RNA id: XM_021569639.2


Basic Information

Item Value
RNA id XM_021569639.2
length 5085
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110494510
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72547152 ~ 72585158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACGACGTCACCACCACTGCACTCCATAGCTGACAGGCTGCGAGAGAGCTGCGTGCGAATGCTTCCTTAAACACGCTGAAGATTCCCCGTGTAGAATACAAACCAGGGCAGAGCATAATAAGTCAAAGCAAACTTGATCGGGACCCTTTTAAACGCTTTATAAAGGAGGCTGCTGGATGAGTGGTCACCATGTCTCCCTTCTTACGCATAGCCTTTAATGCGTTTGATGTGGGCGTCTTGCCACCCCTGACTGACGCTCCCTTCTGTGCAATTAAGATGAAGGAGTCCCTCAGCACTGatcggGGGAAGACCCTAGTCCAGAGGAAACCCACGATGTACCCTGCCTGGAAGTCCACTTTCGATGCCCACATCTACGAGGGCCGTGTCCTCCAAGTGGTTCTGATGAAGACCGCAGAGGAGCCATTGGCCGAGGCCACGGTGGGCGTGTCCGTACTGGCTGAGCGCTGTAAAAAGGGCAACGGCTGTGCTGAATTCTGGGTAGACCTGCAGCCTTCTGGGAAGGTTCAGATGGTCGTCCAGTTCTTTGTGGAGGACACAGACACAGCAGTGTTTAAGTCGAACGTGAAGGGGCGTGAAGAGGAGGATGGGGCGATGACACTGACCCGAAGGAGAGGAGCCATGAAACAGGCCAAGGTCCATTTCATCAAGAACCATGAGTTCACAGCCACTTTCTTCGGACAGCCCACCTTCTGCTCTGTCTGCCGGGAGTTTGTCTGGGGATTCAACAAGCAAGGCTACAAGTGCAGACAATGCAACGCCGCCATCCACAAGAAATGTATTGACAAAATCATCGGGAGGTGCACAGGAACAGCAGCCAACAGCAGAGAGACTATGTTCCAGAAGGAGCGTTTTAAGATCGACATGCCACATCGCTTTAAGATCCACAACTACATGAGCCCTACCTTCTGTGACCACTGTGGCAGTATGCTGTGGGGAATGGTCAAGCAGGGCCTCAAGTGTGAAGACTGTGGCATGAACTCCCATCACAAATGTGAGAAGAAAGTGGGAAATCTCTGTGGAATCAACCAGAAACTCCTGGCTGAGGCCCTCAACCAAGTTAGCcaaAAATCCACAAGACGGTCTGAATCCAGCAACTCTGAGTCAACGGACATTGGAATCTACCAGGACTTCAACAAAAGCCCAGGAGCGGACCCTAGTGAAGGCTATGAGAAGCTGTGGGAGGGAGGTAAGGGCCCTGCCCCAGCCAGCATCACCCCCAAGACCCGCCTCACCATTGACAGCTTTGTGTTCCACAAGGTGCTGGGCAAGGGCAGCTTTGGCAAGGTCCTGCTGGCTGAGCTGAGGGGGCGAGGACAGTACTTTGCTGTGAAGGCCCTGAAGAAAGACGTGGTTCTGATGGATGATGATGTGGAGTGTACCATGGTGGAGAAGAGAGTCCTGGCCCTGGCCTGGGACAACCCCTTCCTCACACACCTCTACTCCACCTTCCAGACCAGGgaaCACCTGTTTTTCGTGATGGAGTACCTGAATGGAGGAGACCTGATGTTCCACATTCAGGATAAGGGTCGCTTTGACCTCTACAGAGCCTCGTTCTACTCAGCAGAGATCATAATTGGACTGCAGTTTCTCCACTCAAAAGGAATAATTTACAGGGACCTGAAGCTGGACAATGTGATGCTGGACAGAGACGGCCACATTAAGATCGCTGACTTTGGGATGTGCAAGGAGAACGTGTTTGGAGAGAATCGGGCCACTACTTTCTGTGGGACGCCAGACTACATCGCACCAGagATCCTGCTGGGACAGAAGTACACCTTCTCCGTGGACTGGTGGTCGTTTGGGGTACTGGTGTATGAGATGCTGATCGGCCAGTCGCCGTTCCAGGGTGATGACGAGGATGAGCTGTTTGAGTCCATCAGGATGGACGTGCCTCACTACCCTCGCTGGATCACCAAGGAGGCTAAGGACCTATTGGAGAAGCTGTTTGAAAGAGACCCCAGTCGCAGGCTAGGTGTGGTGGACAACATCCGCGGCCACTCCTTCTTCAAGAACCTCAACTGGCCTGCcctggagaagagagaggtggacCCCCCCTTCAAACCTAAAGTGAAAGGCCCCAATGACTGCAACAACTTTGACCGGGAGTTCCTGAGTGAGAAGCCCCGCCTCTCCCACACGGACAAGAACCTAATCGACTCTATGGACCAGACAGCCTTTGCAGGCTTCTCTTTCATCAACCTCAAGATGCAACACATTATGGACAAATGAAGGCACAACAAGATTCCCCCATCTCTTTGTTTCAACCGCACCATTATAAACGCataggaaagggaggagggggaaaCCAGTGTTGCATTTATCTCTGTGGTGGTTCCTTCAATAATGGTGTCTTTCTTTTCCTTGGGATCAAACCTTGAATTAATCCATGTACTGTACTTTATCCCCCAACATACATCAACACACTCATTTACACACACCCCATAGTTCAGTTGTAGTTCAGTTTTAGTATTGTCCATGCTGGGATGTCAGGGGTCAAATGTGGCTCTCTCACACACCCGTGTGCTCTGCCTACTGTATGTCACTCTTTCCCGTCCCATCATTCACAtcattgttttgtgtgtgtgtttttactgtccttgtggggaccagaagtcctcacaaggatagtaaaacaatgaTCATTCAGGCAAGTGAGGACATTTTGCTGGTCTTCACAaggaaaaatgctattttagACTTAGGGATTAGGGTTATAATTAAGGTTGGGGCTAGGGGTTACGGTTAGGTAtagtttggggttaaggttagatttaggggttagggaaaataagaTTTTGGATGGCAATCAAGTTTTTGGCCCCCACAAGGATAGCAATATagaagtgtgggtgtgtgtgtgttggagcacTCACTTACTGTGCATAAATGTATGCATGAATGAATATGTCTGAGTGACAGCATGAATCTCCagtatattttaaatgttttataatgAAAAGAACGTTTACTTTTTCAGGTGCGAATTCAGTACCCTGTGTAAGGTACAATTAATTAATTTGAAAGggtgataaaaaaaaacaaatgatagaacACCAAAGTTACAGGACCAGTAGAGGATGCACAGATTTATACAGGCATGGATAGTCTCTCACCTTGGTCTGCCCATCCACATGATATAAAACTAAGGATTTGTAAATGGTACTGCAGCTTCCCCACTCTCCGGAACAAACCAGAGCTACTCTGATCAAACCACAGCTACCCTGATTCAGATCTGCGTTACAGTAGTGTGAAATGGAGTGGGACATCATACTGGAAGGAGTTAATGTAATGGTACTCTGCAGTCATTCGTCTTGAAGGTtatgggtgtgtgttgggggggattCCTTTAGAAAAAGGATGGATAAATTGGGTCTTGTGTTACTTGAATGTAGGTATTTTAAAaagcaaataataataatatgctgtACGTTAAATGAATATGTGcattgccttcggaaagtattcacaccccttgactttttccacatattggtattacagcctgaatttaacatttattaaattaggtttttggtcactggcctacaaaaacaataacccattatgtcaaagtggaattgttggaaaaaaaaaaacatttttacagattaattcaaaatgaaaagcttatgtcttgagtcaataagtattcaacctaaCCTCTTTCTTATGGCAAGATTAAATtatttcaggagtaaaaatgtgcttttcaagtcccaagttgcatggactcactttgtgtgcaataatagtgtttttaACACAGTCATAGAAAAAAgaccatctctgtaccccacacatactgtaagggcCTTCAGtgaagcagtgaatttcaaacccagattcaacctcaaagaccagggaggttttccaatgccttgtaaagaagggaacctattcataatgggtaaaaaataaaataaaaagacactgaatattcctttgaacatggtaaagttattacactttggatggtgtatcaatacacccagtcactacaaagataaaggcATCTTTCCTAACTCCATTGCCAGACAGAAAGGAAACCACTCCGGCCAATggcgactttaaaacagttacagagtttaatggatgtgataggagaaaactgaggatggatcaacaacattatagttactccacaatacttacCTAATACACAAAGGGAAAgatggaagcctgtacagaataaaaaaaacaGGGCAAAGCAATGCACttcttgtcctgaatacaaagtgtttgtttggggcaaatctaatacaaaacatttctgagtaacactctccatattttcaagcatagtggttgcATCATCTTATGGGTATATGtctaatcgttaaggactggggagtttttcaggatcaaatagaaatggaatggagcacaggcaaaatcctagaggaaaacctggatcAGTCAGCTTTCCACCAGACTCTGgaagataaattcacctttcagcaggacaacctaAAACATAAGACCACATCGACActggttgcttaccaagaagacagtgaatgttctggagtggccaagttacagttttgacttaaatctatggcagaatctatggcaaaacctgaaaattgttgtctagcaatgatccacAACCAATTTGAaacagcttgaagaattttgaaaaggaGTAATGTGCAAATGTTGTACAGTCCAGGTGTGGCATGTtcatagagacttacccagaaaaagactccgctgtaatcgctgccaaaggttattctacaaagtattgactgggGTGTGAATACCTATGAACATTTCTGTACTTAATTTTCAAtccatttgaaaacatttctaaaaaaacatattttcactttgtcattttgtgttgtgtgtagatagataagagaaaaatatttaatcaattttcaattcaggctgaaagacaacaaaatgtggaataagccgaggggtataaatactttctgaaggcactgtatattgcccTAAATAGTTACAATATTTGGTGACGTAAggatatactttttttttactgTCTTCGTATTTTACGTCTGATTATAAATAAACAGATATTTAACTCTAAA

