RNA id: XM_036950572.1


Basic Information

Item Value
RNA id XM_036950572.1
length 2201
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC110493246
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71678389 ~ 71688655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAATGTAAAATATTTTGACACGCTTCAACTTtctgttgtgtgtatgtattccAAGTCGGATATCCACGTGTACAAACCACATTTGAGTCTTCGTTTGCTGAGGGTAGCACAAATCATCATTAGGCTACTTCTGAAATTACATTCTTAGAACCTAAACTAAAGTGCCCTCGTTCGTTTACGTGCTGCGGTTTTGCGTCTCATCAGGTAGACTGATGCAACTTCCATATCCCCCTGAGACACGAAAAAAACAAGTTTGGGATTTTTTTCACATAACATAAGTGTTGGAGGTATAAAAAAAAAGTGAACAATTATTTTATTAAACATGTCCCCTGCACCAGCATCTATTCTGCGGGACACCCCTCCGGacgggggctggggctgggccgtGGTGTTTGGGGCCTTCATCTCTATCGGCTTCTCGTATGCCTTCCCCAAAGCCCTCACTGTCTTCTTCAAAGACATCCAGCTGATCTTCGGTGCCTCCTACAGCCAGATTGCATGGATTTCTTCCATCATGCTGGCAGCAATGTATGCCGGTGGACCTATCAGCAGTATTCTGGTCAATCGCTATGGAAGCCGGCCTGTGGTCATAGCTGGTGGAGTGATGTGTGGCATTGGTATGGTGACTGCTTCTTTTGGCAATACCATTACGCATTTGTACATATGCGTAGGAGTCGTTGGAGGATTTGGTCTTTCTTTTAACCTCCAGCCATCCGTCACCATCATTGGGAAGTACTTCCAGGTCAAGAGGCCGTTAGCTAATGGGCTGGCCATGGCAGGAAGtccagtcttcctctgtaccttaGCACCTATCAACCAGTTCCTGTTTAACCAATTTGGCTGGAGGGGCAGTTTCTTCATCCTGGGAGCTCTGCTGCTCAACTGCTGTGTTGCCGGCTCTCTCATGAGGCCCATTTGTCCAAAGCCAACTGGAGGCCAACTCACGCAGACAAACGGAACCCCAAAGAAACCTACCACTCACCGGTCTGAGGCCCAGGTGAATGGACACAACACACAGTTGGAGAAAGGCTGTTTGGACAGCTTCAACAAGTTTCTGGACCTCTCACTCTTCAAACACAGGGGCTTCCTGATCTACATCGTAGGGAACGCGGTGATGTTCTTTGGTTTCTTCGCCCCTGTAGTGTTCCTGGCCCCTTACGCCCTGAGCCATGGCTTCGACGAGTATTCCTCCGCCTTCCTCTTGTCCATCATGGGCTTCGTAGACATGTTTGCCAGGCCGTTGACAGGGCTGATGGCTAACACTAAGTGGATCAGGCCCAGGATACAGTACTTCTTCAGCTTTGCCATCATCTATAATGGTTTATGCCACCTGCTGTGTCCCTTGGCCAGTGGGTATGGGGGGCTGGCCGCCTACTCAGTGTTCTTTGGCATAGCATTTGGAATGGTGTGTGCCCTGCTGTTTGAGACGCTCATGGACCTGGTGGGGCCTCAGCGGTTCTCCAGTGCAGTGGGACTGGCCACCATCATAGAGTGCTGCCCCGTACTCCTGGGACCACCTATTGGAGgaGCCTTGGTGGACACCTTTGGTGACTACAAGTACCTGTACCTCATGTGTGGAGCGGTGATGGTGTTCGCAGGACTCTTCCTCTTTGTTATGAATATCTACAACTACAGGATGCTGGAGCGGGAGAGGCGGCAGGAGGAGGGACAGGTAGAGGAGGGCTGTGAGAGCCAGGAGCAGGACCAGGAGCAGGGCCTGGGgctgagggagaggggagagacctCCTCAGAGGAGCAAggagaggcagggaaggaggctAAGAAGCAACATATCCCCTAGGGAGACGAATCAGAAGCGGAAGAGACTAAATTAAGCCATGCATGATACCACTGTTTACAAGTACACTCTCATATATTGATGCCAGTATATCAGTATATAGGCCTACCcaatactgtatatagtccaccccccccccccacccccccccccccccccccccggtattGAAATTTGGTAGATTCTCTGAAAAATATTAATCCCTAGTACAGAGCTCCAGATGCTGTTTAAATCTCCCTTTTCCACTGAGTGCCACCTAGGTGACTCCAGCGTTGCTCCCCTATTTTGTGGCTGCTTCTGAAGCTGAAAGCTTAattaacacacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1696878 lncRNA upstream 571 71676912 ~ 71678012 (+) True kbtbd8
TU1696749 lncRNA upstream 22800 71653122 ~ 71655783 (+) False G1483842
TU1696751 lncRNA upstream 22800 71653122 ~ 71655783 (+) True G1483842
TU1696606 lncRNA upstream 160220 71503415 ~ 71518363 (+) True slc25a26
TU1696618 lncRNA upstream 199840 71478468 ~ 71478743 (+) True G1483735
TU1696909 lncRNA downstream 3267 71691922 ~ 71692164 (+) True G1483989
TU1696975 lncRNA downstream 82152 71770807 ~ 71776235 (+) True G1484054
TU1697019 lncRNA downstream 136775 71825430 ~ 71827175 (+) True G1484093
TU1697030 lncRNA downstream 144122 71832777 ~ 71833688 (+) True G1484102
TU1697185 lncRNA downstream 197426 71886081 ~ 71886293 (+) True G1484247
XM_021569629.2 mRNA upstream 567 71670655 ~ 71678016 (+) False kbtbd8
XM_036950570.1 mRNA upstream 160217 71449660 ~ 71518366 (+) False slc25a26
XM_036950571.1 mRNA upstream 160217 71449660 ~ 71518366 (+) False slc25a26
LOC110494500 mRNA upstream 505339 71172013 ~ 71173244 (+) True LOC110494500
XM_021569612.2 mRNA upstream 816456 70855410 ~ 70862127 (+) False slc2a9l1
XR_005037244.1 mRNA downstream 13990 71702645 ~ 71702701 (+) True LOC118940657
XR_005037062.1 mRNA downstream 291245 71979900 ~ 72212154 (+) False LOC110494505
XM_021569633.2 mRNA downstream 291245 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA downstream 291245 71979900 ~ 72220074 (+) False LOC110494505
XM_036950582.1 mRNA downstream 764704 72453359 ~ 72523767 (+) False LOC110494508
TU1696516 other upstream 296311 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 498154 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 837353 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1022526 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2679400 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 616068 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 765908 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 1356082 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 1434171 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1592605 73281260 ~ 73282019 (+) True G1485819

Expression Profile