RNA id: XM_021569681.2


Basic Information

Item Value
RNA id XM_021569681.2
length 5380
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110494542
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 74056175 ~ 74066815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGTGTACAGATATTCTCCGAATGCAAGATATCGTGGTGGCATGCTCAACTCGTCTTGATTTCATTCATCTTAACGATTGTTAACATTTGTAACGTTTTTAATAGCTTTTTAAATAGCATATTATCTTATTACGCCATGGTGTGCGCCTGGTTAGGGCTATTCCCATAGAATATAATCCATTCTATGTCTATGGCTATTCAAACAGGGAGAACGCTGCCAGCGATAGTCAAATTGTTTGCTGAGCTGAGACGAAAATGTAGGATGTGTCCCAGGATTGAACGGTTTTGGTTATGGCTAAACGGATTCTATTGCTCTACTCTGCTTAAACGCGCCTTCTGGCGTTTAATTATACTCCCCATACATGCTTGGAGATTGATCATCCCAAATTGTCCTCCTGATCATCCAGAACTCATTCAGGACACCAACGAGTACTACTGCGAGTACGACTCAACATGGGAAGATCCAACAAGTGAAGAAACAAGTCGTAAGAGAACCAACAAtTACACCATTCGGTCAACAAGGCAACGAGATGATAGGCGTATGCCTAATTTACAGTTCTACCTTGGACagagggcctcctcccctgatgGAATCTACATTGAGGACTTTCACAATAACTGGTATGGGAAATATTCAAAACTGGAAAGAGTTCACTCATACATACAATGGTTGTTCCCTCTTCAAGAACGAGGAATGAATTATCAAGCCAAAGAACTCACCAAGAAGGAAATTGAGGCTTTCCTTCAAGATGAAACTGCGAAGAAGAGGCTGGTCAAGTCGTACAAGCTCATGCTGGACTTCTACGGCATCCAGCTGTCAAATGACACAACAGGGGAAGTACGACGTGCTAATAACTGGCGTGACAGATTTGACAACCTGGACAGACATACACACAACAACCTGCGCATCACCCGCATCCTGAAGTGCCTGGGCACTCTGGGGTTCCCCCACTACCAGGCCCCACTCGTCCGCTTCTTCCTGGAGGAAACTCTTGTCAAAGGCAACCTGTACAATGTGAAGGAGAGCGTGCTCAACTACTTCATTTCTGCTGTCATTGTTCAGCAAAAACGCAAGGAATTAGTTGAGTATGCCTATAAGCTCTATGAGGTCAAACATCAGTTTGTCGTGCCCTAAGAAGATCAAGTGTAAATTTAGGGAAGGGACATTCCCACATAATAAGAACCCAATTGATCTGTAACCAGATCCAAAACAGAATGGCATATACTCAGATGACAGTGATGACAACACTACCAGTCATTAGTCTGTCTCACTATGTTAACAAGGGTAAGCCAACGGATAGGAGTGTAATGGGAAATTATGTTAGTGACTTAGTGCGATTGGGGACGCCAAACAATGTGTGGTTGACACGGGTATCCATACCTCATGATAGCTTGCGTGGTCTAGCGACTAGTTACACTTAGAGAAACAAAGGTACCAGTCAGGCCTCAATGACTACTAGTGGAAGGAATCAAAACACCAGTGCTGATTCATCCTCTGAGAGTCTACCAATTATGCAAAATGATACTGCTCAGTCCAGTTATGAGGTTTTTGGTAACGGGAGCTCTTTAACTATCCACCTACTCTAGCGCCCCACTACTGATTCTCTGAAAATAATAGCTGCAGCTATTAAGCAATCTGAATGTGGACCTAGTGGTGTAGTTTCAGAGACAATTACCGATGATCGGAGAAAGCGAGCTAGACATAAGCAAACAGAGCATAACCTTAAACTTAGAAGAGTTTCAGAGGAAAAGACTAATAAAGATGATGATGATAGAAACAATAAGGGAGCTGCAGAAAAGCAAGAAGAGAGTGAATCAAGCAGAGAGGTTTCAGAGGACAATATTAGTACGTCCAGTGAAAGTTAATTGAGTAAGAAACCTGAAGAGAAACTGCCATGCCCAGCAAAGGAAAACTTACTCCAGGGAAAGATTGCGTGTTTGAGATAATGTGAAGATTGATTTGAGTAATCACCCATGCCCTGCACTAATGAAGGGAGAAATAACAAGTATGACCGGGGAGTGTGAGCGGTTCGCCGGGGGAGTGTGAGCCCGGCGAACCGGCTGGGGCGTGGGAGCCCGACGAACCGGCTGGGGCGTGGGAGCCCCGGCGAACTAGCTGAGGCCTGACGTGGGATGGGCGCCTCCTGAGCCAACCGGGACAagaaaacctctcgagccagctagggcGTGGAAGCCCGACGAGCTGACTTAGGCACCCCCGATTCCATCAGCGGCGGCCCCCGGACCCAACGTCACCACCAACCGGAAAGCCAGCACTCCCCGATGCTTCATATGATGGCTTCGGGATTCTGTAGGACGGACGCTGGAgaagagaagcaggtacggggagtagaACATTCAATATGGAACAGACATCAAACAGGACAGAGACAAAAGACAAACCAACATGAATCCTGAAGCAGGGAACAAAGCTTGGGAACatacagatataggggaggtaatgacccaggtgattgagtccaggtgagtccaataattgcTGATGCGTGTGacggggaaggcaggtgtgcgtactgatggtggcaggagtgagtaatgctggggagcctggcgctTTTGAGCAGGAGAAGGCGTGACAAGAGAATAAATGTTAATTgacttattttttttatgtttcaaTGACAATTGTCAACTGCAATTAGCAATACTATAGATACTAGGGTTGGTGTcaattccattttaattccagtcaACTCgagaagtacactgaaattccaattatTTTCAACGCTTATAAATGAGGAaaatttggaattggaatttggtttacttctGAATAATATtaactggaattaaaatggaattgaccccaacctgaTAGAGACAACCAATCAGTGCTTTACTGCTGAACATACAATCACATACTGTTTCCAATGACTTCATACTATAGCAATCAATGTGTTTAAAATTCTCACAATATCCATTCCAGATATATGGTTTATTATCCCTCTACTTTTTTAAAATTGTGATTAAAAAGATACCAGCGGGTATCAATTTGTATGTACACAAATTCATTCATATTTATGTACCAAGGAAGGTGAAGGAGTTAATCAGTTACTTCCATGTGATGCTTAGACAGAAGAAAAGTATACGTAATATATAAATAACATGGTATCATAAACTCAGTTGAATTTAAATTACCTCAAAATCAGTTTTTTCAAATGTGACAAAAAATCATAAAATATGAAAATGACTACAAAGATGTTCAGAACTTTCAACTACAAGAGCATTGTACTTTCAAATCCTTAATTCCCAATAACATCTATTTGCATACAGTTATGATGCTGAAAGTGAAAGTCACAGTGTGATTAATTTACTACAGTGAAAAGTTGTCCACAAAAGAaaacagtagctaggtttccatccaattggcgacaaaTTTTCGTGTGAATATtctcaaatctgcataaaaacaatatgcccATTTTCCCACCAGATATGTGTTTCcgtcaaattgacttgttgcagataaaaggttgtgcgtgatgacgtactgcgcataaaaaatacattttgtgttTAAATTCCCATGCACCAAATACATTTTGTGTTTAAATTCCCATGCACCAAATACATTTTGTGTTTAAATTCCCATGCACCAAATACATTTTGTGTTTAAATTCCCATGCACCAAATACATTTTGTGTTTAAATTCCCATGCACCAAATACATTTTGTGTTTAAATTCCCATGCACCAAATACATTTTGGGTTTAAATTCCCATGCACCAAATACATTTTGTGTTTAAATTCCCATGCACCAAATACATTTTGGGTTTAAATTCCCATGcaccaaatacatttttttaatgtaaatgAGTTTCCCTCACaatttcaactctactgatgttTGATTTATATAGTCTGGTATtggcacgtgcgctctagccaacagtgcTATCTGCGCCTTCTTGACTAGAGTGCacgtatagcctacatgatgagattattattatgGACAAAGGAGCGAGATTATTTGTCAGGTGGCAGCCAAACATCGattatcatgtcaccagaataagatccTCGATATTTTGGAAAGGAGGATCAAGCTGTAGGATCTTGCaatttcaccaccctgtgaagttcatcataattgaTATCAATATTTGCAGACATAAAAGCATTTCCATCGACATTTCTCGCGTAtttcattttacagacacaaaaagatccaacCTTGTGTAGTGTATTTGTTTTGTGGACATTTGAAAAGTTTACACAAAAGTTTACACAAAAATCTTTATTTTTCCATCAGGCGTTTCCATCAGACGTGTTTTATCCGACATTACTTGCATAAAAAGGTTATTGCAATGTATTTTTGTCAGTTTCCACTTCTGCAGTTTTAGCACTCTCCTTCGGGACGttattttttgtaaattctttgcTCTTGCTCCTGTCCCAGCGGTCTCTGTGTTTGTCCCCAGTCTTGTGCTGggactgagacagggagagagtcagTAATATTTATTCTATTAGGCTCCCTCTCCCTAGCTTGGCTGACACAAAGACTTTGATTTAGGTGCTAGCCAGACtactctctccctgcctctgtccctgtctctgctcCTGGATTTGTCCCTTTTCTCTGTTGCTGTCATAGTCTCTCCAGTCAGTGACCATTGTCCCATTGGCTGCATTAGAGATACTAAGCAACCTAAATCATATCCACGCATTATTACAAAGATACATTTTAGAACTTTCAATGAGCAGCATTTCCTGTATGATCTGGGTTGTATGATTGGAAGGCTGTGTCCTCTATctctgattttttatttattttacctttatttaactaggcaagtcagttaagaactaattcttattttcaatgacagttggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcgggggtttgaacttgcaaccttccggtaactagtccaccgctctaaccactaggctaccctgccgccccagggtaaAGGACAGCTCTAACTCATGGTTCATGCATGAATTAGCTGAAAGATTTCATGAACGAAACTTAGCTTGGGCTAAGGCTAGATTGACTGATTCTACCTCTGACTGGCAGTCCTTTAGGCATTTCAGAAATAGATGTCTTACTCTGGTTAGAAAAGCAAAGTCAACTTACTTCTTGAATTTTGTATCTGAGAATGTTGGAAATCCATCTATATTCTGGAAAGTGGTCAAATCTCCCCCCATTTCCCCAGTGGGTTATGACAGCCTCTGgtccctttccttccagttctctgctgccaatgactggaacgtattgcaaaaatcactgaagctggagtcgtatatctccctctctaactttaagcatcagctgtcatagcagcttactgatcactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1699990 lncRNA upstream 69027 73986355 ~ 73987148 (+) True G1486822
TU1699986 lncRNA upstream 74233 73981654 ~ 73981942 (+) True G1486818
TU1699983 lncRNA upstream 74557 73981303 ~ 73981618 (+) True G1486815
TU1699982 lncRNA upstream 74907 73980363 ~ 73981268 (+) True G1486814
TU1699980 lncRNA upstream 76276 73979685 ~ 73979899 (+) True G1486812
TU1700118 lncRNA downstream 78637 74145452 ~ 74145667 (+) True G1486928
TU1700128 lncRNA downstream 118722 74185537 ~ 74185740 (+) True G1486938
TU1700320 lncRNA downstream 167145 74233960 ~ 74234247 (+) True G1487100
TU1700371 lncRNA downstream 215252 74282067 ~ 74282292 (+) True G1487149
TU1700375 lncRNA downstream 246468 74313283 ~ 74313436 (+) True LOC110493251
XM_021569675.2 mRNA upstream 598543 73444750 ~ 73457632 (+) False taf4a
XM_021569677.2 mRNA upstream 598543 73444750 ~ 73457632 (+) False taf4a
XM_021569678.2 mRNA upstream 598543 73444750 ~ 73457632 (+) False taf4a
XM_021569679.2 mRNA upstream 598543 73444750 ~ 73457632 (+) True taf4a
XM_021569673.2 mRNA upstream 639488 73395740 ~ 73416687 (+) False LOC110494537
XM_036950607.1 mRNA downstream 3246 74070061 ~ 74084580 (+) False LOC110494543
XM_036950608.1 mRNA downstream 3246 74070061 ~ 74084580 (+) False LOC110494543
XM_036950609.1 mRNA downstream 3248 74070063 ~ 74084580 (+) False LOC110494543
XM_036950606.1 mRNA downstream 3251 74070066 ~ 74084580 (+) True LOC110494543
XR_005037068.1 mRNA downstream 84450 74151265 ~ 74182801 (+) False LOC110494547
TU1699979 other upstream 76740 73978890 ~ 73979435 (+) True G1486811
TU1698921 other upstream 774156 73281260 ~ 73282019 (+) True G1485819
TU1698303 other upstream 930819 73122826 ~ 73125356 (+) True G1485260
TU1698249 other upstream 1010587 73044737 ~ 73045588 (+) True LOC110494525
TU1697884 other upstream 1601251 72454563 ~ 72454924 (+) True G1484897
TU1700469 other downstream 321721 74388536 ~ 74409189 (+) False LOC110493252
TU1703557 other downstream 2616784 76683599 ~ 76684020 (+) True G1490016
TU1705554 other downstream 3941475 78008290 ~ 78008799 (+) True G1491886
TU1705568 other downstream 3951553 78018368 ~ 78019816 (+) True G1491899
TU1705667 other downstream 4122197 78189012 ~ 78190290 (+) False G1491963

Expression Profile