGGATTCATCTGATTAAGCTCTATAGCAGGCTTTGAAGAGCTGATATTACTGTTCTATTTCACTAGAGGTAGAGTTGGTTTTAGAATCGACTGATCCTTGTTTTTAGTCTGTTAAGCAGAATTTTTGTAGTACATTAACTGAttctgtttgacatttttttgCCATGATAGCAATGCTGCACTTTGCAGAATCCTAACTTGACATCTTAATTTTTAACTCCGACTTTAGTGTGTTGTCACTAGGACTGATGTGCATGTGTTGTATACATGCAAATGTAGTTATGCACGTGGGTCTCAAATTGGGATTCTGTAAGAGAAACGTGATGGGGGTTTTTGTTCTAATTGATTGATATAACAGTGTGTTATACTATTTATGTTGACCAAAAGCTTCCTAAGACTACATCAAAGACTATTGAAATGTATGGGCTCCAGACTTGTCTGACCTCGTACTTTTATTCTCCTGCCTTTGGAACCATTGCCATTCGAATCAGTCATCTGGGTTTTGATTTTCCTTTCCATTTGAATCCCCATTCTCTGTACAAATTCAGCTTGAAATGAAGTACTTTTGAGAATCGATTTGCTTCGGATGCCTTTAATTGTCTGTGATGTACATGAAATGCTGGTCTGCGTGACTGGTGCTGTCCCAGACTGCTCTTCAGTCTGGTGCTGTCCCAGACTGCTCTTCAGTCTGGTGGAGCCCCAGGTTAATTAAGACCAATGCTGAGGTTTAGAGCTTTTAACCCTTTTCAGACCCATATTATTTGAAGCAAAAATAATTGTAGTGTTCTGATTAATTGGGCAAGAAGCAGTTGACCCTACCTCTTTTTCTATATAAATTATATTGTTACTGTACATGAAGATTGATACTAATGgtatattattgttattgtgtAAATAACTTCAGAAAAGTGTGGTCTGCTTTAAGTTCATTAAATGTGACAGCATTAGTTTGTTTTTGAGTTTTACTAAATGTATATTGTATGACAAAAAATAAATATGCTCTTGACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695512 lncRNA upstream 11004 70626841 ~ 70627200 (+) True G1482737
TU1695503 lncRNA upstream 14984 70622888 ~ 70623220 (+) True G1482728
TU1695500 lncRNA upstream 18325 70619672 ~ 70619879 (+) True G1482725
TU1694835 lncRNA upstream 87689 70549969 ~ 70550515 (+) True G1482106
TU1694770 lncRNA upstream 112598 70462736 ~ 70525606 (+) True G1482046
TU1695598 lncRNA downstream 195869 70851928 ~ 70944023 (+) False slc2a9l1
TU1695601 lncRNA downstream 196750 70852809 ~ 70855156 (+) True slc2a9l1
TU1695666 lncRNA downstream 284372 70940431 ~ 70940734 (+) True G1482873
TU1695753 lncRNA downstream 419307 71075366 ~ 71075569 (+) True G1482959
TU1695755 lncRNA downstream 421348 71077407 ~ 71077707 (+) True G1482961
XM_036950547.1 mRNA upstream 208797 70421256 ~ 70429407 (+) False c17h3orf14
XM_021569598.2 mRNA upstream 208797 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569600.2 mRNA upstream 208797 70423822 ~ 70429407 (+) False c17h3orf14
XM_021569599.2 mRNA upstream 208797 70425774 ~ 70429407 (+) True c17h3orf14
XM_036950543.1 mRNA upstream 223212 70100382 ~ 70414992 (+) False LOC110494487
XM_021569605.2 mRNA downstream 15592 70671651 ~ 70712982 (+) True LOC110494491
NM_001124751.1 mRNA downstream 71523 70727582 ~ 70738226 (+) True mx2
XM_021569608.2 mRNA downstream 91778 70747837 ~ 70759905 (+) True LOC110494492
XM_021569609.2 mRNA downstream 121393 70777452 ~ 70783111 (+) True LOC110494493
NM_001171901.1 mRNA downstream 137556 70793615 ~ 70801618 (+) True mx
TU1692848 other upstream 1639021 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1654726 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2512424 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 2974555 67661987 ~ 67663649 (+) True G1478504
TU1690094 other upstream 3770324 66867525 ~ 66867880 (+) True LOC110494429
TU1695603 other downstream 183561 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 522454 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 725885 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1648664 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1798504 72454563 ~ 72454924 (+) True G1484897

Expression Profile