Function

GO: NA

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697936 lncRNA upstream 2709 72544161 ~ 72544443 (+) True G1484943
TU1697883 lncRNA upstream 92996 72453953 ~ 72454156 (+) True G1484896
TU1697870 lncRNA upstream 102429 72444508 ~ 72444723 (+) True G1484886
TU1697856 lncRNA upstream 121592 72425316 ~ 72425560 (+) True G1484872
TU1697839 lncRNA upstream 141945 72404800 ~ 72405207 (+) True G1484855
TU1697993 lncRNA downstream 74848 72660006 ~ 72675667 (+) True G1484985
TU1698014 lncRNA downstream 104486 72689644 ~ 72693477 (+) True G1485006
TU1698076 lncRNA downstream 204913 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA downstream 204913 72790071 ~ 72790719 (+) False G1485065
TU1698078 lncRNA downstream 204913 72790071 ~ 72790947 (+) True G1485065
XM_036950582.1 mRNA upstream 23385 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA upstream 23385 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA upstream 23385 72453362 ~ 72523767 (+) True LOC110494508
XM_021569633.2 mRNA upstream 327078 71979900 ~ 72220074 (+) False LOC110494505
XR_005037063.1 mRNA upstream 327078 71979900 ~ 72220074 (+) False LOC110494505
XM_021569640.2 mRNA downstream 1630 72586788 ~ 72600870 (+) False LOC110494511
XM_021569641.2 mRNA downstream 1630 72586788 ~ 72600870 (+) False LOC110494511
XR_005037065.1 mRNA downstream 1630 72586788 ~ 72621297 (+) True LOC110494511
XM_036950583.1 mRNA downstream 16167 72601325 ~ 72612798 (+) False LOC110494512
XM_021569644.2 mRNA downstream 16360 72601518 ~ 72611039 (+) False LOC110494512
TU1697884 other upstream 92228 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 241740 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1164880 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1366723 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1705922 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 459579 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 537668 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 696102 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1393732 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1803378 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile