RNA id: XM_021569672.2


Basic Information

Item Value
RNA id XM_021569672.2
length 3653
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110494536
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73366802 ~ 73384379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAGCTGATGATGATTGGCTGATGTTTGATTCAGCTTCTAAAGTAGGCTATCAGGGTCGAAGCTCGCTCTCCAATGCATGAGGACTTGGGACAGTAATTTTAGATAGCATATCTCTATCTTTGAATCAATCAATTAATTACACGCATTCATTTGAAAATGGTGACTTTATTGCGTCGACGAGCTTCGGCGCTGCTTCTTGCGTGGGGTTATTGTATTTTGGCTGAGACAACTTTGTCTAACATCACTCTTGATAACGAGGTTCACTCCAGCTTCATCCAGCGCCGTCTGAGGAGCCAGGAGCGCCGGGAGATGCAGCGGGAaatcctctccatcctggggctGCCCCACCGGCCCCGGCCGCATATCTACACCAAACAAAACGCTGCCCCGATGTTCATGCTGGATTTGTACAACGCTATTTCCACGGACGGACAACAGCCAGCAGGCGTTTCATATTATAAGCCCGTTTTAACGACCCAGGGGCCCCAGATGGTGACCCAGCAAAACAGTATTTTCCTCAATGATGCGGATATGGTGATGAGCTTTGTCAATCTTGTTGAGCTGGATCAGAACGTCCTGTCTTCTCGGCGCAACAGGGAATTCCGCTTTGACTTGTCCCATATCCCAGAGGGAGAAGCTGTCTCCGCTGCAGAGTTCAGAATCTACAAGGACTATATCGGAGAACACTATGAGAATGAGACCTTCCATGTGAACGTGTACCAGGTGCTACAGGAGCCCCCTGACAGTGAGGAGGACCTGTTCCTGCTGGACACGCGTGTGGTGTGGGCTATAGAGGAAGGCTGGCTGGTGTTTGACATCACAGCCACCAGTAACCAGTGGGTAGTGAACCTGGACCAGAACTTGGGCCTGCAGCTAGCTCTAGAGAGCATGGATGgCCAGAGTGTGAACCCCAGGCTAGTAGGGCTGGTGTGGGGCAGTGGGCTACAGGACAAGCAGCCCTTTATGGTGGCCTTCTTTAAGGGAACTGAGGTTCGTCTCCGCAGCGTCCGCTCTGCCCACGGCCACAAGGGGCGCAACCCCAACCGCTCTAAAAACCCCAGGAATGCCCAGGACGCACTGAAGGTTGCTGAGGCTGCAGCAGAGACCCTCAGCACAGACCCGAAACAGGGCTGTAAGAAGCATGAGCTGTATGTCAGCTTCAGAGATCTGGGATGGCAGGACTGGATCATTGCACCAGAGGGCTATGCAGCGTACTACTGCCAGGGCGAATGCTCTTTTCCCCTGAACTCCTACATGAATGCCACCAATCATGCCATTGTGCAGACTCTGgTCCACTTCATAAACCCAGAGACAGTGCCCAAACCCTGCTGTGCCCCCACCCAGCTCCACGGCATCTCTGTCCTCTACTTTGACGACAGCTCCAATGTCATTCTGAAGAAGTACCGGAACATGGTGGTCAGAGCCTGCGGTTGTCACTGACCACCATTAGACTTCCCTTTCTCAGGATACACTGGGgctggtggaggaagaggaggaaggggaggaaatgGGGATTATGCAGCAAAACTCATTTATTGCCGGATCTATAAGGACCTGCTGCTTCAGGACTGGCAGGAAGACCAACTGCCTTTATTATTGGCTGCAAACTGACAAGTACTATCAATACTGCCTTAGCAGTAGAGACATACTGCCCTAGCAGTAGAGCCATACTGCCCTAGCAGTAGAGGAATACTGCCCTAGCAGTAGAGGCATACTGCTCTAGCCCAACTACGAAGAAGATCTTTGGCATCTGGATTGTCTCCACTACATGGTGCATTAAAGATAGGGACAAGGCTACTCATCTAGAGAGCGCAATAGAATTCCCAGTCAGTACCGTGGAGGAATGAAACATCACAGACACTGAACTGTCATCCATTTATTTATAATCTCATTTTTCTTAAGTGAACAAAGAAAGGAAAGTATTGATGAATACAAAAAGATGTCCCCCTGGATAGAGGCATGAGACTCAAATGAAATTCTAAAGATGCTCCAAAACGGAGCAGAATTAAGAATTTAGCAATTGCTTGTTTATCCATGAGTAGACATTTTAAGATGTGCCTTTGAACAAGATAAATCCAGTTTGGACAGTTCTGCTGTGTGCACCCAGCGCCTCTGTGTAAAACAATTGCTGGGTAAAACTGCTGCATCTGATTGCATTAGACAGTCTCTGAAATGGGTTTACTTTGACACGTTTCTTCTTTACAGCATAGTTCATTTTTTTCCACAAACAGCTGGGTTTACTTTGATTTCGATGAGAACAAAATGGCTGTCTGTTTTTCCTTTGAACGGCATGTAGGTGATTATGTATTTTGCGGAGCAGAGGTCAGGTGTAAGACATCTGGCTGTCTGTGTGCAGATTCAGAGGCTGCTGCTGTGAGAGATGGCAGAGCTGACGGTTAATACGAGACTGTGTGGGATTGATAGAGTATGCCCTTTTGGGTTGAGTTTCCTGGAGGAGGAGGCACAGACATATATCACCAAGCTCTGCACAGCACAAGAAAGGCATGTGGTCCCAGAGATGCCATTGGTTTTGCCCACAAGAGAACTCTGAGCTATCATTCTGTTCCAGCTTCCttttgatgtccttccagacctGCAGGTGGGCGATCGAGGCCATATTTTCTGTAAAAACTAAATGTCAGATTACAGCAGCAAATTGCACAGAAACTCTCATAGGCATAGCAGATGTAATACATTTATATCACTTGGCCAGAAAAGCCTTCTCTCACACACTGACAACCAAAACATGGTAACTGAAGACGTTGATGGTTTATGTATAATCTATCATAGGCTCTATAAGCATATGTATATAAATATTGTAAACATCAGCTGGTGAGGTAAAATATAGTAAATGTAGCCTACTTTAGGACTCTATTCAGTCTGTATTGCCGAAGCGTTACAGATTGCGTGCTAGAAAtgtcatacccccaagacatgctaacctctcacaatTACAATAACGGCagatattttttttggggggggggtataatatttgtgcgtctgttactttctcactcatcattattcttgattcattcaggattatccgtaatcatggtagcatccccATGAatttagaagtgtttagaaaatactatattcttatttacaataaaagttactccaaaatgacacaatacattatttaccattcatttctattggtcaCAAACTAATCTAAAACACAATCAAAACAGACAGGAAATGCATTAAACACATTTTCAGAGtaacaagcttgatgtagtcattgtgttctatgaatatgggaccaaatacttaactttttactactttaatacacatactgtataagtGAATTTGACCGATaattttggtcccctaaaatgggggactatgtacaaaaagcaCTGTAATTTCTTAATGGTTCACCAGATATGAATGAAAAGACCCTCaatttaaagctgacagtctgcactttaaccttctactcatttcaaatccaaagtgcttgaataaagagccaaaacaacaacaattgtGTCGCTGTCCTAATACATTTACCGTGAATACAGTCTCTGCTTCCACAGAACATTCCATTTGAAATGTTTATCACGCTGTAACGCTGAATTTCCGccatacggattgaatagagccctttaACATGTTTTATTCTTCATCAACAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698953 lncRNA upstream 41208 73320108 ~ 73325594 (+) True G1485848
TU1698952 lncRNA upstream 44425 73320108 ~ 73322377 (+) False G1485848
TU1698930 lncRNA upstream 71638 73294956 ~ 73295164 (+) True G1485828
TU1698929 lncRNA upstream 71980 73294600 ~ 73294822 (+) True G1485827
TU1698923 lncRNA upstream 81643 73284913 ~ 73285159 (+) True G1485821
TU1698945 lncRNA downstream 35405 73419784 ~ 73420295 (+) True G1485841
TU1698944 lncRNA downstream 36035 73420414 ~ 73421285 (+) True G1485840
TU1699003 lncRNA downstream 45991 73430370 ~ 73430937 (+) True G1485897
TU1699004 lncRNA downstream 46574 73430953 ~ 73431204 (+) True G1485898
TU1699009 lncRNA downstream 53622 73438001 ~ 73438273 (+) True G1485903
XM_021569660.2 mRNA upstream 316844 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 316844 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 318311 73044346 ~ 73048491 (+) False LOC110494525
XM_036950594.1 mRNA upstream 502196 72862359 ~ 72864606 (+) False LOC110494520
XM_021569653.2 mRNA upstream 502196 72862364 ~ 72864606 (+) False LOC110494520
XM_021569673.2 mRNA downstream 11361 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA downstream 11361 73395740 ~ 73416687 (+) True LOC110494537
XM_021569675.2 mRNA downstream 60371 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 60371 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA downstream 60371 73444750 ~ 73457632 (+) False taf4a
TU1698921 other upstream 84783 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 241446 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 321214 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 911878 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1061390 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 594511 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 1004157 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3299220 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4623911 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4633989 78018368 ~ 78019816 (+) True G1491899

Expression Profile