RNA id: XM_036950582.1


Basic Information

Item Value
RNA id XM_036950582.1
length 6005
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110494508
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72453359 ~ 72523767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTCACGAGCGCACCAGTCGCCCATCGGATGCAAGCTATGTGGACAAACAGCTGCTACCTTGACGGAGAAATCCTCGACAAGTAGCGAACACTTGGATAAACAGCGAGAGAAGATTTACAGAAGCGACTCCAAGTTCCCCAACCAAAGATCCGCAATCACCTAACGATCAAGGTACAGTCCAAACTGATGTCAAAGCCTTGTCCCTCTACCCGGGGTCCCAAACCTCCCATCGCCCCAAAGCCCAGACCCTCCTTATCTGAGACAGAGCAAGAGGAGGAGCAGTGCCCCCCTCACGGTCTGAGCAATGGAGACCTgacctcctcagaggaggaaccTGAGGACCCTCAGGAGGTGGCAGAGGACCACGTAACTCAccccacagaacacaaccaggAGGAAGCAGAACCAGAAGAAAACCTCAATGACATCAGAGATGATGAaggggggagtgaacaggaggagaagggagatgaggtagagagagagggagaggcgttGACCGATGCAGCCCCATTGGATAACACTAGTGCTACTGACACTCACGTTGCAGTAGAGGAGGAAAACTCTAAAGAAACAGATGACTTGAACCTTGAGAGTGACAGTAATGACACATCTGTGGACCCTGAAGATGTTTTGATGCCGTGTCTCtcagagtgtgagagagggaatGAAGAAGCAGAGTGTGTCAAAGAGTGGAGGGAGGAAGAAAATATTTTATCTGAAGAGACTGAAACAGCCGAGGAGCCTACTGGATGTCCAGAAGAAGATGCAGAAGAACCAGACACAGAGGATTATGATCATGGGAACTTCCCTAGTCAACCTGCCGCAGACACTAACAGTGGGCTTGAAGATGAGGACAGATCCCCTGGTGGATATTTGCAGTGCAAGGTACCCACTGATGAGGCTGAGGAAGAAGCAGAGGTTCTCTCACTGGGAGCAcactgctgtacacacacacccgtCTGTGAAGACTATCCCTACGACGTGATTGGCCCTTCAGATGAGCCTGTTTACACATGTGACGCTGGTGAGCCCGGTGACACAGGCGTGTGGCAGCCCGAGCGTGCCACCAAGGACCCCTCTGGGCGTTTCCGTTTCTCTGGCAGCACTGAGGATATGTTTGGGCCTTACTCTGTCATTGAGGCGGTGCCTGCTGACAGGATTCGCACCGCTGAGCCTGATGTGAATCACGACGATATATGCTGTGGTGACAAACCACACACTCCAAAGGAGATGGACACAGCAGGCACCTTTAACCAAGAGCCTTATTATGTGTCATCAGACGACGTGGCAGAGCTAGAGGATAAACAGAAACTCCCAGAAGAGTGTGAGGTCCAGGACAGTCCTGAGCAATCCACCCAAGACAGAGAAACAGCTAAGGAGGATATGGATGAATACGCAGACATCGATGACTCCCTCTGCCCAGAGGGCCATGACTTTCAGCATCTGGAGGGTGCATCATCAGAGGACTATGTGGAGATTGGGGACGATGATGAGACGGATGACACCGAGAAGAAGCAGATCAGAGGCaggagtatgagagagagaacagccaagCGTGAGCAGGCTTTCTCCAGCCAGCGGAACAGCTGCCAGCCCCGTCTCAGGCTGTGTAACATCACAGTGCCAGCAGACCTGGACCGGACACGGACCCCAGAGCTCACCAACAGGGTGGTGTTCGCCCACACCACAGAGGCCTTCGAGGAGGACATTGAGGAGCTGGACGGCCACATCGTGCCTTATTACGAGGACTCCAACTCAGATAGTGAGGAGCACATCTATGAGGAGGCTGGCTTTGACTCTGAGGGGGAGAACTTTATCTCTAAGAGCATTGTGACGCGGTCACGCTCCTACTCTGGGAAAGTTCCGGGTTATGTCCCTGAGACGGTTCCTGAGGAGACATCAGAGTACCAGAGTACTCATgactactgtactgtggccttaaACCAAAATGGAGAACCTCTGGTACGTCCTGAGCAGCCTGAGATCAACAGACTCATCCCCTCTCTGAAGCCACGCCGCTTCCTACTATACCCACGCTCATACTCCGTAGAGGGTCAAGAACTGTCATCAGGCGCTCACACAGAGGCTGACCAATCGCTGAAAGAGGAAGACAGGATGAAAAGGACAGATGACACCCTCTATCTGCCATGTGTTGTCACTTCTTCAGGAAGCATTTCTCAACAGAGCCACCAGTCATCCAGCGGCATTTCCACGCCAacttctctggtggacattccaccTCCCTTTGAATTGGCTTACATCACCAAAAGACCCGTCACTAAAAGCTCCCCATCCCTCCTGATCAGCGTCTCTCCTGAGTCCACAGACAACAAGCCCAAGAAGCAGAAGTCCTCATTCAAGCGCTTCCTGGCCTTGAAGTTCAAGAGGAAAATGGACACTAAAGGCTTTGGTGATGGTAGCAGCCGCTCCTCGCGCTCCTCCTCTGAGTCCAGCCACCACGGGCCAACAAGAATCCTGGACCTAGAGCGCAGGAGCACTGGCTCCcctcagccccagtcccagtctcgCATGGTGAAGCCCCAGCAGCGTCCTCCAGACCTGCCCTCAACCTTCCTGCCCTACAAAGATCACAGGAAAGGAGACCCTAAAGCCTACGGAAGCAGGGGCGTGTCCAGGGTAGAGTCCTTCGAGGAGCGCTCCCGTCGCCCCCTCATGCCCCTCCCCCTGACCAAACCCCGCTCTATCTCCTTCCCCAATGCAGACACATCAGACTATGAGAACATCCCAGCTATGAGCTCTGACTATGAGAACATCCAGATCCTCCCTGGAGGGAGACCCACCAGATCCATGACTGTCACAGAGTTCTTTGAGGACCCCAACCGCATGGTGGCCCCCTCTAATGACAACGATGGCTATGTGGATATGAACAGCTTCCCTGGGATCGACAGCAAACCCCAGTCACCTGAGCAGGAGCCTGAAAGTGCCTACACTGAGCCTTTCCCAGTGAACCATACTCCAGCAGGGCTCTCAGCTGAGGAGGACCATGGACGTacctcagaggaggaggaggagggaggagtggagcatGGCTACGACAAACAGATTGATGGGCGATCCAGAGCCTTCTACGTCGCCAAAGAGCTGGTGGATTCTGAGAGACTACATGTAAAGGCCCTCAAGCTCCTTCAAGAGGACTTCAGGGCAGCAGTGTTGGAGGCGGTGGGGGAGGATGGGGAACGTGTGGTGGAGGAACAGAGGCTGGGGGAGATACTGGGCACGCTCCCTGAGGTCTACATACTCCACAGCAACATCCTCACCGAGCTGGATGCACGCATCAGACAGTGGGAGGAGAGCCAGCAGGTGGTGGATGTGATCCTGTCTCGTCAGGAGGAGTTTGCTGTGTTCGCTACCTATATCTCTAAGTACGACCGCAGCATGTCCCTACTGGCAGAGAGCTGTAAACTCAACCCTGCCTTCCATGACATTGTCAAGCAGTTTGAGAAGCAGGGCCCAGATGGACCTCAGTTCCCACTGCGGCATCAGCTGCTGCAGGTCATTGTGAGAGTCCTCCAGTACCGCATGCTGCTCACAGATTACTTAAACAACCTTTCCCCTGATTCTAAAGAATATGAGGATACACAAGCTGCCTTAGTAATCGTGTCAGAGGTGGCAGACCAGGCTAATGACAATCTCAAGCAAGggGAGAACTTGCTGCGGCTGGTCCACATTGAGTACAGTGTCAGAGGCAAGAGAGATCTACTCAAGCCAGGAAGGGTGTTTGTGAAGGAAGGCACACTAAGGAAAGTGTCGAGGAAAAGCAGACAGCCCAGACACCTGTTTCTGATGAATGACGTGATGCTGTACACCTACCCTCAGCAGGATGGTAAATACAGGCTGAAGAACACTCTCTATCTGTCTGGGATGAAGGTCAGTATACCTGTCATAGACAACGTGCTCAATGCCCTGAGGATCGAGGTGTCTGACGTCACCATCACCTTGTCAGCCAGCTCCTGTGGAGAGAGGGACGACTGGTTTCACACACTGAGTCGGGCCATAGCAGACCATGCTGCAGGCCTGTGTACTTTTGGTGGCCCCTGCAGTGAGGGACGTGAGAAGCTGTGGATGGCCCTAGGGGAGGCAGCTCCAGTGCTGGTGCCCGTGTCTCATGTGATGATGTGTATGAACTGTACCTCTGACTTCAGCATGACCCTGAGACGCCACCACTGCAACGCCTGTGGGAAGGTTGTGTGTCGTGCCTGCTCCAGGAACAGGTACCCTCTGAAGTACCTCAAAGACAGAATGGCCAAAGTGTGTGACCACTGCTACGCTGAGCTCAGGAAGATAGGTGTCAGTATCTCAGGGGCGTGTGGTAACTCCAGCCCCTGCACCCACCGGGCCAGTCGGCCCCTCTCAGCTGTGTTCCAGAGCCTACAGCCCCCAAGCCTGTGGAGAAGCCGGAAGAGCACCTCCCCTCTCAACCAGGTGGCATTGAGGGCTGAGGACTCGGCCATGACTGGCAGCCTGCAACGGCGTAAGAAGAGCAAGAGGAAGTGGAAGAGGCTGTGGTTCATCCTCAAAGACAAGGTGCTCTACACCTTCACAGCACGTGAGGACAAGGTGGCATGTGAGAGTCTGCCCCTGCAGGGTTTCACAGTGAAGCTGACAGAGAGGCCAGAGGGTGAGGAGAGCTTCAACGTGTTTCAGCTCTACCACAAGAAGACTCTATACTACACCTTTAGAGCAGATGACCAGCACACTGCCCGCAGGTGGGTCAATGCCATGGAGGAAGCCACAGTGTTATAACATCTGCCTGTCTGCACAGACTGACCCTGCAGTGCATCACCTACCTACCTACGCTCTCTGTCCTGGTTTACAGCTGTCCCTCACAATGCCTAAATGGAATATCTATGAAAACTTATTTTCTCTTGAAGGACTTTGAATATCATTCTTATAATCCATCCCTTAATGCACTGGACCAATTCTCACTCTGGAAGAATACACGTCTCTGTGCAAGAGCATCTTTGACATGGATGCCATCTACAGGCAGAAAGAAGATCATGCAGACTCTGTGTGGGGCAAACATCCAAGCGTGAGGTTACTGCTTGGGAGTCTCTAAGGTGAAAACCTCTCAGATGAGTATACTGCATGCCACAACATGCCACAAATTCCGCTCCTGTGTCGGAAAGCTCATAGACAATGTGTTTTTACAACTTTTTCCATTGAAAGTCTCCAGTGCCATGTACATTCACAGACTTACCTTTACTTTCTGACTCTCCTTTTCTACCATGGATGTGTATGTACATAGAACAACTTGGGAGGGGTTTTGTTTTTGATATCATAGGCTTTTTGATGCTGTTTAAACAATACCAAGTTAATATGAACAGCTTATGAGAGTCATGTCATGTTTGGAATATATAGTGTAATATTCAATTCCCATATTTTGAAGTGAGATATAATAATTATTTGTACAGAAATGTTATTACATGATGTTACATCATGCCCAATGTATTTTCTGTACTCTATGTAAACGTACTTATTTTACACCGTAGGTTTACACCTGTAATAACAATgacagaatgtgaaatgttacagACAGTATTAGTATTATTCAACAAAACATCATTTTGAAGTATATTTCATAGCTGAATGTAtagtttttaaacatttttaaaagggTGACTACATTTTTATGGGCCAATAGTCTCCACTTGAATGCAGTGTGTTATGGCTGAAAGAATGTGCCTGACGTGACGTTATTATCCTTATTATCATTCATTCAAATTATAATTCATCCGttttggggagtagtgaactgcATGTAGTTTAACTAGTAATTTAACTatattttgcagtagcttggtggtagttgaactaattAAAATACCTGACAGAAAACAGATTTAACATTCAGTTGAtgttttctatttcctgtccagtcatatggtctatcacatgagatgttttctatttcctgtccagtcatatggtctatcacatgagatgttttctatttcctgtccagtcatatggtctatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697870 lncRNA upstream 8636 72444508 ~ 72444723 (+) True G1484886
TU1697856 lncRNA upstream 27799 72425316 ~ 72425560 (+) True G1484872
TU1697839 lncRNA upstream 48152 72404800 ~ 72405207 (+) True G1484855
TU1697812 lncRNA upstream 80636 72371865 ~ 72372723 (+) False G1484829
TU1697813 lncRNA upstream 80636 72371902 ~ 72372723 (+) True G1484829
TU1697936 lncRNA downstream 20394 72544161 ~ 72544443 (+) True G1484943
TU1697993 lncRNA downstream 136239 72660006 ~ 72675667 (+) True G1484985
TU1698014 lncRNA downstream 165877 72689644 ~ 72693477 (+) True G1485006
TU1698076 lncRNA downstream 266304 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA downstream 266304 72790071 ~ 72790719 (+) False G1485065
XM_021569633.2 mRNA upstream 233285 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA upstream 233285 71979900 ~ 72220074 (+) False LOC110494505
XR_005037062.1 mRNA upstream 241205 71979900 ~ 72212154 (+) False LOC110494505
XR_005037244.1 mRNA upstream 750658 71702645 ~ 71702701 (+) True LOC118940657
XM_021567510.2 mRNA upstream 764704 71678389 ~ 71688655 (+) False LOC110493246
XM_021569639.2 mRNA downstream 23385 72547152 ~ 72585158 (+) True LOC110494510
XM_021569640.2 mRNA downstream 63021 72586788 ~ 72600870 (+) False LOC110494511
XM_021569641.2 mRNA downstream 63021 72586788 ~ 72600870 (+) False LOC110494511
XR_005037065.1 mRNA downstream 63021 72586788 ~ 72621297 (+) True LOC110494511
XM_036950583.1 mRNA downstream 77558 72601325 ~ 72612798 (+) False LOC110494512
TU1697747 other upstream 147947 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1071087 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1272930 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1612129 70839620 ~ 70841230 (+) True LOC110494494
TU1695519 other upstream 1797302 70650943 ~ 70656057 (+) True nampt2
TU1698249 other downstream 520970 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 599059 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 757493 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1455123 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1864769 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile