RNA id: NM_001124751.1


Basic Information

Item Value
RNA id NM_001124751.1
length 2084
RNA type mRNA
GC content 0.49
exon number 12
gene id mx2
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70727582 ~ 70738226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCAGTTGCAGTTGCAGTGTATTAaccgtatttttttttttatcgcaAATCATGAATTATACGCTGAACCAACATTATGAGGAGAAGGTGCGTCCTAGTATTGACCTCATCGACTCTCTACGCTCCCTTGGCGTAGAGAAGGACCTTGCGCTGCCTGCCATCGCCGTGATAGGGGACCAGAGTTCGGGAAAGAGCTCCGTGCTGGAGGCGCTGTCTGGGGTGGCTTTGCCAAGGGGTAGCGGTATTGTAACACGATGCCCTCTCGAGCtgaagatgaagaggaagaaagaaggagaggaatgGCACGGAAAAATCAGCTACCAGGACCGTGAGGAGGAGATTGAGGATCCCTCTGATGTGGAGAACAAAATTCGGAAAGcccAGGATGAAATGGCAGGTGTGGGGGTGGGTATCAGTGATGACCTCATCAGCTTGGAGATTGGCTCCCCTGACGTCCCAGACCTCACACTCATCGACTTGCCAGGCATCGCCCGTGTAGCTGTCAAGGGTCAACCTGAGAACATTGGGGAACAGATTAAGAGACTGATACGGAAGTTCATCACAAAGCAAGAAACAATCAACTTGGTGGTTGTGCCATGCAACGTTGACATTGCAACCACAGAGGCTTTGAAGATGGCACAAGAGGTGGACCCTGATGGGGAAAGGACATTAGGCATCCTGACTAAGCCTGACTTGGTAGACAAAGGCACAGAGGAGACTGTGGTGGACATAGTTCATAATGAGGTTATCCAGCTGACAAAGGGCTACATGATAGTCAAGTGCAGGGGCCAGAAAGAGATCATGGAGCGAGTCTCACTGACCGAGgccacagagagggagaaggcttTCTTCAAAGAGCACGCTCATCTCAGCACACTTTATGATGAGGGGCATGCCACCATCCCCAAACTGGCGGAGAAATTAACTCTTGAACTAGTGCAACATATCGAGAAATCCATGCCTCGTCTAAAAGAGCAGATTGAGGAAAAGCTGGAGGAGACACGCACCGCTCTGGAGAAATGTGGTACCGGACCCCCTGAAGACCCAAAAGAACGGCTGTATTTTCTGATCGATAAAGTGACTTTGTTCACCCAGGATGCCATTAACCTGAGCACTGGGGAGGAGCTGAAAAGTGGAGACATCAATGTCTTCTCCACACTCAGAACAGAGTTCGGGAAATGGAAGGCATACGTGGATCGCTCTGGAAAGAACTTTAATAAGAAGATTGAAAAAGAAGTGGCTGATTATGAGAAGCGGTACCGTGGAAGGGAGCTCCCAGGGTTCATCAACTACAAGACCTTTGAGGTGATTGTGAAGGACCAGATCAAACAACTGGAAGAACCAGCAGTCAAGAAGCTGAAAGAGTTATCAGATGCTGCTAGGAAGGCGTTCATACTGCTGGCTCAGAACAGCTTCACAGGTTTCCCTATCCTTCTGAAAACAGCAAAGACTAAGATCGAGACCATCAAGCAGGAGAAGGAGTCTACGGCTGAGTCCACGTTGAGGACTCAGTTCAAGATGGAGCTGATAGTGTACACACAGGACAGCACCTACAGCTCTAGcctgaagaagaggaagagggaggaggaagagttgGAGGAGGGAGAGTTAGTTAAAAATAATTTAGGGAGTTGGAAAGGGTTACCTGTTGTTTCTGTAAGGAGTACTGTCAATGGCCTTGACACCCATGCTACCCTACGGGAGATGATGCTGCACCTCAAGTCCTATTATCATATTGCCAGTCAGCGTCTGGCTGATCAGATTCCCATGGTGATCCGCTACCTGGTGCTGCAGGAGTTTGCTTCCCAGCTGCAGAGGGAGATGCTTCAGACTCTGCAGGAGAAGGACAACATCGAGCAGCTGCTGAAAGAGGACATCGACATCGGCAGCAAGAGGGCTGCACTGCAGAGCAAGCTCAAACGCCTGATGAAGGCACACAACTACCTAGTGGAGTTCTAGTATGGACAGCTGCTTGTTAACATTTAGGATGGTCTTGTCTAACTTCAGATAGGTTGGTTAATGGAAGTAGGCATTGAGGTTTGGGGTAGATTCTGTTATCTAAGTTATAATAAAGTTACTATGC

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695512 lncRNA upstream 100382 70626841 ~ 70627200 (+) True G1482737
TU1695503 lncRNA upstream 104362 70622888 ~ 70623220 (+) True G1482728
TU1695500 lncRNA upstream 107703 70619672 ~ 70619879 (+) True G1482725
TU1694835 lncRNA upstream 177067 70549969 ~ 70550515 (+) True G1482106
TU1694783 lncRNA upstream 243270 70483932 ~ 70484312 (+) True G1482059
TU1695598 lncRNA downstream 113702 70851928 ~ 70944023 (+) False slc2a9l1
TU1695601 lncRNA downstream 114583 70852809 ~ 70855156 (+) True slc2a9l1
TU1695666 lncRNA downstream 202205 70940431 ~ 70940734 (+) True G1482873
TU1695753 lncRNA downstream 337140 71075366 ~ 71075569 (+) True G1482959
TU1695755 lncRNA downstream 339181 71077407 ~ 71077707 (+) True G1482961
XM_021569605.2 mRNA upstream 14600 70671651 ~ 70712982 (+) True LOC110494491
XM_021569602.2 mRNA upstream 71523 70638204 ~ 70656059 (+) False nampt2
XM_036950558.1 mRNA upstream 71523 70638205 ~ 70656059 (+) False nampt2
XM_021569598.2 mRNA upstream 298175 70423680 ~ 70429407 (+) False c17h3orf14
XM_021569608.2 mRNA downstream 9611 70747837 ~ 70759905 (+) True LOC110494492
XM_021569609.2 mRNA downstream 39226 70777452 ~ 70783111 (+) True LOC110494493
NM_001171901.1 mRNA downstream 55389 70793615 ~ 70801618 (+) True mx
XM_036950559.1 mRNA downstream 71745 70809971 ~ 70847390 (+) False LOC110494494
XM_036950562.1 mRNA downstream 116922 70855148 ~ 70862127 (+) False slc2a9l1
TU1695519 other upstream 71525 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 1728399 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1744104 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2601802 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 3063933 67661987 ~ 67663649 (+) True G1478504
TU1695603 other downstream 101394 70839620 ~ 70841230 (+) True LOC110494494
TU1696175 other downstream 440287 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 643718 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1566497 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1716337 72454563 ~ 72454924 (+) True G1484897

Expression Profile