RNA id: XM_021569653.2


Basic Information

Item Value
RNA id XM_021569653.2
length 1227
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110494520
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 72862359 ~ 72864606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGAAAGATGGCCGCGGTGACCGTCAAGTCGAAATCAATGAAAACGCTCTATCCGCTGTGAAATGAGATTTGCGGAAGAGGAGTTAGCAGGCGTGGCAAAATAACTTCCGCCTTTAAAACCCACTACAACAGAGAAATGACAGCGACCCTGCGCCCATACTTGAACGCTGTGCGTGCCACACTGCAGGCCGCCCTCTGTCTGGAGAACTTCTCCTCTCAGGTAGTGGAACGCCACAACAAACCAGAGGTGGAGGTCAGGAGTAGTAAAGAACTCCTACTACAGCCTGTGGTGATCAGCCGCAATGACAAGGAGAAGGTCCTAATTGAGGGCTCCATCAACTCTGTGCGAGTCAGCATTGCTGTGAAGCAGGCTGATGAGATTGAGAAGATCCTGTGCCACAAGTTCATGCGCTTCATGATGATGAGAGCTGAGAACTTCTTCATTCTCAGGAGGAAACCAGTTGAGGGCTATGACATCAGTTTCCTCATCACCAACTTCCACACGGAGCAGATGTACAAGCACAAGCTGGTGGACTTCGTCATCACCTTCATGGAGGAGATCGACAAGGAGATCAGCGAGATGAAGCTGTCTGTCAATGCCCGTGCCCGTATCGTAGCGGAGGAGTTCCTCAAGAATTTCTGAGTTGGTGTCCTCTCATCCCTCACTGATCATATGACTTGGCCATCACTATGGATCTGTGAGACAGGGCAGGCTCAAGGGTCCGATAGCAGGAAGAGGGTAGAGAAGCGTACTGTAAGTGAACAACCAATCAGTGAGGAATACCATAGAAAAGTGACCAATccagtgtgggtgggtgtgtgtggcacCCAACTGCATATCACAAGTATTTCCCTGTACTCATAAATATTGATGACTGTATATAATGAATTATTTTCTAATTAGAACAAATCTCAAAGCCAAGGCGGGTCCTTAAGTATTAACCAGGTTGATATTCATGATTACCGGGACAATGAGAATGTGTTGTGCCAACTGAAACGGCCTGTGTTGTTTTTATACATTCTGTGACTTTATGTACTCTTGTGTTTTGTTACAACAAAGAAAATGTAACCTCAAAATGTAACGATCATCACGGagataaatttaaaaaatatgtatgttTACATTTTATTACAAGATACCACAGATTTATTGAACTGTCCTAAAATAAGCCATGTTTGAAATGATCACCAATAAAACTCATGAGAGCTTGTTTGTAGTTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698032 lncRNA upstream 10242 72846869 ~ 72852122 (+) True G1485023
TU1698083 lncRNA upstream 64149 72797895 ~ 72798215 (+) True G1485070
TU1698078 lncRNA upstream 71417 72790071 ~ 72790947 (+) True G1485065
TU1698076 lncRNA upstream 71645 72790071 ~ 72790719 (+) False G1485065
TU1698228 lncRNA downstream 158509 73023115 ~ 73036053 (+) True G1485196
TU1698266 lncRNA downstream 223096 73087702 ~ 73087929 (+) True G1485233
TU1698271 lncRNA downstream 229978 73094584 ~ 73094800 (+) True G1485238
TU1698295 lncRNA downstream 254781 73119387 ~ 73119600 (+) True G1485257
TU1698296 lncRNA downstream 255233 73119839 ~ 73120040 (+) True G1485258
XM_021569648.2 mRNA upstream 33802 72818168 ~ 72828562 (+) True LOC110494516
XM_036950584.1 mRNA upstream 223267 72630322 ~ 72639097 (+) True LOC110494513
XM_036950583.1 mRNA upstream 249566 72601325 ~ 72612798 (+) False LOC110494512
XM_021569661.2 mRNA downstream 179740 73044346 ~ 73048491 (+) False LOC110494525
XM_021569660.2 mRNA downstream 179740 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA downstream 179740 73044346 ~ 73049958 (+) False LOC110494525
XM_021569672.2 mRNA downstream 502196 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 531134 73395740 ~ 73416687 (+) False LOC110494537
TU1697884 other upstream 407440 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 556952 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1480092 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1681935 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 2021134 70839620 ~ 70841230 (+) True LOC110494494
TU1698249 other downstream 180131 73044737 ~ 73045588 (+) True LOC110494525
TU1698303 other downstream 258220 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 416654 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 1114284 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1523930 74388536 ~ 74409189 (+) False LOC110493252

Expression Profile