RNA id: XM_021569648.2


Basic Information

Item Value
RNA id XM_021569648.2
length 2324
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110494516
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72818168 ~ 72828562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACGTCGAAGATTGCTGACTCAGAGGATGTTTTGGAGGAAGTgacaagagactgaaaagaaaaAGAAATAGGCCCTCTTCAAGTATACCTACAGGGATTCCTCTTGCTTAATACTTTATCTTACTTTGGAAACACAGGTGGCTTACCTACTAGTATTGAAAGTATATATTGCATATCATTAAACAGACGTGCGTTCTGACAGCAACGTTACCACACCACTAACTAGCAAACGAACGTTAGGTTgttgggtggggggggtgggtcGTCTGTTTTTCATCTAGTTAGACGAAAGACCCATTTGGACATTCCTTAACATTCcttccctgtgtttgggttgaTCAAGCTGTGGCACAATGACGTCTAGGAAGAAAGTACTACTGAAAGTCATCATCCTGGGAGACTCTGGAGTTGGGAAGACGTCGCTGATGAACCAGTATGTGAATAAGAAGTTCAGTAACCAGTACAAAGCCACAATAGGAGCTGATTTCCTAACGAAAGAAGTGATGGTGGATGACAGACTTGTCACCATGCAGATCTGGGACACTGCAGGGCAGGAGAGGTTCCAGTCTCTGGGTGTAGCGTTCTACCGCGGGGCAGACTGCTGTGTGCTGGTGTTTGACGTGACTGCCCCCAACACCTTTAAGACGCTAGACAGCTGGAGGGACGAGTTCCTTATACAGGCCAGCCCCCGAGATCCCGAGAACTTCCCCTTTGTGGTGCTAGGCAACAAGATTGACTTGGAGAACAGACAGGTGACGACCAAACGAGCACAGGCGTGGTGTCAGAGCAAGAACAACATCCCCTACTTTGAGACCAGCGCTAAGGAGGCCATCAACGTTGAACAGGCTTTCCAGACTATCGCACGCAATGCTCTTAAACAGGAGACAGAGGTGGAGTTGTACAATGAGTTCCCTGAACCGATAAAGCTGGACAGGAACGAACGGGCCAAGCCATCAGCGGAGGCCTGCAGCTGCTGAGGACCTAGGAGACCTACAGGGGACAACTGTTTGCCCTGCTACTCTGTCTTGCCTTGTCTACCCTTTATCCCACATGCCCCTGTGTGCTCTCCTCTGCCCAATATCATCACTGGCCTTCGTAGATGCAAGCAGAGTTCCGCTCGTAAAGtatactttacacacacacacacacacacacacacactggactcatcCCTGTGTACACATCACACATTTACTCTCAAGATGAGTTTCCAAGCCCAAAGAACACCCAGATGGATATTAGAGCATTTAACAGCATATCTGCTTATTATTTCCCCTTAACCTGTCTCTTTAGATGCCATTGTTTCCATGGCACCAGCCTCATAACATTTTATAAGGGGGGGTTAGATGTAGTTCACTCCCAAAGTTCCAGTGGTGAGTCATATCAATGGTATGTGGGGGTTATACCAATGTACTGCCTAAAGATACATGTGTTAATTTGATTGGATGTAAACTAGCAAATCCAACATACAAGTGTGTTTAAGGCATATTTTGCACTTTGTTGTCATGTAGGCTTATTCAAACCCTATTTGACACCTTATTTTGGAGCCACAATAAAcactttttaatttatttttttagctCAAGGCAGAAGAGGCAATATGGATTTTAACTCTGCTCTCCAACTTCCATGATGTCCTCAACTGCCCTACACATTGTTTCTCAATGGGGGAAAAGTCAAGCGGCAAATTATTTTGTCAACATTGAGACCTGACACGGGGTAGAGAATCAAACCAAGGGAGATATATTTTCAGAATAGAAATATCTCTTTACTATTATTAGTACCTGTCTTCTTTTTATGCTGTCAACTATTACAAACCTTTGTCAATCGTTTAAGGCAAGAAAACATGTCTTGACAGTTTCTCGCTCTGCCGATAGCTCAGGTTGGCAAATTATTTAAGTGCTTGATTTGTATTTTTTACCGATCAGATCTTTTGTCTGTTCGCATATGTTTAGAATTTGAATTGCATCAGAGGACATATGGGGGAAATGTGTTAGCTTTAATCAAGTTAATGAAATGATAAATGCACTTAATCTACATTGTTTGAAAATGTCTTTGGGTTTCAGGTAGTAATAATGGTTATTGAATaaagaatctgtgtgtgtgttagtgcaaGTAGAACAGGTAGTTAAAGCACAGTAGCACTATCATGGCTCTCATACACACAGCTGTTGAAAAACAGTTTACTCAAATCTATAGTATACTCTTGAATACATTGAAATGTGTCATTTTGCATGGGGGCACTCACTTGGTATTTGTATTCAGTCTACTACTTGTACTGAAATATAAAAATTGGTCACTTGTGAAAGTTGACAGAACACGG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07897 RAB7A; Ras-related protein Rab-7A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698083 lncRNA upstream 19953 72797895 ~ 72798215 (+) True G1485070
TU1698078 lncRNA upstream 27221 72790071 ~ 72790947 (+) True G1485065
TU1698076 lncRNA upstream 27449 72790071 ~ 72790719 (+) False G1485065
TU1698077 lncRNA upstream 27449 72790071 ~ 72790719 (+) False G1485065
TU1698014 lncRNA upstream 124691 72689644 ~ 72693477 (+) True G1485006
TU1698032 lncRNA downstream 18307 72846869 ~ 72852122 (+) True G1485023
TU1698228 lncRNA downstream 194553 73023115 ~ 73036053 (+) True G1485196
TU1698266 lncRNA downstream 259140 73087702 ~ 73087929 (+) True G1485233
TU1698271 lncRNA downstream 266022 73094584 ~ 73094800 (+) True G1485238
TU1698295 lncRNA downstream 290825 73119387 ~ 73119600 (+) True G1485257
XM_036950584.1 mRNA upstream 179071 72630322 ~ 72639097 (+) True LOC110494513
XR_005037065.1 mRNA upstream 196871 72586788 ~ 72621297 (+) True LOC110494511
XM_036950583.1 mRNA upstream 205370 72601325 ~ 72612798 (+) False LOC110494512
XM_021569643.2 mRNA upstream 205370 72601520 ~ 72612798 (+) True LOC110494512
XM_021569644.2 mRNA upstream 207129 72601518 ~ 72611039 (+) False LOC110494512
XM_036950594.1 mRNA downstream 33797 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA downstream 33802 72862364 ~ 72864606 (+) False LOC110494520
XM_021569654.2 mRNA downstream 33976 72862538 ~ 72864606 (+) False LOC110494520
XM_036950597.1 mRNA downstream 33984 72862546 ~ 72864606 (+) True LOC110494520
XM_021569661.2 mRNA downstream 215784 73044346 ~ 73048491 (+) False LOC110494525
TU1697884 other upstream 363244 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 512756 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1435896 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1637739 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 1976938 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 216175 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 294264 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 452698 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1150328 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1559974 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile