RNA id: XR_005037062.1


Basic Information

Item Value
RNA id XR_005037062.1
length 1777
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110494505
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 71979900 ~ 72221849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGTGCTTTGGAAAGAGGGCTGAACCTCACACACATAATCAGCGCAGCTTCTCAATGGGGGGACGGAGCCAAGAGGAGACAGAACTGTCGTTCCGCTGGAGCTGATCTCAGTCTGTGTGTGAGAAGTGAGGAGGCAAATTAACGTTCTGCCGTCACGAGAGGGATTTTACCTTCACAGTACTGATCTAAAGGTGATATGAGCAGCCTTCCATCTTGTAAACACTGACTAGTTTGTAACAGCGTGTCATTCCTGTGAGCTGAGGTGGTTTCTGGTGACCGCATTCCCAGGATttcagacggacagagagagtcGAGGGGGGCAAGCGGACGAGGCAGAAACAACAGAGCTTCTCCCCCTCTTATCCTGCAGCGTTGTTCTTCTTTACACCTGGAACTTTGTTGGGAATCCCTGGCGTTCAGACTATGGATGGATTTAAGACAGCATTGTGAGTCTGTTGAACAGACGGTGATACTGACAGCAGGGCACCCTTTCTTTTGACCAGACAGACCACTCAGCCACCCTCCCAGTCTGCCCTGCCATGTCCTTGTTCCTGGGCCTGTGGATTAGCCTTGGCTTCCTGCTGCTGTGCCAGGCCACGCTGTACGAGACCCTCCAGCAGCACCACGTGCCCCGGCCCGGACGCAATGCCATCCAGATCCTGGaAGGAGGGACGTGTGAGGTGATCGCAGCCCACCGGTGCTGTAATAAGAACCGTATCGAGGAGCGCTCCCAGACCGTCAAGTGCTCCTGTCTACCGGGGAAAGTGGCCGGGACGACACGCAACAAACCCTCTTGTGTGGACGCATCCATTGTGATTGGGAAGTGGTGGTGTGAGATGGAGCCCTgtctggagggagaggagtgtaAGACTCTGCCTGATAACTCTGGATGGATGTGCTCCTCTGGGAACAAGATCAAGACCACAAGGAACACTGCGCCATACTCACCTTTTTAGCTCTGGAAGCAAAATGCAGAGGATGCTTCAACAGAAACTGAGCTGCATTCTTGCTTCTGTAAAGaGAGGGAGCCCTGCTTGCCTGTTCTGTATCAGCATCAGACAAGGCAGGCCTTTTGTATGAGGAAGGGAAGTGGGGAGAGACCCCACCAAAACACAAGCCCAGCATAGAGCCACATTACCTGCTCCACTGGCTAAATAGATCAATCCATTTCTGCTCCCACCATACAATTATGTTGTTGACAATTACAAGTAAAAAGGAGAGAGCAAAAGAAAGTGAAATGAGAATTCTCATCATTCTGCCTACCTGCCCCTTTTGTTAAAATTATCTAGTTATTTGAAGCCTTCAATATTATCAAGAATCCCTACCAGACCAGATAGTTATAAGTCCATTAGCCCAGGACTTTGGGAGTTTCCTAGCTGTTGCCTCAGTATTCAGATTCAGTATTTACATTGCTGTTTCAAGAGCCACATGTTGTCTATTAGAAGTAACAGAAGGCACCTTTTCGAGCCAGTCACAACAGCAGGATATATCCCATCTGGGAGGCTTGATCAGAGCAAAGTTACCTGCCAGCAGATGCATCACCATCAAATGTGTTGAATGGGAAGGGAAATCATAAAACAATCAATCGGAAAACACTCCACACAAGAAATGATCATCACCAAGCACTCATGTTTTCCACGTCCCATATttgtttggtaacactttacatgaaCTATCCATCCACATGGTTCATGTAATGTGAACGGTACTACTTTCTTCTACTCTTTTTGTTCTCTACCCATTGTCAATGTCACATTAAATTGATCTTgatatatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697243 lncRNA upstream 25944 71949974 ~ 71953956 (+) True G1484297
TU1697240 lncRNA upstream 32589 71947022 ~ 71947311 (+) True G1484294
TU1697190 lncRNA upstream 89948 71889691 ~ 71889952 (+) True G1484252
TU1697185 lncRNA upstream 93607 71886081 ~ 71886293 (+) True G1484247
TU1697030 lncRNA upstream 146212 71832777 ~ 71833688 (+) True G1484102
TU1697668 lncRNA downstream 13016 72225170 ~ 72225497 (+) True G1484705
TU1697673 lncRNA downstream 15255 72227409 ~ 72227627 (+) True G1484710
TU1697727 lncRNA downstream 55223 72267377 ~ 72267617 (+) True G1484762
TU1697733 lncRNA downstream 59638 72271792 ~ 72272615 (+) True G1484768
TU1697745 lncRNA downstream 88200 72300354 ~ 72300666 (+) True G1484780
XR_005037244.1 mRNA upstream 277199 71702645 ~ 71702701 (+) True LOC118940657
XM_021567510.2 mRNA upstream 291245 71678389 ~ 71688655 (+) False LOC110493246
XM_036950572.1 mRNA upstream 291245 71678583 ~ 71688655 (+) False LOC110493246
XM_036950573.1 mRNA upstream 291245 71678583 ~ 71688655 (+) True LOC110493246
XM_021569629.2 mRNA upstream 301884 71670655 ~ 71678016 (+) False kbtbd8
XM_036950582.1 mRNA downstream 241205 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA downstream 241208 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA downstream 241208 72453362 ~ 72523767 (+) True LOC110494508
XM_021569639.2 mRNA downstream 334998 72547152 ~ 72585158 (+) True LOC110494510
XM_021569640.2 mRNA downstream 374634 72586788 ~ 72600870 (+) False LOC110494511
TU1696516 other upstream 597628 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 799471 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1138670 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1323843 70650943 ~ 70656057 (+) True nampt2
TU1692848 other upstream 2980717 68994632 ~ 68999183 (+) True G1480254
TU1697747 other downstream 92569 72304723 ~ 72305412 (+) True G1484782
TU1697884 other downstream 242409 72454563 ~ 72454924 (+) True G1484897
TU1698249 other downstream 832583 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 910672 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 1069106 73281260 ~ 73282019 (+) True G1485819

Expression Profile