RNA id: XR_005037065.1


Basic Information

Item Value
RNA id XR_005037065.1
length 3277
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110494511
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72586788 ~ 72621297 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAACATGCGCAGTGGCAGTTTGTGCCATATTGGAATGAGGTCGTGAACGACTAGGCGGAAAGAGACGGCATCTAAAACCGAGTTGAAAAACTATTTACTGAGCTTCTAGACTTGGTCGGTAGGAGGAGCCAACATGAGTCATGAGTTGCTGGAGTCCGacgGAGACTCTAGTCTGGATGTGTCTGACTTTAACTGGGATGACTATTTGGAGGAGAACGGGGCAGTGTCTGTGCCCCACCATGCCTTCAAACACGTGGACCAGGGCTTGCAGACAGGTCTGACTCCAGGTATGAAGCTGGAGGTGTGTGTGCGTTCAGAGACCGACCAACCCTACTGGGTggccaccatcatcaccacctgtGGCCAGCTGCTCCTCCTGCGATACGAAGGTTACCACGACGACCGCCGTGCCGACTTCTGGTGCGACATTATGACGGCTGACCTCCACCCCCTGGGCTGGAGCCGGGAGCAGAGCAAACCCATGAGACCCCCCGAGGGTGTGAGAGAGAAGCAACCAGACTGGGAGGGTGTCCTGGAGAAAGCCCTAGCTGAGAAGTGTAGTGCACCTGCCAACCTGCTGGAAGGGcccCAGCGTGGTAAGGACCCAGTGGACCTGATGTCTCCAGGCTGCAGTGTGGAGCTGCAGGATAGTGTTGACCCTGGGGTGGCGTGGGGCGCTGAGGTGGAGGAGAACATGGGTGGCAGGCTGAGACTACGCCTAGCAGGCACAGAGAGACTCCCTGATACACACTCCACCCTCTGGCTCTACTACCTGCACCCCCGCCTCCACCCACCTGGCTGGGCCAAAGAGCACGGCTGCACCCTCAGGCCTCCTTCAGccctggtccccctgcacacggaggaggagtgggaggaggtcagacagaggatCAGTAATCAGCCTCATGATGAGGCCCTCTCTGAAGAGTTCTATAAGGACCGGCCTGCCATTGCTGCCCACTGCTTTACTGAGGGGATGAAACTGGAGGCCGTTGACCCTACGTCCCCTTTCTGCATCAGTCCTGCCACCGTTATCAAGGTGTTCAGTGACAAGTGCTTCCTAGTAAAGATGGACAGTCTCCGTGGTGATGATTCAGGGGCAGAGGGCGTTGGGTCCTTCCTGTGTCACAGGGACAGTCCTGGGATCTTTCCTGCCCAGTGGAGCCTTAAGAACGGCCTCCCGCTCAGCCCCCCTCCAGGGTACCAGGGGCAGGACTTTGACTGGGCAGACTACCTGAAACAGTGTCAGGCCGAGGCAGCACCACAACACTGTTTCCTCACAGAACAGTCTGATCACAGCTTTAAAGAGGCCATGAAGTTGGAGGCGGTCAACCCAATCTCACCTGAGCACATTCACGTGGCAACGGTGACCAAGGTCAAAGGGCAACATATTTGGCTTGGCCTGGAAGGGCTGAAACAGGCTATACCAGAGCTGATAGCTCATGTGGACTCGTTGGATATCTTCCCTGTCAGCTGGTGTGAGACCAACGGTTACCCCCTGCTGTACCCCATCAAACCCAAAGTTGAAAAGCAGAGGAGGATTGCTGTGGTGCAGCCTGAGAAACACCGAGCACCACCCAAATCCACAACACCTGACACACTCAGGTTGCAGTTGGCCAGCCAATCTGAGACTGGACAGGGGAATGGAAAGTACTGCTGTCCCAAGATTTTCTTCAACCACCGCTGCTTCTCTGGCCCCTACCTGAACAAGGGCCGCATCGCGGAGCTGCCCCAGTGTGTCGGCCCTGGCAACTGTGTCCTGGTTCTCAAAGAGGTGTTGACTCTGCTGATCAACTCAGCCTACAAGCCCAGCCGGGTGCTCAGGGAGCTGCAGCTAGACCAGGAGGACCGCTGGCACGGCCATGGAGAGACACTCAAAGCCAAGTACAAGGGAAAGAGTTACCGGGCTACGGTGGAGATAGTGCGTACAGCAGATTGTGTGGCGGAATTCTGTAGGAAGACCTGCATCAAGCTGGAGTGTTGCCCAAACCTGTTTGGACCTCGCATGGTTCTGGAGCGCTGCTCAGAGAACTGCTCTGTGCTCACCAAGACCAAATACActtattattatggtaagaaGAAATGTAAACGAGTGGGCCGCCCACCAGGGGGGCATTCTAACCTAGAAGGAGGGGTGAAGAGAAGGggtagaaggaggaagaggagaaagcaACTATTTGTCCATAAGAAGAGACGCTCCTCAGCCTCACTAGACAACACACCTGCCGGTTCACCACAGGGCAGTGGAGATGAGGAGGATCTGGATGATGAGAACTCTCTGAGTGACGATACTGGCTCTGAGCTCCAGGATGATCAGGACGATTCAGAATATTCCATTGGGAAGTCTCAACCAcccaccccatccccctctcctcctgcaaCGCCTAGACCAACCCGAAAACGCAGGAAACCTCGCTCCCCATCTTACTCTGATGATGAGAACCACCCACCTTCACCAAAGAGCTTGAGAGGTGAGGCTCCCCAGAAACTGTGTTTGGACACCAGTCCCCTGGAGTGgagtgtgactgatgtggtgtgtttCATCAGAACCACCGACTGTGCTCCCCTGGCACGCATCTTCCTGGATCAGGAGATTGATGGACAGGCTCTGCTTCTGCTCAACCTGCCCACACTGCAGGAGTGTATGGACCTGAAACTGGGACCAGCCATAAAGCTGTGTCACCATATCGAAAGGGTGAAACTTGAATTCTACCAGAAATTTGCTACATAGCTGAGGGTTCTGAACGAAATAAACATTACATACAGTCAGTAACATTAAATGACTCCATAACTGATTTCCAGCTGGACATGCTTTGGACCCTGCACCCAGGCCCAGCACAACAGCAGCAGTCATGCATGGACATCAGATGGATCAAGACTTTCATTTTTGCCTGTTTTTTACTGTGTAATGGTCAGAAAGGGTTCTGCCTCGTTGTATTCTAGGTAAAGACACCTTAACATGGATATTCATGTTCAGGTTTATCTCACCCACAATATCAAAATGACTCCTGGTTTCATTTGATCAACTTGACAAGCATTGACAATGCAAGGATTTAAGCACAAAGACAAATAAACCATGTACTATATTGCGGTATGTAAAGTGTACATAGCAGGGTGAATTTGTATATAGTGTACATATTTAAAAGGTCTTCTAGTACAATAGGGTGATTAATGGTTATAGCTTGATTTTCTACTAAACATATTTGCTTTGAAAGTATCTGTGCAAAGGTCTTATTTCAAAATGTAGACACACTTTTGagattggaaacccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1697936 lncRNA upstream 42345 72544161 ~ 72544443 (+) True G1484943
TU1697883 lncRNA upstream 132632 72453953 ~ 72454156 (+) True G1484896
TU1697870 lncRNA upstream 142065 72444508 ~ 72444723 (+) True G1484886
TU1697856 lncRNA upstream 161228 72425316 ~ 72425560 (+) True G1484872
TU1697839 lncRNA upstream 181581 72404800 ~ 72405207 (+) True G1484855
TU1697993 lncRNA downstream 38709 72660006 ~ 72675667 (+) True G1484985
TU1698014 lncRNA downstream 68347 72689644 ~ 72693477 (+) True G1485006
TU1698076 lncRNA downstream 168774 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA downstream 168774 72790071 ~ 72790719 (+) False G1485065
TU1698078 lncRNA downstream 168774 72790071 ~ 72790947 (+) True G1485065
XM_021569639.2 mRNA upstream 1630 72547152 ~ 72585158 (+) True LOC110494510
XM_036950582.1 mRNA upstream 63021 72453359 ~ 72523767 (+) False LOC110494508
XM_036950580.1 mRNA upstream 63021 72453362 ~ 72523767 (+) False LOC110494508
XM_036950581.1 mRNA upstream 63021 72453362 ~ 72523767 (+) True LOC110494508
XR_005037063.1 mRNA upstream 366714 71979900 ~ 72220074 (+) False LOC110494505
XM_036950584.1 mRNA downstream 9025 72630322 ~ 72639097 (+) True LOC110494513
XM_021569648.2 mRNA downstream 196871 72818168 ~ 72828562 (+) True LOC110494516
XM_036950594.1 mRNA downstream 241062 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA downstream 241067 72862364 ~ 72864606 (+) False LOC110494520
XM_021569654.2 mRNA downstream 241241 72862538 ~ 72864606 (+) False LOC110494520
TU1697884 other upstream 131864 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 281376 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1204516 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1406359 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1745558 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 423440 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 501529 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 659963 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1357593 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1767239 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile