RNA id: TU1695598


Basic Information

Item Value
RNA id TU1695598
length 372
lncRNA type read_through
GC content 0.52
exon number 3
gene id slc2a9l1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 70851928 ~ 70944023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGAGGTCGGGCCTCTTCTGGGCAATCATGCAGACGTAgacggtgtatgtgacaaaagtCTTGTAGTCCATGAGCTCGTAGGAGGTGAAGGTGGACACCGTGTCCAGGAAGAGCTCAGCAGCCTGTTTAAAGTCACGGATGGCCACACAGTACAGGCCCTGGTACACCTTCAGACGGTTCCTCCTGTCCCAGTCACCCCCCTCCTCAATAAGGCTTTTGGCTTTCTCAGTGTTGCGCGTGATGAGGTCACTGTCCATGTAGAACAGTCCAATCCTTAGCAGGTAGAACACAATGTCTAGCCGATGTCCCAGGGCCACAGTCTTATCAAAGGTCTTCCTGAAGGCAGTCAACGCTTCCTCCTTTTCATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1695512 lncRNA upstream 224728 70626841 ~ 70627200 (+) True G1482737
TU1695503 lncRNA upstream 228708 70622888 ~ 70623220 (+) True G1482728
TU1695500 lncRNA upstream 232049 70619672 ~ 70619879 (+) True G1482725
TU1694835 lncRNA upstream 301413 70549969 ~ 70550515 (+) True G1482106
TU1694770 lncRNA upstream 326322 70462736 ~ 70525606 (+) True G1482046
TU1695753 lncRNA downstream 131343 71075366 ~ 71075569 (+) True G1482959
TU1695755 lncRNA downstream 133384 71077407 ~ 71077707 (+) True G1482961
TU1695756 lncRNA downstream 135266 71079289 ~ 71079520 (+) True G1482962
TU1696601 lncRNA downstream 503884 71447907 ~ 71448238 (+) True G1483721
TU1696618 lncRNA downstream 534445 71478468 ~ 71478743 (+) True G1483735
XM_036950559.1 mRNA upstream 4538 70809971 ~ 70847390 (+) False LOC110494494
NM_001171901.1 mRNA upstream 50310 70793615 ~ 70801618 (+) True mx
XM_021569609.2 mRNA upstream 68817 70777452 ~ 70783111 (+) True LOC110494493
XM_021569608.2 mRNA upstream 92023 70747837 ~ 70759905 (+) True LOC110494492
NM_001124751.1 mRNA upstream 113702 70727582 ~ 70738226 (+) True mx2
LOC110494500 mRNA downstream 227990 71172013 ~ 71173244 (+) True LOC110494500
XM_036950570.1 mRNA downstream 505637 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA downstream 505637 71449660 ~ 71518366 (+) False slc25a26
XM_021569629.2 mRNA downstream 726632 71670655 ~ 71678016 (+) False kbtbd8
XM_021567510.2 mRNA downstream 734366 71678389 ~ 71688655 (+) False LOC110493246
TU1695603 other upstream 10698 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 195871 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 1852745 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 1868450 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 2726148 68122538 ~ 68125780 (+) True G1479621
TU1696175 other downstream 234490 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 437921 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1360700 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1510540 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 2100714 73044737 ~ 73045588 (+) True LOC110494525

Expression Profile