RNA id: XM_021569674.2


Basic Information

Item Value
RNA id XM_021569674.2
length 1461
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110494537
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73395740 ~ 73416687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTAACCTGCTGTTCTCATCCAAATACTGTAGTTGACAGAGTAAGTTCACTCAGAGAGAAGGGTCCTGTACTGTTccatagagaaaggagagagtgtgtttgagagagCCAGTGAGTTTCTTGGGAGTGCTTTGACTCTCTTTCTGTCccaggagagaaggagggagatgagTTGTCCTGCTGAGGCTCTGAAGGGCTGACTGTTCCCCACCCCATCTCATCTCTGTGCCTGACTGTGTGACCTGACCCTCCAGTCCTCCTCAACAGCACACCTAATCTGATTCTGCAGCTCTCTTTCCGAAGCTGCCAGCACCATGAGCTCATCTGGGGCAAACCTCCACAACAAGCGTCTACCATTGGAGACAGAGCATGCTCAAAGAGTCCCAGAATTGGACTCAGCCCAGCAGCTGAAACTGAGAGAGCGACAGCGCTTCTTTGAAGAGGTATTTCAGCACGATGTGGACGTCTACTTGTCCTCTGCCCATCTGCATATTCATGACTATAAGAGACCTCCCATTGGCAGCGTCTCGTCCATGGAGGTGAATGTGGACATGCTGGAGCAGATGGACCTTATGGACATCTCTGACCAGGAGGCCCTGGATGTCTTCCTCAACTCTGGGGGGGATGAGGGGGTGCTGGCCTCCCCTCTGCCAGTAGttcatggcaacaacaacaacaatgaggTCATCAGCCAGGGACGCTCTGCCCACAACACAGGTGGTTATGTGGGGAAGTCTCGGatgtcctccacctcctccacttcctccaccaACAGCCAGAACACCAATGAGGATGGAAGGGAAACCCCTGTAGTCCAATCAGATGATGAGGATGTGAATGTCGGCACACTCTTGCTGATGGGATCAACCCCAGGGAAAGATGAGGAGAAGGATCGGCCCATCTTCTCTTCATAGAGGCCTTGCTTCACTTCCAATATTCACTAACATTTAGGACATACTGGTGCTGACAATTATCACTGAAAcgggacactcacacacagaggtgTTCCTTGGACTGGCAACTATCACTATCACAACGTTTTCTTTACCCTTCATTTAGTTTTGTCTGAACTGTAAATATAAGGCCAAATCTTCTCAAAGCTTGCTGATCTCCATGTATACTTCTGGCATATAGATAAcaagatatttatttttatttcctcATTTGAGATTCTAGTAGGGTCTGGCGACGTGTGATACGGACATTTGAGGAAGTACATTCCTGTGTGTACTCTACAGCCAGGATATGTACATAATAGAGTTGTGAAATATGCAACCATGTAAGCATGCTTTACTGTACTACAGACAGGGATTTACAATTGTGCAATTACACACCCAAAAACATTCTTTAGAGAGTAACTGCAATGCTGAGTAAATCTGGCCCTTAGTTCCCGTATTCCTCAAAATGTTGAACCAATCCCAAAACACCTGTCACAAATAAAAACTaaggatgtactgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1698946 lncRNA upstream 11598 73382607 ~ 73384142 (+) True LOC110494536
TU1698953 lncRNA upstream 70146 73320108 ~ 73325594 (+) True G1485848
TU1698952 lncRNA upstream 73363 73320108 ~ 73322377 (+) False G1485848
TU1698930 lncRNA upstream 100576 73294956 ~ 73295164 (+) True G1485828
TU1698929 lncRNA upstream 100918 73294600 ~ 73294822 (+) True G1485827
TU1698945 lncRNA downstream 3097 73419784 ~ 73420295 (+) True G1485841
TU1698944 lncRNA downstream 3727 73420414 ~ 73421285 (+) True G1485840
TU1699003 lncRNA downstream 13683 73430370 ~ 73430937 (+) True G1485897
TU1699004 lncRNA downstream 14266 73430953 ~ 73431204 (+) True G1485898
TU1699009 lncRNA downstream 21314 73438001 ~ 73438273 (+) True G1485903
XM_021569672.2 mRNA upstream 11361 73366802 ~ 73384379 (+) False LOC110494536
XM_021569660.2 mRNA upstream 345782 73044346 ~ 73049958 (+) False LOC110494525
XM_021569662.2 mRNA upstream 345782 73044346 ~ 73049958 (+) False LOC110494525
XM_021569661.2 mRNA upstream 347249 73044346 ~ 73048491 (+) False LOC110494525
XM_036950597.1 mRNA upstream 531134 72862546 ~ 72864606 (+) True LOC110494520
XM_021569675.2 mRNA downstream 28063 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA downstream 28063 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA downstream 28063 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA downstream 28063 73444750 ~ 73457632 (+) True taf4a
XM_021569681.2 mRNA downstream 639488 74056175 ~ 74066815 (+) False LOC110494542
TU1698921 other upstream 113721 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 270384 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 350152 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 940816 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1090328 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 562203 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 971849 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3266912 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4591603 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4601681 78018368 ~ 78019816 (+) True G1491899

Expression Profile