RNA id: XM_021569679.2


Basic Information

Item Value
RNA id XM_021569679.2
length 4354
RNA type mRNA
GC content 0.49
exon number 16
gene id taf4a
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 73444750 ~ 73457632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATGTATTCAGCGCATGCGCGCGTTACTTTCGACGCTCCATAGCTTGCAGCAGTGTGAAGATGGCGGCAGGCTCCGATTTGCTAGATGAGGTTTTCTTTAACGCTGAGGTGGACGAGAAAGTAGTTCGTGATCTTGTGGGGTCTCTTGAGTCCGAGTTTTCGGGTCACGAGAGCCCTGAGGCAAGTAGCCAGACAGTCGCTAAACACATGGCCAGTTCCGGGACAGGGTTTAATGCTAATGTCCAGCAGAACAAACGGGGACTTGCTCAAGAGGTTGCAAAAGCAGGGGCTGGAGTGCAAAAGGGGTGTCATTATTAGTAATACGTGGTCCCAGGGTTCAGCTATGGATGCCTCATCGAGTGAGTCGGACTCATCGGCACGACACGGCCAAGGAAAGACTGTTGCTGTCAGTGCCAGTATAATAACTCCTCTCCCAAACCACGGGGGGAAAGTAGCCTCTTCCGCAACTCAAACTTTGAATGGAGGCAGTTTAATGAACTGTCACAATTCAGGAAGCGCTGTCTCTCTCACTGGGGCACCGCTGTCAAGTAGTTGCACGAGTAGCGGCAATGCCTCGGTAGCTGTCACAGTTGTCAACAACGGGCCGGGGTTGTCAAAAGGACATGCGAGCGCAGTAATGCCACCTTCATTGAACACCACTATCACCCAGACATCATTCGTGAACTCTCAGAATGTTGTCACCTCGTCTCACGCTGCGAGTCTGGGCACTGGACCTGCCATATCACATATTGTGAGGCCATCTATGCAAACTGCGGGATCGGGTACAGCGAATGGTCCTAATGTGGGATTGCCTTTCGATTGCCTGAACAATGGTCAGTCGCCCACGTCTGTGGCTGTCAGTGCGGGGTCGCACATGATCATGGCAGAGGCGCCCAAAACAAGCATACAGACTGCTTCATGTGCTGTAACGAACCCGTCGTTCCAGAGCGCACCGAGGGCTTCCACTCCGGTGACAGTGGCTGCAAGCCCGGGAGGGAGCCGTTCTATCGCGCAACAGGTGTTGGCGCCTCGGCACCCCCAGACATCCCCGAACCAGCCCAACGTTCAGAACATCCAGCTTCCCCCAGGTATGGTCCTGGTGCGCAGTGAGAGTGGGCAGCTGTTGATGATCCACCAGCAGACCCTGGCTCAGATGCAGTCCCAGTCCCAATCCCAGGGAGTCATGGCCCCCCGCCCAGCCACCCCCACCAGCACTCCTCCTTTCCAGATCACCTCAGTCCAGGCTCCTGGAACGCCCATCCTCACTAGGCAGGTGACTCCCACCACTATCATCAAGCAGGGCTCACCTGTGCCAACCTCTGCTCCTGTCACCACCACACTCCAGAGGCCTCCTGTCCTACAGAGTCCCATGATCGTGGTAGGGGCTGCTGCAAGCACTTCTATGGGGACAGCGCTACCAGGGGCCACCCAGAAGACCGTCACCGCATCACCCGGGACCACTGTCACCTTGGCAACGGAGACGATGGAGAATGTGAAGAAATGCAAGAACTTCCTGTCTACATTAATCAAGCTGGCGTCCAGCGGGAAGCAGTCCTCAGAGACTGCCGCCAACGTTAAAGACCTGGTCAAAGATCTCCTGGAAGGGAAGATTGAAGTCGAGGACTTCACTAACAGGTTATACAGAGAGCTCAACTCCTCACCTCAGCCTTACCTCGTGCCTTTCCTCAAGaggAGCCTTCCTGCTCTGCGGCAGCTCACCCCAGACTCAGCAGCCTTCATCCAGCACAGTGGGCTCCAGCAGCAGGCCTCTGCCACCACCCCTACCACTGTGGTACTGGACAGCCCAGCCCTGCGCCCTGCAGCCCCAACCATCAGACCACACCTCCAGCCTGTCATCAGCAAACAGGGGCTGACTACCCCAATGGTGCTCCAGCCTCGGCAGCAGGGGGCAATGGTAAGGCCTCTTCAGATGACCCCCATGGTGACCCTCAGAGGTCCGCCCCCCCACAGTCACATCATGCTGGGACAGCCACAGGTGCAGCTCAAACAGCTACAGACAGtccctgtagTGAATCCTGGAGTGTTGACTGGATCTAAGTCGTCTCCTGTTGCTGCCTCTCTGGCCACTGTAGTTCAGAAGAACAAGCTGAAAGAAGCTGGGGGCACGTTCAGGGATGACGATGACATCAATGATGTGGCATCTATGGCTGGGGTTAACCTGTCTGAGGAGAGTGCCCGTATCCTGGCAACCAACTCCGAGCTGGTGGGAGCGGTGACACGGTCCTGTAAGGACGAGGCCTTCCTCCATACCGCCACACTGACCAGTAGAATACTGGAAATAGGTAAGAAGTTTGGTGTGAGTGATCTGGGGCCGGAGGTAGTGAACTACGTGTCCCACGCCTCCCAGACCAGGCTGCAGAACCTGTTGGAGAAAGTCTCTGAGGTGGCCCAGCAGAGGAACATCAACTTCAAGGAGGACAGTCGGTACGAGCAGACGAGCGACATGCGAGCCCAGATCAAGTTCTTTGAGCAGCTGGAtcagatggagaaacagaggaaagaggagcaggagagagagattctgaTGAAGGCAGCAAAGTCTCGTTCTCGTCAAGAAGACCCTGAGCAGCTGCGGTTGAAACAGAAGGCCAAAGAGATGCAGCAGCAGGAGCTGTTTCAGTTGAGACAGAAGGAAGCTAACCTGACGGCGCTGGCAGCCATCGGCCCCAGGAAGAAGAGGAAAATGGAGGCTGCAGCCGCTGCAGCTGGAGCTGAGggctCAGGGTCCAGTCCCGCTGCGTCTGGTAGTGGTAGTTCAGGAGCATCCAGACAGTTTATCCGCCAGCGCATCACTCGTGTCAACCTCAGGGACCTGCTCTTCTGtttggagaatgagagagacaccAGTCATTCCCATCTCCTCTACAAAGGCTTCCTCAAATAGACACCCAGAGAGCCAGTCCAGAGAGCTGTCACCCTAACCTTCACTAAAGCAACTCTCTCAAATAGGGCTGTACCCTAGAATTGGATAAAGAGGACAGCAATACAACGATGTCAAGATTCTCCAGGCCACAGTGAATGGAGCTACCTAAAGTGACTGGAACGTTTGTCTCCCCTGTATACTCTGGATGTCCTTTCGCTCTTCATCTGGTTCTAGGCCTGACTGCTCCCTCAacactcctccaccttccatcAGAGCAATCCTGGAGCGTTCAcattttctactgtttttatttccTTTTTATTGACTTTGTTTTAGAATCCCCTTTTAATGAAACTGTAAATAAATtaatacattattatacattttaCTTGGAAGGCCGTTTTGTAGTGTGCAAACCGATTCTACAAAATAGTCAATTTATTTTATAATTCTGTTTatatgaaaaaatatatttttaataattAATCATCACTGTTTCTAGCGATTGTTAAGAACAATTATCCTTATTTTGTTTTTGGTATTCTATTGGCCTCTGAATTAGTTTGAACACTTCTGATTTCTTCTTGCCTTCCTGACAAAAGAAGCCATatattttaatataatgttgAACAGCAAAGCAATTCATCTAGTGATTCATTCTGAAATCTGAAGCAGTCAATGTGTCTTTAGTTTCTCTGTTTGAGCTTGTCTTGAATTCAATGTCTTGTATTTATATTCTGTAATCAGATCAAACACGTTTTTCTTTTCAGTCTCCATTTGTGTTTTTGAGATCACATCTCCTGTTTCTGCATGAGATAAGGtgtgaaaatgtgtattttagAGGGAATGAGTTGATAGTCTCTACAATTGTATTCTAatgatttaatatttgttttatgCATTTTTGGGTCATTTAGGTATTTGCAATGATGAATTATTGGATTTCAACAATAGTAAAAACTATTTTAAAATAGACAAACTCAAAGGCCCCTTTGTCACCACAAAACAACTGTGCATATGCATGTAGGAAAGTTTCATTTTTATTAGTTTTATTGGACTGCATGTATTCTACCATTTCTCAAATAACTTTATTCTTATATTCTAACCCTAGACTTGATGATATTCTGAGGTATGAATGGTgatgttattattttttaaagctgTCCTATCTGTTCAATAATCTGTGCTTCTGTTCTGATGCCCCATTGGACAGCCCTGGCTAGAACTCAGTGGTATATTTTCCTGATCACTTAGATTTTAGATGAAGATTTTTCAGTACCTGTTACTTTCCATATTTGTCTCTTACAGAGAAATCAAAGTAAGGGGGAAGCATTGCATGTCTCCCTTATTTCTTGTACATTTTGCACAGACACTTGTTCATATGTAAATATTTTACCTAAGGTTTTTTAACTGCAATGGTTTTGTATAGGATTGAAAGATAATAAACTCCTTCATTAAAAGTGCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1699013 lncRNA upstream 2843 73441055 ~ 73441907 (+) True G1485907
