RNA id: XM_021569629.2


Basic Information

Item Value
RNA id XM_021569629.2
length 5115
RNA type mRNA
GC content 0.46
exon number 5
gene id kbtbd8
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71670655 ~ 71678016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTGTTTCCGGGGCTCACAGTAGTGACGTTTCACGGTCTGCTTTGAGACGATTTTGGCTAGAAGGGATTCAGCTTTTATCAAATTAACGTCAAAAGTTGAAATGTTTTgcgttttagctaacccttcccataaCATAATTATCCTACGTTAATTATCATAACATGCTGCGTAAATTATCTTAACCTGTTAGTACGAAAAGTATAATCTaacaaaagctgtatcccttctagcCTTAACAGCATTGAGCTTGTAGACCAGTTTGAGAAAGACTGGGGGAGAATGGCTGCCAGTGGAGACGTAGGCAAGCTGTTACAAGTACAGAATGTGACTCCTGCGAACACAACCTACAGTGGGGTTGATGCCGTTCATGCCTGTAACATCCTCCAGCAGCTCAAAGCCTTGTATGATGAAGCACAGCTCACAGACATTGTCGTTGAGGTGGACCATGGCAAGACATTTCCATGTCACCGAAATGTCCTTGCAGCAATCAGCCCTTACTTTAGGTCCATGTTCACCAGTGGCCTTACAGAGAGCAGCCAGAGGGAGGTGCGGCTCATCGGGGTTGAGTCTGAGTCCATGCACCAGGTCCTGGACTATGCCTACACGTCCAGAGTCATGCTGTCCGAGTCCAATGTCCAGGCCCTGTTCACGGCAGCCAGCATCTTCCAGATCCCAGCCCTGCAGGACCAGTGTGCCCTGTTCATGATCAGTCGTCTGGACCCCCAGAACTGCACCGGGGTCTACATGTTCGCAGACGCCTACGGCCACCAGTTGCTGAGGGAGCGCTCCCAGGACTACATACGCAAGAAGTTCCTGTGTGTGGCACGGGAGCAGGAGTTCCTCCAGCTCACCAAGGAGCAGCTGGTGAGCATCCTGAACAACGATGACCTGAACGTGGAGAAGGAAGAGCATGTGTATGAGAGCATTGTGCGCTGGTTGGAGCACGACAGCCCTCGCAGGGAGACCCACCTGGCTGAGGTGTTTTCTCAATGCATCCGACTGCCCCTCCTGGATGACTCTTTTCTCAGCCGCATCCCGGCCCCTTTCGCCTGcgccctctctctgtccaggGAACCTGCCGAAACCAAGGCACGTCTCAACGGCTGCTCTCAGCGCCTGGGCATGACCGCCTCCGAGATGGTCATCTGCTTTGATGCGGCACACAAACACTCAATGAAGAAGCAGACCGTGCCTTGCCTGGACACTGCTGCTGGGAAAGTGTTCAAGCTCTGCAAGCCCCCCAATGACCTGCGGGAGGTGGGCATCCTGGTGTCATCGGAGAACGACATCTTCATCGCTGGGGGCTACCGCCCTAGCAACAGCGAGGTGTCCATCGACCACAGGGCGGAGAGCGACTTCTGGCAATACGAGCATGCAGGGAACCGTTGGCTGGCGCGTTCGCCCATGCTACGGGCCCGGATCGGCTGCAGGCTGGTCCACTGCTGTGGGAAGCTGTACGCCCTGGGGGGCCGTGTGTACGAAGGGGACGGAAGGAATGCACTGAAGTCAGTGGAGTGCTACGATGCCAGGGATAACTGCTGGACTGCCGTCAGCCCCATGCCTGTCGCCATGGAGTTCCACAGCGCTGTGGAGTACAGAGACCACATCTACATCCTCCAAGGTGAGTACTTCTTCTGTTTTGACCCTCGCAAGGACTACTGGGGCCACCTGTCCCCAATGAGTGTACCCCGGAGCCAGGGTCTGGTTGCCTTACACAAGAACTGCATCTATTACATCGCTGGCATCTGCAGGAACCACCAGCGCACCTTCACCATGGAGGTCTACGACATCGAGCAGAACACCTGGGCCCGCAAGAGGGACCTTCCCTTCGACCAGGCCACCAGCCCCTACATCAAGGCCCTGCTCCTCCAGGGCAAGCTGCACCTGTTTGTCCGAGCCACGCAGGTCATGGTGGAGGAACACGTGTTCCGTACCAGCAGGAAGAACTCCCTCTACCAGTATGACGACGAGGCGGATGCTTGGACCAAAGTCTACGAGACGCCTGACCGCCTCTGGGACCTGGGCCGCCATTTTGAATGTGTGGTGGCCAAACTGTACCcgcagtgtcttcagaaagtgcTCTGAGAGGACCTTGGGgaatgggtggcaggtagcctagcagttagaacattgggccagtaactgaaaggttgctggttcaaataccaGAGCCGGCAACGTGAATatctctgtgcccttgagcaaggcacttaaccttaatttGCTCCAGCGGCGCTGTATTGATAAGGCTGGCCCTGTAAATGTCACATTtcactggacctatctggtgtatgtgacaaacaTTTATTGGGTTGAACCCCTCCGGGAGGAGGGAGCGTGAGGTCCTGCTTGTCTTGTGCCTGATGCTGTCCTGTTTTGCACCACAAGGGCAGTTAAGAGTTTAGTCTTAAAGCATTAACATATAAGGTTTAACACGATCAAATGGGGGTGCTTTCAAAAGATTGCAGTATTTGTGTTTTTTTCTTCCACTCAGCACCAAATACCCAACCTGGTGCTTGTTTTACAGTCCAATGAATTATAAGTGCAATTATTATGTTTGCTTGTTGTTGAGCCATTTTGTTCCATTTAATCTTAAAAGCATATATAGGTTAAAAATTTTACAATTGATTGACATGCAGTTGATGGATCAGATGAAGTACCCTCTAGTTAGCATAAAGTGaaaattctatatatatatataaatcattaattttatatatatatattcatacggGTAAGATGAGCAGTGTTGCTCATTGGTAGGTTGTTAGCTCAGATTGAGGATTTTTGTGTCTGACTTTTGTATTGATTTGAATGCTGATTGCTCCCTACAGCAAGTTCGTCTTTGtggaagtgtttattagttgtgtaTGAAGTGTGCTAGTGATTTAGATCAATTTAGTATTATTGCCATGTGTGATCGGTATGATGCTATTTTATGAAATGAATAATTTGCTTTCAAGAGATGGCTTAAGTTGTTAACCAATGTGCTATTTGGCTTCGTTGCAGTTGGATTTATACTTTTTGAATTCGTAGACTAATGCAATGGACTCTTAGAACTGGCATCCATTTTGTTGCAACGACTTTCACATGCCAAGACAACTTAAGAGAAGTTAGACGATTCACTCTCCACATTGGAGAAACGAGCAGGGCGTCAGATGTGTGGTTGGCCAAGATAAGTGCGACATTTCGAACCAGGCAACAGTTTGCTTTGATAGCAACTTAAGAGAAGTCAGATAAGGAATGAAGGGACATGGTTCAGGCTGATGCATTGATTTGGCCAAAGTGTGGGCAGCTCGCTGCAGAATAGTCTTTTCTGGGGGGGTTTTCAGCATGTCTGGTATTCATTACAATCTGCTTTAAAAAGTGTTTGGGTTAACCTACCTCTTAAATGCCAAAATGCATTTAAGAACTTGTTTTGTTTCATCTGAAAAGTTGATAAAGTTTCAATTAGCTGTAACTAAGGAAACTTTGACACAATTAGGTAGGGCTGGGATGATACCAGTATTGTGATACTCGCTATTAttatggcaaggaaacaaaacatgaagcagatttaacttctttaggataACAGTTATAATGTTGGAAACAGACCTCATTATGTTAGCCGGAGTcacctttatttattttccaaactatagcacaatattttacatacagaagGTTTTTAAAGGGCCAAAGAGGGtggtctgcttcgtgttttcatttttgccattgataaaatattGCAATGCtggtatcgtcacagccctaCATTTAGGTTTACGCTAGTTGAAGGGgattacattttgttttcaagCTTCATTTGGGTACTTACCTTTGCTCGTTGAAATGTTTCAATATTTGCCTGTGTGGCTGGCTGCTGTACAGTAGTTGTCAGAGGAGGAGTAAAGTAGAGATTGTTGGTGTGTAATTTAGTCCAGATCCCAAGGGGGATGTCATTGTGCCTATGGGTGGGTGGGGGCATCCAGATAGTAGTCCTGTGTGTTTTAGCCTGGCGAGGTCTTATTTATCATTGCACTGAATCACTCTTCAACGGTCCGTCACTGCAAACTTGACCAAGCAGCACCCACCTGGACAGAGCATTACCACAGAGAGTGCTTCTTTTATACATGAATCCATCTGTATGCTATGACATTGAGAGAAACTAACTATTGGTGCTGCTTTTTTGATGATCTTGTATATATTAAATAAGTAACAGCAATTGACTGATGTTCCCTATGGAACTGTAACAAATTCAATGACGTCAATTTCCTCATGCAGGTTCCTGTATCATCTTTGCACTACATATGATCATTTATTTGATCTCATATTTCAAGCATTTCCCCAAAATATATCATTGACCACAAAGCAATCTTGGGAAATGCAGTTCTGTCTTCACAGAATTTCAACTGGAGAGTAGTATGAAAAGGTTCTGTTTGTAGCTGCTGACATGAACTTTTGTAAAGAAAAATACTGCACATCACTTGGCACTGGTTTGATCTGGCCAGAGCAGTGCCCTCCATGGGCGAGGAAGGAGAAAAGGGGTTTCCTCAAATGCCTAAAAACTCACGTGGGAACCAGGAATGGACAACTCAGGATTTCTATtgataaacagtactgtatttaaATATCTTGTTTCATGTGTAATATACGTTTGCTGTACTTGCACAgttttttacaactttttttcttTTATAACTTGAAAAGTAGAAATGTTATTTTCAATGGCTATTTTTCCATTTTCTATGTTTAGTTATAGTAGAGTGATTAATGTAAATATTCTCAGTAGTTTTGCTTTACCAGAACTTCACAATAAGCAGATCTGTAACTCCAATGTTACATTATCTCCAACACATCAGTTTTGTGAAATACTTCAAGTGTACAACGAATCAGCCAGTCAATGTGCTTTTTGTGCAAAAGATATAGTTGGCCTTGTGTGGCCATGCCCAAGCTCATTCAAGCCCTGTATGTATGCATCCTGCATGGATGGCTACTACCAGTAGAATCTTACTGCTTTTCTTTTTGTTTGCTGCTTTGTCTGTGTAGTTTGGGGAATAGTGGTGGTTGAGCTCAACTGTGAAATTCACATTGCACATAATTTGAGAATAAAATGACAAGTGAAACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1696749 lncRNA upstream 14872 71653122 ~ 71655783 (+) False G1483842
TU1696751 lncRNA upstream 14872 71653122 ~ 71655783 (+) True G1483842
TU1696606 lncRNA upstream 152292 71503415 ~ 71518363 (+) True slc25a26
TU1696618 lncRNA upstream 191912 71478468 ~ 71478743 (+) True G1483735
TU1696601 lncRNA upstream 222417 71447907 ~ 71448238 (+) True G1483721
TU1696909 lncRNA downstream 13906 71691922 ~ 71692164 (+) True G1483989
TU1696975 lncRNA downstream 92791 71770807 ~ 71776235 (+) True G1484054
TU1697019 lncRNA downstream 147414 71825430 ~ 71827175 (+) True G1484093
TU1697030 lncRNA downstream 154761 71832777 ~ 71833688 (+) True G1484102
TU1697185 lncRNA downstream 208065 71886081 ~ 71886293 (+) True G1484247
XM_036950570.1 mRNA upstream 152289 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA upstream 152289 71449660 ~ 71518366 (+) False slc25a26
LOC110494500 mRNA upstream 497411 71172013 ~ 71173244 (+) True LOC110494500
XM_036950562.1 mRNA upstream 808528 70855148 ~ 70862127 (+) False slc2a9l1
XM_036950561.1 mRNA upstream 808528 70855159 ~ 70862127 (+) False slc2a9l1
XM_021567510.2 mRNA downstream 373 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA downstream 567 71678583 ~ 71688655 (+) False LOC110493246
XM_036950573.1 mRNA downstream 567 71678583 ~ 71688655 (+) True LOC110493246
XR_005037244.1 mRNA downstream 24629 71702645 ~ 71702701 (+) True LOC118940657
XR_005037062.1 mRNA downstream 301884 71979900 ~ 72212154 (+) False LOC110494505
TU1696516 other upstream 288383 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 490226 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 829425 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1014598 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2671472 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 626707 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 776547 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1366721 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 1444810 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1603244 73281260 ~ 73282019 (+) True G1485819

Expression Profile