RNA id: XM_036950559.1


Basic Information

Item Value
RNA id XM_036950559.1
length 5939
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110494494
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70809971 ~ 70847390 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGGCAGCGACGTGCGTGCGTGAGGTATAGATTGTAAAAAAAATGTGACGTCTGCATCCCAGAATGCAGTTTGGTAAACAGACATGGAAGCACCTGGTAAAGACCTCCACAGTCAGTGAGCATTGCATTCGTTCTTTCTGCACGATCTCCATACTTTAATATCCGCTACATTCAACAGATTTGTATCTGTCTGCCGTCACATTTGCATCCCCAACGTCCAGGACCTTGATTCCTTCCACAACTTGTGTGGGGCGACCAGCGATCACCCAAACTGATGAGGTTCTACTGATCCAGTTACGATTGagttcccttttccacatttgaCAAGCGGAAAGAATGTCGGAAAGGGCCGATGATGACGTCAGGGGGGAGCAGCGCAGAGCGGCCAGGCAGCTAAAGCAGCAGCAGATCCAGCGGGGAGAAGGCTCCACAGCAATGGCGACTGTTGCGGAGCGCAGATCCCTGCCTAGTCCAGAAATGATGTTGGGACAGTCTTGGAGCAACTGGGTCGATGCTGCCATACCCAAAGGCAACGACGGTGCTGAATCGGAGGAAAGTTTGAAGGAGTTCGGGAAAAATCGAGAAGCCATGCGATTGTGCAGAGATGACATGCCCATATTTGGCCAGTGTCCAGCACAGGATGACTTCTACCTGGTGATGTGCAGCCACTGCAGTCAGGTGGTGAAGCCCCAGGCCTTCCAAGCACACTACGAGAGAAGACACAGCTCGGCCAGCATGCCCCCCTCCACCTCGGCCCCCTCGTCAGCCTGCCCTCTGTCTTGGAGCAGGGGCAGTGGGACTGGGGCGGGGGCCGGGGGTGTCAGTGGAGGGGCCATGGGCCGCTCCTCCAGTGGGACCAGCGCCTTGTCCAACTCCAAAATCCTCAAACCAGCCAAAGAGAAGCTGCCAGGCTTTCAGCAGAGACCTCACTTCCCTCCCTTCAGGGAGCTCAATGACAAAATccTGACCCCTGCGGTCAAAGTGGAGAAGATGCGTCTGAAGGTGGATGTGTGGGCCAAGCTGGTGCAGGCTCCCTTGGCCGCCACGACATCGTCCTCCTCCAGCAGCACTGTGAGCTCCTCATCACCCCTGAAGCCAGGCCTTAACTGTCCCTCCATACCAAAGGCTCCCTTGCTGGCCCCTGGCCAGATCCCCAATGGCAAGGGCCacatctccctctctgccctggACAAGAAGCAGGACAACAGTGCCAGTAACAGACAACACCTCCACAAGAGACTGTCAGAACGTGAGTTTAATCCAGATATCCACTGTGGGGTCCTGGATATGACAGCTCGGAAGCCATGCACACGATCCCTAACATGCAAGACACATTCCCTAAGCCAGCGGAGGGCAGTGCTGGGCCGGAGGAAGCGCTTTGACACACTGTTGACTGAGCACAAGAGCAAAGCCCGGGAACGGGAGCTGCAGCACACCCACCCCCAGCAGATCCCCCCTCTCAGggacccccacccctccccctcccggCTCGCCCCCCACCACGACGCCCACCAGGTCGCTCAAGGCAACGGAGCCGCCGACGCCGCCACCAAGCCTTTGGTGCTCGGCAAACCCAAACCTCAAAATCCTGGTCTTCCACGACTGAACAGCAGTATCTCTCAAGGAGGTGGCGGTTTCCTGGAAGACCCCTCGTTGGTCCACGAGTCGCCCCACCATTCTACGCCCACCCCCGACGGGGTCTCCTGCCTGTCCAGTGACGAGGGGGAGAACGACGAAAGGGAGGAAGGCACAGACAAACTGGACTGTCACTATTCAGGTTACCAACCACGGCCGGCAGCTTACTGCACCTTTGGAAGTCGACTATTTGGGAGAAGCTGCTACTCGTTTGACCGGCGCTGGGATCGAATGCGATGTGCTCTTACCGCCATGATGGACAAGCACGTCAACACTCAGATGTGGAAGAAAATCCCTTTGGCCTTGGAGAATTCCTCTTCTGCGCCGGCCCACAGGACAAGCACAAACTCCCTGTCCTCATCCCACGGTAGCACACCTGCCTCAGGCTTCCTCAGCCCCTCTGCGCCCCCTCCGCCCCCCTACACCCAGTCCTACGACAGCAAGTCTGTGCTCTCGTACGGGACCACCTTAAACGCTCGTGCCTCCCAGGGCACGGCCGACCACCCTGCCTACAGCGCAACACAGGCCAGACAAGTGTCTTCGTCGCCCCAGATGCCTTCAGCCCACTCCTCGGTCACCACCCTGGCGTCAGGACGACCGCTCAAGTCCAGATCCAGCGGCAAGTCCTTCAGACCCCGGGAGTCTTCCTCCACAGCCGTCATAACCAACTCCACCAGTGGGGGCAGCACTAGCCTCAGCtcggggaagaagaagaagaacagctCCCTCACATTGTCTCACGCTACCACCTACTCCTCAGAGTCCTCCTCCAACCCCACCTCTTCCTCCTTCAAGAAGAACTGCACGGTAAACAGTGGCAGCTCAGGGAGCACGTCCCACCACGCCCCACTAGTCCCCTCATCTCACAGCGGCGTCCACAGTGTGGGACTTAACTGTGGCCCCAATGCCAGGACCAACTCCCTCAGTCTGAAGGCAGAGCCCTCGGGGCCAGCGGGGGTGTCGGGGCCTGGGGTCAGAGGCCCCCCCTCGGGCAGCCCGGCCGAGTCCATCAAAAGGATGAGTGTGGTGATGAACAGCAGTGACTCCACCCTCTCCTTGGGGCCTTTTGTCCACCAGGCCTCAGAGCACCACAGCAGGTTCAGCCATGCCCACACTGACGGCCGCCTGGAGGGGAAGAAACGCAAGGGCTCCCCCGCTGCCAGCTCCGTCAACAGTGGAGGTGGACCAGGCAGGCCCAAAGTGGCCAAGTCTCCAGCAATCAACAACATCCACGGCAAACATGGACGCACAATCCCAGGAGGCCCAGGGCTCCCCAACAACTCCCTCATCCATCAGccaAAGGCCCGCCCCTGACAGCAGTGGCTGTGTCCTCTGTATGGAACTGAGGGGCGGATGATAAGGGGGCAACCTGTACACTGCTCTGGACTGCACGAGGCCTTCTAATGCCTTACTCTCAGCTTCCCATGATCCTCAGGGTGGAGGTGATCTGGACAACCCTGTGATGTCATCTATAGTGGAACTATTTCTCCTAAAGCCATGTGGAGGTGGCAGGCGTTAGCACCTGGGGTGGGTCTCACCTGTCCCCCTGTCAGTCAGTGTTGTCCTGAGGTAGGTCTTCCTATGGAGAGGAGGGAGTTGCAGCCTTCCTGCCCTTTGACCTCCATGTTGAAGTTCCAGGGGTATGGAGGGAGGGTGAAGGGCTGGCACAACAGCCATGCCACCGCCCACCCACCATCATGATGCAGAGCCACTGGGAGTGACTGGAGAGCCAACAAGCCGCAATCTGTTGGTATCTGACGATctcttccgtgtgtgtgtgtgtgtgtgtgagagagagtgtttgaCTTTGTCACGTCAGATTCTACTGGACTACTGGAAATTCAAACTTACACCTGCAGGCCTGAACTCAGAAGCCTTGAATGGAGAGGGCAGGAAGACAAACTGTCACTTACATAACTTCAATcacattgttttgtttttatccTTTCACTACAttttgttggttggttggtgtgtgtAGATACCGCCATGTTATGTACAGTATCCAGAGATGAATGATATGAGCAGATCCAGTCAATTCTATATGAGTTCCATACATGACCCAAACAATTATGCAAGTGTTACTTTATGTTTCTTATCATGTTTTCACTGAATTTAACTACagcagatgggggggggggtcaattgtGCATGCATATGTGAAAAAGGATGCCTGATGTGACAATTTGATTGAATGGTAATGAAAGAGGCACTAATGCTCACGAAAGACCAGCTGAGtgcttgggactataaggttctagctgaaaaaagatgattctgagataattAGCTTTAAAGTTAAGCAGTTTTTATATTGTATTCTTTTGAACAACATGAATTGTGTTATTTCGAGTACTATATAGGTAGGGAACATTGAACAGAATAAGGCTGTCAATAACTAACTACATTTGAACAAAAATGCAGATTTACCTTAGTCCCAAGCTTGAAGTcgtaattcctataataacatTTTACTAATGAACAGCCACAGTAGACCTAGCCCTAACTGTGAACAGCACTAAACAAACACAGACCCACTACTTGCTTTAGGACATTTAAGTTGTGCTTATTTGCCCCAAAAGCTAGCCAAAGGCAGCCATCTGTTTCTCCCACCATAGTCTGTAACCACTATCCCAGCTATGGCTATTGTTTCCATTCCGGTACCTTTAGTAATGTCACAATACTGTTTGTGAGTAGAGGGGTTTGTAATGATTGACATCAAACTTGTAAGTCTTTCATCAAGCATGAAGTCTTAAACTGGCAATACTTCCCTCTGTCTGAGATGATGCCTCTTTGGAGTAAGTGGTGGTTTTTGGGGGGTGTGAGATTCATGGAGATGGCTTCAGAGTAAGTTACTACTTTTTTGTAACCCCTGTAAATTTCGTAAACTCACCTGATGTCAGGCAGCAGAGAAGTTGAGTGTTTTGTATCTTACTTTAGCTTTTTCTTGTATGTATTGAACAAACATCGAAGTATCCCTATTTCAGAATACATATTTTGTTAACGAATTGTACATattgaaatatgtatttttgCACAGGCATTTTCTTAtacaaaatgttttggtacaattGAGATTATTTATTTAGTAATTGAAATAATACGTTTAAGAACTAAACTTATTTGAAGTGGTTCACTGCCAAGTCTAACGCAATAGGCCTATAACTAGAGGTTGAAGCATCTCATGAATCATGTACTGGGATCCTTTAAAAGGTGAAGTGTTTCCACTGTAGCATGTGTTTGTGTGATAGACAATATGTTTTGTTTGAACTCACCAAGGTCTTACTTGggctttttactattttcaagtTGCCTCAATCAAAAAAAGAATTATCATTTTGTGACCCAAATAGCCTGATTCTGAAATGCCCCGCAGGCTGAAAGCTGTGCCAGTTGTCTAAGCGATTTCTATGGATCCACTCAACTAATTTGGCTGCATTCGTGTTTACAccggcagcccaattctgattagATTTTTCTCcaataattggtcttttgacgaataacagatctttttcagagctgatctagTGAAAAGAATTGGGCTTCCTGTGTAAACACGACCGCTGTAGACTATATAACATTTCATAATTGACACTTTCCTTTTAAGGCTGAAGGGACTTAAGCAATCATGATAAACACTTCAAACAGTGCAACTGCTTGCATCATTGTTGCCAAACATAATTTGAAACTCAGCATTAAGAAAATTTAGTTTTCAGCATTTCAAAATGCTGAAATTAAGAAAGTGCCTGAATTTGTTTCACACTGACTGAGGACAGTTGTTTTTTTAGTTTTACCTTACTTGAATGTTCAGTGTTTTAGGAGCTTGCTTTTAAAATCTGCCTATGAACCCTAAATGTGGTGTAAAAAAAGAGGCTTGTCAGCGAGCTGGTATGAAACCTTGGTGTTAACTCTTCTTTTGATTTATGTTTTCCAGATGAGGTGCAGACCAGGGGGTGTTGAAGCTTCCTGGTCAATTATGAATTGCTTGTAGCAGGTTCAGTAAAGTGTTTTGTTTACCCTCAACCTCCACTGAAAACGCTAACCTTGTTTTTATCAAGTACCACAGACTTGGAATGTGAAACACAGCTTGTGGGAGGAAAATATCCTCAGTAAGAGCGTGCAGTTTTTCTATACATTATCAGAATCATTTGATCAGCTGGACTTGTATTGGCTGCTATGTAATTCATGAACAAACATGGTAGGTTAGATTTACTTAATATTTAAAGAAGATTGTATATTCTATTTGTTTTGTAACAGGTttctgtaaataaataatttatacAGCTATTTATACAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695512 lncRNA upstream 182771 70626841 ~ 70627200 (+) True G1482737
