RNA id: XM_021569660.2


Basic Information

Item Value
RNA id XM_021569660.2
length 3905
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110494525
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73044346 ~ 73049958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGAAACCTTATGGGCTAGTATCCACCGTGTGACAATGTGCTATCAAGGCCGGACCTAAAAATTGAGTGCCCTGGGGCTATTTTCGTCAGATATTTGGTAATAGCTCAGTAGTCGGGACAGGGCATCGTCTGACTCTATCGTTGAGAGACATGGACCAGCCGCGAACGGGACACACTTCATTGACTAATTTTAATTGTTAATGCTGATGCTCTGAATGGGAAAACAATCATTTCCCTGTCGTCATTATTAAAGATGTCAGACAAAGCGTATAGCTGAATCAAACTGCGGCTCTATTGGACTTCAAGCGATAGATTGGGATGTAGGCTATGCGAAATTGTGCGGTTCGCATTGGAATGCGGTTATCTTTGGAATAAACAAACGCATGTGATGCTAAGGCGCATCTGCACTGCTGCCAAGAATAATAAGACTATTTGACTGTGGGGAGTTTTCTTGTCATTGGATTGCTAATAATCCATCCAGTTGGATTGTCAAAAACCTATGAAACGATTTGAAGGTCGCCTTCGATTTGAGATGTTGGCGATTAACTGCGCTTTAATTGTAGCGTTCATGCACAGCGGGACAGCCTCCAGGTGTGTAGACCATGCCTGCAGTCCTCCCATGGGCAACCTGGCCAGTGGTAGGACCCTCACCACCCTCTCAGGCTGCTGTGGGAATGGGTCCCACCACTCCCCATGCCCCACTCCCCTCCACACCTGTCCAGATCATCTCCACCCTCCTGCCCACATGGTGGATGATCCCTTCCTGCACCCAGACACCTGGTGGGGCTCGGGCGTGGGCACTGACCAAGTGGAGGAGGTCCGTCTGGACCTGGAGACCCGTTTCTGTCTGACCCATGTGGTGCTGCTGTTCCACTCACCCAGGCCCGCTGCCATGGCCATGGAGCGCTCGCAGGACTTCGGCCGGACGTGGGAAACACTCAAGCTGTTTGCACAGAACTGCAGTCTGGCGTTTGGTCTTCCTGATGACACCAGTCAGCATGGCTCGCGGTGTACGTCCCGGTACTCCAGTGCCAAGCCGTGCAGCAGGGGAGAGGTGATATTTCGGACTCTGGGTCCTGGTGGATTAGTTGACCCCTACAGTCCAGAGGGCCTTTCCCAGCTGACCCTCACCAACCTCCGCCTCAGACTTCTCAAGGCTCAGACCTGCCCATTATCTGTTGCGCCTtccacctcttcttcctccatcAGACTCTTCAAACCTCCTGCGGACCTGAatcttccccttctcccttccccccAGCCCAGCTCAGAGGCCCCTGCCTCAGCTCCATTTGCCATTTACACTCTCCTGGCTCGGGGGACCTGTCTCTGTCATGGCCATGCAGAACACTGCTTACCCCACAGAGGTGGACAGGACACACTGAAGGACATGGtggctggcaggtgtgtgtgcaCTCACCACACAGCAGGAGAACACTGTGAAAGGTGTGGCCCACTCTACAATGACCAGTCCTGGAAGCCAGCCAATGGCAGCAGTGGGGAGCCACACCCGTGTCATAAGTGTGAGTGTCACGGCCATGCAGAGAGCTGTCATTTCTCCAAGAGGGCGTGGCTGTCCTTGGAGGGCACCAGTGGGGGTGTCTGTGACGACTGCCAACACAATACAGCTGGGCGCAGGTGCCAGCGCTGTCGCCACGGTTACCACCGCCAACCAGCCATGCCCCTCAACTCCCCCCACATCTGCACACGTTGTTGGTGTGACCCACTGGGCTCATTACCAGCCATCTCTGGGGAGGAGGGCCGATGGTGCCACCCCAGGAGTGGACAGTGCCATTGCAGACCTGGTGTGGGGGGAACAGGCTGCAACCATTGCCTCCCTGGATACTGGGGCTTTGGGGGAGAGGGGTGCAACCCCTGTGCTTGTCCCCAAAACTGTGACCCCCACACTGGGCTCTGCCTGGACAGCTATGCAAATAACCAGGTTTTAAATATACCTATGGGAGGCAAGATTCTTGCCATGGACCATGCCTTGACCACTGAGGGTGAGCCAGTGTGGTCAAAGCAACTGGCAGTCTCTGCCCTGCACTACACAGGGAAATGCAGTTGTAAGGAGAGAAAGTTGAGGAGTGTCTCAGATCTCTGCAAGACCAAATATGCCTATGTGATCAAAGCCAGTGTGTTGTCAGCTCATGACAAGGGGAGCCACGCAGAGGTACAGGTCAAAGTTCGCAAGGTCCTGCGTTCAGGACAGGTGCCTCTCTCCCAGGGCACCCACAGTATCTACCCCCTCTCCTGGACTAGCCGGGGGTGCACCTGCCCCATCCTTAATCCAGGTGTGGAGTACCTACTGGCGGGTCcagaggaggtagagacagagcggCTGCTGGTCACCATGCAGAGTGTGGTGGTTCCCTGGACCCCTCAACTGGGGACCCACATATCGGAGGGCCTAAGGCAGGGCTGCCCAGAACACCCTCTCCAAACCATTAACAGAGCAATTTGAAAGGAAATTGAGGGTTGTATGACTGGTTCAATAGATAATTCAGGAAAGGGACTGAAAGTCAGTGGAAAAGGCTTGACCGAGTGTCTTGACCAATGACGGCTATGGAAAATCTTCCCCCTAAAAGACTACAACCCTGCCATATGATGCAAAGAGGACTGACTGGAATCTTTTGAGCCATTCTTGTGAAGATGATTAAACTTGGGGGAAATACCACacacaaacatttaaaaaaaagcatCCTTCTGGAATCCAATGAATGTTTGGGTAGTCATATTTGAGCCATTATTTTCTGCAAGCCAGTGTTAACTATCAGACACAACAAACCCTGGTATACAAGCTTTACAGACTTTGTGTATGTCAAAAGCCATGCCTTTAATGATAACATCAAAATGCCTACTAGGTTCTATAACAATATATTACATTCCAGTCTCTGCTTTTAGTGTACTATATATTTATCAGTATCCAATTCCAATCATTTAGTGTTCCAATTAAAATGCTAAAAATACACCTACTTACTTAAATATTGAGGCACACAAGAGAGTGCACTGCTCTAGTCTGCAGCCTTCTTGGTGGGGAGTTTCCCAGGTCAGGCCACACTCCATTTTCTTTTCTATTGTTCTTCTCCATGTCTCTCTTCAGCGTAGTGCAATCGCAGGGTGCAGGTCTGGTGGTAATCTAAGTCTACACATCGCCATCGCCTTTTCCAGCAACAAATAGGGCCTACAAAGTACATCAAAAGATAAACCTGAGAAACTTAAGTGTTACGAAAATGTAGCTAATATCTTAAtccaaggctgtgtgtgtggtgcagttTTACCAAAGAATAAACTCAGGATCCCTGAGGAAGAATCACTTTCAAAGCATCATGGGCCAGTCGTATATATGAATAGGTAGCTTCATTTGTGTTTGAAGGATTTAAACATAAGATTAGAAAGGTGTGAAAGAGGAAATTAGACATGGTTCAGTATTAACTTTAATCAGGAGAGGTTAAATAGGAGTAGCAGTCCATTAAGGTTTAAATTATGTTTTAAAAGCAGGTGAAGGAAGCGCCTGTGGATGGATACTCAAGCTTTGCACAATTTCAACattgactaaatagtttttgtaCAATGATTGCCTAGCACCTGTCTAGatgctactgtatatatatacactcacCAGCCTTTCTTCATAAGAACAGGAGTTGTTGATAAAAGCAGCCAGCACCAAACACATTTGGCCTTTCAGAACCCTCTAACTAGAAAagacatacttttgtgtatagtGTATGCGTACACCCATTCAAATTAGCAAATTAGGCTATTTCAGTCAtaccctttgctgacaggtgtataaaattgagcacacagccatgtagtctccatagacaaatatttgaattagaatggccttactgaagagcttagtgacttccaatgtggcaccttcataggatgcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698228 lncRNA upstream 8293 73023115 ~ 73036053 (+) True G1485196
TU1698032 lncRNA upstream 192224 72846869 ~ 72852122 (+) True G1485023
TU1698083 lncRNA upstream 246131 72797895 ~ 72798215 (+) True G1485070
TU1698078 lncRNA upstream 253399 72790071 ~ 72790947 (+) True G1485065
TU1698077 lncRNA upstream 253627 72790071 ~ 72790719 (+) False G1485065
TU1698266 lncRNA downstream 37744 73087702 ~ 73087929 (+) True G1485233
TU1698271 lncRNA downstream 44626 73094584 ~ 73094800 (+) True G1485238
TU1698295 lncRNA downstream 69429 73119387 ~ 73119600 (+) True G1485257
TU1698296 lncRNA downstream 69881 73119839 ~ 73120040 (+) True G1485258
TU1698884 lncRNA downstream 192755 73242713 ~ 73249014 (+) True G1485782
XM_036950594.1 mRNA upstream 179740 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA upstream 179740 72862364 ~ 72864606 (+) False LOC110494520
XM_021569654.2 mRNA upstream 179740 72862538 ~ 72864606 (+) False LOC110494520
XM_036950597.1 mRNA upstream 179740 72862546 ~ 72864606 (+) True LOC110494520
XM_021569648.2 mRNA upstream 215784 72818168 ~ 72828562 (+) True LOC110494516
XM_021569672.2 mRNA downstream 316844 73366802 ~ 73384379 (+) False LOC110494536
XM_021569673.2 mRNA downstream 345782 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 345782 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 394792 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 394792 73444750 ~ 73457632 (+) False taf4a
TU1697884 other upstream 589422 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 738934 72304723 ~ 72305412 (+) True G1484782
TU1696516 other upstream 1662074 71381944 ~ 71382272 (+) True G1483638
TU1696175 other upstream 1863917 71178513 ~ 71180429 (+) True G1483346
TU1695603 other upstream 2203116 70839620 ~ 70841230 (+) True LOC110494494
TU1698303 other downstream 72868 73122826 ~ 73125356 (+) True G1485260
TU1698921 other downstream 231302 73281260 ~ 73282019 (+) True G1485819
TU1699979 other downstream 928932 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1338578 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3633641 76683599 ~ 76684020 (+) True G1490016

Expression Profile