TU1699009 lncRNA upstream 6477 73438001 ~ 73438273 (+) True G1485903
TU1699004 lncRNA upstream 13546 73430953 ~ 73431204 (+) True G1485898
TU1699003 lncRNA upstream 13813 73430370 ~ 73430937 (+) True G1485897
TU1698944 lncRNA upstream 23465 73420414 ~ 73421285 (+) True G1485840
TU1699203 lncRNA downstream 3083 73460715 ~ 73460920 (+) True G1486085
TU1699223 lncRNA downstream 16104 73473736 ~ 73474399 (+) True G1486105
TU1699224 lncRNA downstream 17022 73474654 ~ 73474915 (+) True G1486106
TU1699340 lncRNA downstream 205810 73663442 ~ 73663848 (+) True G1486221
TU1699345 lncRNA downstream 211439 73669071 ~ 73671902 (+) True G1486225
XM_021569673.2 mRNA upstream 28063 73395740 ~ 73416687 (+) False LOC110494537
XM_021569674.2 mRNA upstream 28063 73395740 ~ 73416687 (+) True LOC110494537
XM_021569672.2 mRNA upstream 60371 73366802 ~ 73384379 (+) False LOC110494536
XM_021569660.2 mRNA upstream 394792 73044346 ~ 73049958 (+) False LOC110494525
XM_021569681.2 mRNA downstream 598543 74056175 ~ 74066815 (+) False LOC110494542
XM_036950602.1 mRNA downstream 598543 74056175 ~ 74066815 (+) False LOC110494542
XM_036950604.1 mRNA downstream 598543 74056175 ~ 74066815 (+) False LOC110494542
XM_036950605.1 mRNA downstream 598543 74056175 ~ 74066815 (+) True LOC110494542
XM_036950607.1 mRNA downstream 612429 74070061 ~ 74084580 (+) False LOC110494543
TU1698921 other upstream 162731 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 319394 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 399162 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 989826 72454563 ~ 72454924 (+) True G1484897
TU1697747 other upstream 1139338 72304723 ~ 72305412 (+) True G1484782
TU1699979 other downstream 521258 73978890 ~ 73979435 (+) True G1486811
TU1700469 other downstream 930904 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 3225967 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 4550658 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 4560736 78018368 ~ 78019816 (+) True G1491899

Expression Profile