RNA id: LOC110494500



Basic Information


Item Value
RNA id LOC110494500
length 697
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110494500
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71172013 ~ 71173244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAAGGCGCAGAGGGACCCAAATTCTACATCCACATGTCCAACGCTTACAGGAGTGTCACCATCGAGCACAAGAAGCATTGGACAGCCCTCAACTAAATCCTGCTCAACCTGAATGTGGCTGATCTCGTCACGGTGTTCGGCGGCTTCACCACCACACTCTACACCTCCATGAATGGCTACTTTGTCTTCGGCCTCACCAGCTACATCATTGAGGGCTTCTGCGCTACCCACGGCGGTCGGATCGCCCTCTGGGCCCTGGTGGTGCTGTGTAGCGAAAGGAGGTTGGTTGTCTGCAAAGCCTATTGTAAACTTGCGCTTCAGGGAGAGCCATGCCATATTGATGGTGGCATTCCCCTGGGTGATCGCTGCCGCTTGTTCCGTGCCCCCTCTGTTCGGCTGGTCACGTTACATTCCGAAGGGCATGCAATGCTCATGCAGTTTTGACTATTACACTCAGACCTCAGGGATCAATAAAGATTCCTATGTCATCAACATGTTCTTCTGCCACTTCACCATTCCCCTGGTCATCTCCTTCTGCAATGGCAACCTGTTCTGCTCCATCCAAGATGCTGCTGAAACCACCCAGAGGGCTGAGAGGGAGGTCACCAACATGGTCATCATGATGGTCAACTCCTTCCTGTTGTGCTGGGTGCCCTACTCCAGTATTGCCGTGTACGCCTTCACCCAACAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1695756 lncRNA upstream 92493 71079289 ~ 71079520 (+) True G1482962
TU1695755 lncRNA upstream 94306 71077407 ~ 71077707 (+) True G1482961
TU1695753 lncRNA upstream 96444 71075366 ~ 71075569 (+) True G1482959
TU1695598 lncRNA upstream 227990 70851928 ~ 70944023 (+) False slc2a9l1
TU1695666 lncRNA upstream 231279 70940431 ~ 70940734 (+) True G1482873
TU1696601 lncRNA downstream 274663 71447907 ~ 71448238 (+) True G1483721
TU1696618 lncRNA downstream 305224 71478468 ~ 71478743 (+) True G1483735
TU1696606 lncRNA downstream 330171 71503415 ~ 71518363 (+) True slc25a26
TU1696749 lncRNA downstream 479878 71653122 ~ 71655783 (+) False G1483842
TU1696751 lncRNA downstream 479878 71653122 ~ 71655783 (+) True G1483842
XM_036950562.1 mRNA upstream 309886 70855148 ~ 70862127 (+) False slc2a9l1
XM_036950561.1 mRNA upstream 309886 70855159 ~ 70862127 (+) False slc2a9l1
XM_021569612.2 mRNA upstream 309886 70855410 ~ 70862127 (+) False slc2a9l1
XM_036950559.1 mRNA upstream 324623 70809971 ~ 70847390 (+) False LOC110494494
NM_001171901.1 mRNA upstream 370395 70793615 ~ 70801618 (+) True mx
XM_036950570.1 mRNA downstream 276416 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA downstream 276416 71449660 ~ 71518366 (+) False slc25a26
XM_021569629.2 mRNA downstream 497411 71670655 ~ 71678016 (+) False kbtbd8
XM_021567510.2 mRNA downstream 505145 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA downstream 505339 71678583 ~ 71688655 (+) False LOC110493246
TU1695603 other upstream 330783 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 515956 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2172830 68994632 ~ 68999183 (+) True G1480254
TU1692851 other upstream 2188535 68934326 ~ 68983478 (+) False G1480254
TU1692079 other upstream 3046233 68122538 ~ 68125780 (+) True G1479621
TU1696175 other downstream 5269 71178513 ~ 71180429 (+) True G1483346
TU1696516 other downstream 208700 71381944 ~ 71382272 (+) True G1483638
TU1697747 other downstream 1131479 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 1281319 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1871493 73044737 ~ 73045588 (+) True LOC110494525

Expression Profile