RNA id: XM_021569605.2


Basic Information

Item Value
RNA id XM_021569605.2
length 2549
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110494491
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70671651 ~ 70712982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCCTCGATCCAACATTAATGCACGAGAGATACAATCACATCCCCTCAACCATCTCCGACGTGGGGAGGAGAGGCAGTTACAATCGGCAAATGTGGACGCCATCGTTTATTTCCGTGAAGCCAATCCCAGTCTGTCTCTATGGTGTTTTATTTTTCAACAAGCCGAATAGAGCTCGGTTTTTTCCGTGCAGTAGCAATTAAAGCCGAGAGTCTTTTGCGCGAGGCACAGACATCAGTCGGTTTGGGTAGCACTGTAAAATTGTGTACGTCTTACTGAACAAGTAGATAAGTATTTTGAAAATGGAATCAGCTAACCAGCTCGTGTCTGTTGGAACGTTTCAAGTGCTTAAATTACCCCTTGGATTTATCCGCGTTTTGGAATGGCTTTTTGCCATTTTTGCATTTGCAACATGTGGAGGCTACAGTGGACAGCTGCGGGTTAGCGTTGACTGTCAGCTTGACAAGGCCAGCAGCAACCTCAGTATTGGCATCGATTTTGCCTATCCTTTTAGGTTGCACCAGGTGTCCTTTGAGGCTCCGCTGTgtgatgggaggaggagggagagtctCTTCCTCATTGGGGACTATTCTTCCTCAGCTGAGTTCTTTGTCACCATTGCTGTGTTCGCCTTCCTCTACTCCCTCATGGCCACCATAGTCTACATCTTCTTCCAGAACAAGTACAGAGAGAACAACCGAGGCCCTCTCATCGACTTCATAGTGACCGTGGTGTTCGCCTTCATGTGGCTGGTCAGTTCTTCGGCCTGGGCCCAGGCCTTGTCGGACGTCAAGGTCGCCACAGATCCAGATGAGGTGCAGGAGCTCATTTCTGCCTGTAAGGTCATGACCAACAAGTGTGGCTCAGTGCAAGGACCCCGTTGGTCAGGCCTTAACACCTCTGTGGTGTTTGGCTTCCTAAACTTCGTTCTGTGGGCAGGAAACATCTGGTTTGTTTTCAAGGAGACTGGCTGGCATAAGGGAGGACCTGCTCGGTACGCTGGAGCGCCACCCGAAAAACAGGCCGCGACCTTCAGCCAGCAGCAGCCCTACAACCAGGGCAGCTTCGACCAGTCAGGAGGCTACAGCGGCCAGGGAGACCGGGAGCAGGCATCAGAatacagtcctgtgggcgaaccCACCTCCTACTCCAATCAGATGTAGCCTTGCAGTCTGATTGGCACATCAGTGTTCTATAAGGGAAAATTCAATCAGGGGTTAAGGAAGGAAGGggttgaagggagggagggggcatgAGGGGCTAGCTCAGTTTGATCCCTCTGATGCATCACGTTGTTGGTGTCCTGTTTGtgcaaaaacataaaaaaaatgtgtccaaATGACCAACATGCAGTTCTTAGGTAAAAATATTCTGGTGCCAGAAAAGGTAAGTTGTCGATTGATACAGTTCCACGCGTTGTATTTTGAAGTATTGTACAAAATCTAGATTTTAGTTACGTTTTTAGATGTTGTTTTCGTGAATGTTGTATTGCCTGTGGCTTGAGTCTGTTTACAGTTTATCTTTTTCTGTGCTAGGTGCAATGCCACAGACCTTTTTAACGAGACTTCTTTTTCAAACTGGTTTGTACTGTCGTGGAAGAGAAATGTGGTCTACAATTGTATAATTCTTGAAGTTTCCTATATAGTCTTGACAAAGTGCATGAAGTTGTGCTATGTGTTTCTATGCTTGTTTGTGCACATTCTAATAATGAAACTGGCAGGATTTAATCTCAGCGTTACAGCAAGGTAACAGTAGCAGTTTATTCCTCATTATTAGAATTTTATTTCATCgcttgtatttatttatatttttttcaagACACCCTTTATAGTATACACTATATTTtaataaatgtgtttttattttatatatttaaaatGATTATTTAAATTGTATCAAGTTTTATTTCACTGCACTAAGGAAGAATTGTTCGTTTTTTGCCATGTTACACAAGATGCCCTTGATCATAAATGGgttttatgtattgatttgtggGGAGTTTTTGATGTTGTTGTTAACAATTGTAAATGGGAAAAGTGTTTGTACCCGCTCTGTTTACAAATGGTTGCTCTTGATTCAAATGAAAGAATAATTTCATACACATCCTGGAGCTGGCTAGCTAGGCCCCAGTGAAAAAGGGCCAGAATAACTAAGTTGCAATTAAAACAGTGAGCTCAGCCAAGCTTGTCTGTATAACCATTCCTGAACACCCTCCATTTTATCTGTCATGTTTTCTCTGTCTTGAATTTTATAAACAAAGTCATTCAGGTTTGTACAACTTTTGGAAAGTTTGTGCAATGAATAAAAATAAGTCTAATGAGATGGTGTCTGATATTGATGATGATAATGAATTAACCACGTGTCTTCAGTGTCAAAGCATGTGGTAAAAAAACTCCATGTATGTACTTGCTCTTCTGTCCGTGTAACATTATAATTTGAACAATTTGAAAACCATTTACCAGTATTTGTAATCTGTTTATGATTACTGAGGGTGGGGGATATTTTACAAGCATTTTGAATAATGCTAATAAAGATGTTGGACAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695512 lncRNA upstream 44451 70626841 ~ 70627200 (+) True G1482737
TU1695503 lncRNA upstream 48431 70622888 ~ 70623220 (+) True G1482728
TU1695500 lncRNA upstream 51772 70619672 ~ 70619879 (+) True G1482725
TU1694835 lncRNA upstream 121136 70549969 ~ 70550515 (+) True G1482106
TU1694783 lncRNA upstream 187339 70483932 ~ 70484312 (+) True G1482059
TU1695598 lncRNA downstream 138946 70851928 ~ 70944023 (+) False slc2a9l1
TU1695601 lncRNA downstream 139827 70852809 ~ 70855156 (+) True slc2a9l1
TU1695666 lncRNA downstream 227449 70940431 ~ 70940734 (+) True G1482873
TU1695753 lncRNA downstream 362384 71075366 ~ 71075569 (+) True G1482959
TU1695755 lncRNA downstream 364425 71077407 ~ 71077707 (+) True G1482961
XM_021569602.2 mRNA upstream 15592 70638204 ~ 70656059 (+) False nampt2
XM_036950558.1 mRNA upstream 15592 70638205 ~ 70656059 (+) False nampt2
XM_036950547.1 mRNA upstream 242244 70421256 ~ 70429407 (+) False c17h3orf14
XM_021569598.2 mRNA upstream 242244 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569600.2 mRNA upstream 242244 70423822 ~ 70429407 (+) False c17h3orf14
NM_001124751.1 mRNA downstream 14600 70727582 ~ 70738226 (+) True mx2
XM_021569608.2 mRNA downstream 34855 70747837 ~ 70759905 (+) True LOC110494492
XM_021569609.2 mRNA downstream 64470 70777452 ~ 70783111 (+) True LOC110494493
NM_001171901.1 mRNA downstream 80633 70793615 ~ 70801618 (+) True mx
XM_036950559.1 mRNA downstream 96989 70809971 ~ 70847390 (+) False LOC110494494
TU1695519 other upstream 15594 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 1672468 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1688173 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2545871 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 3008002 67661987 ~ 67663649 (+) True G1478504
TU1695603 other downstream 126638 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 465531 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 668962 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1591741 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1741581 72454563 ~ 72454924 (+) True G1484897

Expression Profile