RNA id: TCONS_00046421


Basic Information

Item Value
RNA id TCONS_00046421
length 1712
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_023465
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24273371 ~ 24282427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTTTGTGAGGTTGATCCTCCAGAAACACTAGTTCACAATCAGTCCGGGGTTTGGAGCATGCAGAACATGCTGACGGTGATTGCAAACGCGCTTAAAGGTGGTGCCAAAGTGAATGGCTCCAGAGTGGTGGTATCATCACGTTCATTTGCCGACTTCACACCTCAGGCTAACTTTgacataaagAGGTGTGACCTTCATCGTTTGGACGAAGGCCCATCGGTGCAGACGGTGCTCACCAGAGAGGATGGACTCAAGTACTATCGCATGATGCAGACCATGAGACGCATGGAGCTGAAGGCAGATCAGCTTTACAAGCAGAAGATCATACGAGGATTCTGTCACCTGTATGATGGCCAgGAGGCTTGTGCTGTTGGCATTGAGGCTGGTATCAAGCCCACAGATCACCTGATCACAGCATACAGGGCTCATGGTTACACCTACACCAGAGGAGTGTCTGTGAAGGAGATCATGGCAGAGCTCACAGGCAGAAGGGGTGGTGTTGCTAAAGGCAAGGGCGGCTCTATGCACATGTATGCCAAGAATTTCTATGGCGGTAATGGTATTGTTGGTGCCCAGGTTCCTCTCGGGGCAGGTGTGGCGCTGGCATGTCAGTATCAGGGGAAGAATGAGATTTGTGTCACTCTGTACGGAGATGGAGCTGCCAATCAGGGTCAGATCTTCGAGTCGTTTAACATGGCAGCTTTGTGGAAACTCCCCTGCATTTTCATTTGTGAGAATAATAAATATGGCATGGGGACATCAGTGGAACGAGCCTCTGCCAGCACAGACTACTACAAAAGAGGAGACTTCATTCCTGGATTGAGGGTTGATGGTATGGATGTTCTTGGTGTCAGAGAAGCAACCAAGTTTGCAGCAGATTATTGCAGATCtggaaagGGTCCCATATTAATGGAGTTGCAGACATATCGTTATCATGGCCACAGCATGAGCGATCCTGGGGTCAGTTATCGCACACGTGAGGAGATCCAGGAAGTTCGCAGTAAGAGTGATCCCATCACAACGCTCAAAGACCGCATGATTAGCAGCAACATGGCCAGTTTGGAGGAGATCAAGGACATTGATGCAGATATCCGTAAGGAAGTGGAAGAAGCAGCACAGTTTGCCACCACTGATCCAGAGCCGCCGCTGGAAGATTTGTGCAACCACATCTTCTACAATGATGCTCCATTAGAGGTCAGAGGCACAAACCCCTGGACGAGACTCAAATCCATCAGTTGAAGAATTAATGCTAATGATACAGCTATTCATTCCTCTCATAATCCTATATGCACAAACAGATGGATAATTTTGATATCCATAAAAACGTAATTACATTCCTTTACAGCCGGTACTTTTAGCTTTGCAgactgttatatttatatatttggaaGCACATAGTGTTGAATGATCAATGTTTAATTCCAATATTAGAAAAATAGATTATTTTGAAAATAGATTTTAATGAGCTCAGTCCTTGTCTCTAAATGGAATTCTTAGCAATGATttataaacagttattttttatcatcatatTGCAATATGATGCTCAATATGAAGTTTTGGATACTGAATTCATTGGACTATATTTAGTTCTACATTAAATGAATTGCTGTTTGTAACAATACCGTCATTAGAACCTATGCTTACAGGAACATTTACAGAATGTTCTCTCAATGTTATGAATAAACATTACAGTAATTGAACTTCAA

Function

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005967 mitochondrial pyruvate dehydrogenase complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-96 Predicted to enable pyruvate dehydrogenase (acetyl-transferring) activity. Predicted to be involved in acetyl-CoA biosynthetic process from pyruvate. Predicted to be located in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHA1 (pyruvate dehydrogenase E1 subunit alpha 1).

Ensembl:

ensembl_id ENSDART00000018420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046418 lncRNA downstream 104987 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046410 lncRNA downstream 158565 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00047193 lncRNA downstream 174570 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00047192 lncRNA downstream 174575 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00046860 lncRNA downstream 516152 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046423 lncRNA upstream 134518 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047194 lncRNA upstream 134518 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046424 lncRNA upstream 134518 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046861 lncRNA upstream 137489 24419295 ~ 24451803 (-) False XLOC_023466
TCONS_00047195 lncRNA upstream 149966 24431772 ~ 24451803 (-) False XLOC_023466
TCONS_00046419 mRNA downstream 1820 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046416 mRNA downstream 104916 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046417 mRNA downstream 104974 24164988 ~ 24168475 (-) False XLOC_023463
TCONS_00046413 mRNA downstream 110248 24120772 ~ 24163201 (-) False XLOC_023462
TCONS_00046412 mRNA downstream 126574 24120772 ~ 24146875 (-) False XLOC_023462
TCONS_00046425 mRNA upstream 419974 24701780 ~ 24724233 (-) False XLOC_023469
TCONS_00046426 mRNA upstream 420214 24702020 ~ 24724284 (-) True XLOC_023469
TCONS_00046427 mRNA upstream 451501 24733307 ~ 24797455 (-) False XLOC_023470
TCONS_00046428 mRNA upstream 461483 24743289 ~ 24796695 (-) False XLOC_023470
TCONS_00046429 mRNA upstream 461724 24743530 ~ 24796583 (-) True XLOC_023470
TCONS_00046414 other downstream 110339 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 126574 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 155054 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 296164 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1000090 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 726511 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2077433 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 2079940 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 2193376 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 2227082 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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