TU1695503 lncRNA upstream 186751 70622888 ~ 70623220 (+) True G1482728
TU1695500 lncRNA upstream 190092 70619672 ~ 70619879 (+) True G1482725
TU1694835 lncRNA upstream 259456 70549969 ~ 70550515 (+) True G1482106
TU1694783 lncRNA upstream 325659 70483932 ~ 70484312 (+) True G1482059
TU1695598 lncRNA downstream 4538 70851928 ~ 70944023 (+) False slc2a9l1
TU1695601 lncRNA downstream 5419 70852809 ~ 70855156 (+) True slc2a9l1
TU1695666 lncRNA downstream 93041 70940431 ~ 70940734 (+) True G1482873
TU1695753 lncRNA downstream 227976 71075366 ~ 71075569 (+) True G1482959
TU1695755 lncRNA downstream 230017 71077407 ~ 71077707 (+) True G1482961
NM_001171901.1 mRNA upstream 8353 70793615 ~ 70801618 (+) True mx
XM_021569609.2 mRNA upstream 26860 70777452 ~ 70783111 (+) True LOC110494493
XM_021569608.2 mRNA upstream 50066 70747837 ~ 70759905 (+) True LOC110494492
NM_001124751.1 mRNA upstream 71745 70727582 ~ 70738226 (+) True mx2
XM_021569605.2 mRNA upstream 96989 70671651 ~ 70712982 (+) True LOC110494491
XM_036950562.1 mRNA downstream 7758 70855148 ~ 70862127 (+) False slc2a9l1
XM_036950561.1 mRNA downstream 7769 70855159 ~ 70862127 (+) False slc2a9l1
XM_021569612.2 mRNA downstream 8020 70855410 ~ 70862127 (+) False slc2a9l1
LOC110494500 mRNA downstream 324623 71172013 ~ 71173244 (+) True LOC110494500
XM_036950570.1 mRNA downstream 602270 71449660 ~ 71518366 (+) False slc25a26
TU1695519 other upstream 153914 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 1810788 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1826493 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2684191 68122538 ~ 68125780 (+) True G1479621
TU1690884 other upstream 3146322 67661987 ~ 67663649 (+) True G1478504
TU1696175 other downstream 331123 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 534554 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1457333 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1607173 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 2197347 73044737 ~ 73045588 (+) True LOC110494525

Expression Profile