RNA id: XM_036950561.1


Basic Information

Item Value
RNA id XM_036950561.1
length 1890
RNA type mRNA
GC content 0.47
exon number 13
gene id slc2a9l1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70851928 ~ 70944023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACACTGGTCTGCTACTTCCGCTACAGCGAGAACGTCAGGCAAGATCAGATGGTGCTGCCCTCGTCTGGCTAATAAGGGAATGTCCGCCGAGCACACGAAAGACGAGTAGGACTAATGTGACAGCGACGCAGTGGTTGAAAGTTAAGCTCCCTCTGAGATACCCGTGGTAATGCTCTAGTCTTCATAATCATTTTGGGTATTGGCGGATCTTTTCAAAATGGTTTCCATGTTACTGTCATCAGTTCCCCTTCACCATACATCTGGAGCTTCATCAATAGCAGTTGGATTGGGCGATATGAAGAAACCCCACCGGCACAGACAGTCAAACTCCTCTGGTCAGCTATAGTGTCTCTGTACGCTGTGGGGGGTCTCCTGGGCTCGATGAGTGTCAGGTGCATTGCTGGGAGGTTTGGCAGGAAGAGAGCCATGATATGGAACAATGTTGTCAACATTGTTGCTGCAGTGATCATGTTCACCAGTAGGGGGGCAAACTCCTTTGAGATGATCCTGATTGCTCGGTTTCTGTTTGGATTCACTGCAGGTTTAGGAGTGAATATCCATGCAATATACCTGGGTGAAAGTTCACCCAAAAAGATAAGGGGCATGGTAACACTAACATCTGCTACCTTCCTCTCCATTGGTAAACTGTCAGGACAATTTTTTGGACTAAGGGAGATTCTTGGTCGTGAGGATAGCTGGAACATCCTACTGTGTGTTTCAACATGTTTCTCAGTGGTACAGCTGCTAACACTTCCCTTCTTCCCTGAGGCCCCAAGATACTTATTGATAGAAAAGGGCAATGCAGAGGCATGCAAAAAAGctcTGCAGAGTCTGTGGGGCAGGGGTGAGTACAAGCTGGAGATGACGGAGATGGTGTTGGAGCAGGCTGCCATAAAAGGCGAGACCTCGAAGACTCTCCTGGAGCTGCTGAGAGACAGGAGCGTACGATGGCAGCTCATCACCATGGTGGTGGTGTACGGCTGCATCCAGTTCTCTGGCATCACTGCAATCAGTGTGTTCTCCTTTGACATCTTCAAGGAGGCAGGCATCCCCCTGGATAAGATCCGCTATGTGACTCTGGGTATTGGAGTGTCTGAGGTCCTCACCTCCATCACCTGTGGCCTGTTGATCGAGAGTGTGGGGAGGAGAGCGCTACTCTGGGGGGGCTTTGGGGCCATGTCTGCCATCATGATATTAATCACCATCACTCTCAATCTAAAGGATTACAGCTTCTGGATTCCATACAGCACCGTTGGCTTGATATTCCTCTTTGTCATTTTTTATGGAGGAGGACCAGCTGGAGTGTTGCCGTCTCTCACACATGAGATCTTCATCCAATCGTGCCGGCCTGCAGCGTTTGTGTTTACTGGGATCCTGCGCTGGCTTGGCTTTTCTGTGCTGGGACTAGTTTTCCCTTTTCTTATCGGGCTGCTAAAATCAGTCTGCTTCGTGCTGTTTGCCTGCATGTGTCTGTTGGCGTCATTTTACATCTTCTTCTACCTGCCGGAGACCAAGGGGAAAACCCTCCTGGAGATCTCAGAGGAGTTTAAAAACATCACACTGTGTGAAAACCCCCTCTCAGTTGACAAGAGTCTGGAGACAAAGTTATGAAAACTGTTGATAGCAAATTAACTGAGATTTATCCCACTCTGAGTTGTTTAGTTTGTATCATATCTTCATACAATGTGCACTCACAGCAtatattaaatcaaatgtatttatatagcccttcttagatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtatatATACAATTGTTTTATGCATCTGAATGACTTTTAGAGACCTATTGATTTATAATAAAATTACTTTTCAAACAATCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695601 lncRNA upstream 3 70852809 ~ 70855156 (+) True slc2a9l1
TU1695512 lncRNA upstream 227959 70626841 ~ 70627200 (+) True G1482737
TU1695503 lncRNA upstream 231939 70622888 ~ 70623220 (+) True G1482728
TU1695500 lncRNA upstream 235280 70619672 ~ 70619879 (+) True G1482725
TU1694835 lncRNA upstream 304644 70549969 ~ 70550515 (+) True G1482106
TU1695666 lncRNA downstream 78304 70940431 ~ 70940734 (+) True G1482873
TU1695753 lncRNA downstream 213239 71075366 ~ 71075569 (+) True G1482959
TU1695755 lncRNA downstream 215280 71077407 ~ 71077707 (+) True G1482961
TU1695756 lncRNA downstream 217162 71079289 ~ 71079520 (+) True G1482962
TU1696601 lncRNA downstream 585780 71447907 ~ 71448238 (+) True G1483721
XM_036950559.1 mRNA upstream 7769 70809971 ~ 70847390 (+) False LOC110494494
NM_001171901.1 mRNA upstream 53541 70793615 ~ 70801618 (+) True mx
XM_021569609.2 mRNA upstream 72048 70777452 ~ 70783111 (+) True LOC110494493
XM_021569608.2 mRNA upstream 95254 70747837 ~ 70759905 (+) True LOC110494492
NM_001124751.1 mRNA upstream 116933 70727582 ~ 70738226 (+) True mx2
LOC110494500 mRNA downstream 309886 71172013 ~ 71173244 (+) True LOC110494500
XM_036950570.1 mRNA downstream 587533 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA downstream 587533 71449660 ~ 71518366 (+) False slc25a26
XM_021569629.2 mRNA downstream 808528 71670655 ~ 71678016 (+) False kbtbd8
XM_021567510.2 mRNA downstream 816262 71678389 ~ 71688655 (+) False LOC110493246
TU1695603 other upstream 13929 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 199102 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 1855976 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1871681 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2729379 68122538 ~ 68125780 (+) True G1479621
TU1696175 other downstream 316386 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 519817 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1442596 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1592436 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 2182610 73044737 ~ 73045588 (+) True LOC110494525

Expression Profile