RNA id: TCONS_00046861


Basic Information

Item Value
RNA id TCONS_00046861
length 508
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_023466
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24416324 ~ 24503022 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGAGAACGAGGCTCCGCGGGGTCAGAGGGCATCACCTATTGTTCTGCACTTCAAAAcatataaacattaattaatcaaGGCTGGCCATGTTTCTCAGGGAAAAAGAAAAAGTAGGGTATGTTGTACCTACGAGTGCTATAGGCCAGAAGGACTTCTGATGTTGTAAATGAATGTGTTAGAAATCAACGGCGTCAGTGATTACGTTCTATCTTTTCCTGGATGAAAGGACATCAAACATTCGCTCTGAACCAAGGTTAAGCAGCAGAAAAGTCCTGCTGATTAGCAGTGCAGGTTCACTGGTGTAAATGAGGAATCTCTGATCCTGCTTGAGTCTATAATCTGCTTGCATGTTTACTGGCTAAAAGCAGGCGTGATGCTGCCGTGACCCAGGCTGATCCAGGTACTGTCCTTAAAAACACTACTGACACTAATGTCTTCTGACACACACGCTTCCCCCTGCCCTTCATGTTAaacgtgtacacacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0021545 cranial nerve development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009954 proximal/distal pattern formation biological_process
GO:0021675 nerve development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071698 olfactory placode development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005112 Notch binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046418 lncRNA downstream 250833 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046410 lncRNA downstream 304411 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00047193 lncRNA downstream 320416 24095316 ~ 24098879 (-) True XLOC_023461
TCONS_00047192 lncRNA downstream 320421 24095316 ~ 24098874 (-) False XLOC_023461
TCONS_00046860 lncRNA downstream 661998 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046862 lncRNA upstream 40400 24492203 ~ 24492517 (-) True XLOC_023467
TCONS_00046863 lncRNA upstream 101990 24553793 ~ 24598475 (-) False XLOC_023468
TCONS_00046864 lncRNA upstream 146100 24597903 ~ 24691775 (-) False XLOC_023468
TCONS_00047197 lncRNA upstream 146331 24598134 ~ 24695757 (-) False XLOC_023468
TCONS_00047198 lncRNA upstream 188970 24640773 ~ 24695757 (-) False XLOC_023468
TCONS_00046420 mRNA downstream 136868 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046421 mRNA downstream 137489 24273449 ~ 24281806 (-) False XLOC_023465
TCONS_00046422 mRNA downstream 137503 24276566 ~ 24281792 (-) True XLOC_023465
TCONS_00046419 mRNA downstream 147666 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046416 mRNA downstream 250762 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046425 mRNA upstream 249977 24701780 ~ 24724233 (-) False XLOC_023469
TCONS_00046426 mRNA upstream 250217 24702020 ~ 24724284 (-) True XLOC_023469
TCONS_00046427 mRNA upstream 281504 24733307 ~ 24797455 (-) False XLOC_023470
TCONS_00046428 mRNA upstream 291486 24743289 ~ 24796695 (-) False XLOC_023470
TCONS_00046429 mRNA upstream 291727 24743530 ~ 24796583 (-) True XLOC_023470
TCONS_00046414 other downstream 256185 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 272420 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 300900 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 442010 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1145936 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 556514 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 1907436 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 1909943 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 2023379 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 2057085 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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