RNA id: TCONS_00046863


Basic Information

Item Value
RNA id TCONS_00046863
length 437
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_023468
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24553793 ~ 24695757 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGTTTAAAAAAACCTCGGAAACTTTCATCTTCTCACTGTCTACTAATTAAAACACATGAATTAATATGAGCACTCAATGATTTGTATCTAAATGCAGACTGTCAGTTATCTTTTCTTTGCTGGTTTTCTGATGTAAACGTGATGTGTCACTCTGATTCATGCAGGAAAAGCTGGCGTGATTGAGCCACCGCTGCGGGAGCGTCTGACTGACAGGTGTTTGGCAGGTCAGGCCCTCTCTGTAGAGTCTGCCCTGCTTCAGGACACACTCCTGTCATCTCAGGTGAATCTGTGCACATCTAAAGCAGAGCCAGCAGGCCGGATAAAGAGCCCTCGTCCCACTCTCACATCAACAGTTGCGACCCAATAATGAGGACATCTGTTTTCATATGGCGCTTGACGCGTAGCACCAGAAATTTGATGTCATCCTGTCCAAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046424 lncRNA downstream 50771 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046862 lncRNA downstream 61276 24492203 ~ 24492517 (-) True XLOC_023467
TCONS_00047196 lncRNA downstream 97431 24439129 ~ 24456362 (-) True XLOC_023466
TCONS_00047194 lncRNA downstream 97447 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046423 lncRNA downstream 101946 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047198 lncRNA upstream 42298 24640773 ~ 24695757 (-) False XLOC_023468
TCONS_00046865 lncRNA upstream 42805 24641280 ~ 24695684 (-) True XLOC_023468
TCONS_00047199 lncRNA upstream 202301 24800776 ~ 24828667 (-) False XLOC_023471
TCONS_00047200 lncRNA upstream 202301 24800776 ~ 24829401 (-) True XLOC_023471
TCONS_00046437 lncRNA upstream 377861 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00046420 mRNA downstream 271366 24273371 ~ 24282427 (-) False XLOC_023465
TCONS_00046421 mRNA downstream 271987 24273449 ~ 24281806 (-) False XLOC_023465
TCONS_00046422 mRNA downstream 272001 24276566 ~ 24281792 (-) True XLOC_023465
TCONS_00046419 mRNA downstream 282164 24183752 ~ 24271629 (-) True XLOC_023464
TCONS_00046416 mRNA downstream 385260 24164227 ~ 24168533 (-) False XLOC_023463
TCONS_00046425 mRNA upstream 103305 24701780 ~ 24724233 (-) False XLOC_023469
TCONS_00046426 mRNA upstream 103545 24702020 ~ 24724284 (-) True XLOC_023469
TCONS_00046427 mRNA upstream 134832 24733307 ~ 24797455 (-) False XLOC_023470
TCONS_00046428 mRNA upstream 144814 24743289 ~ 24796695 (-) False XLOC_023470
TCONS_00046429 mRNA upstream 145055 24743530 ~ 24796583 (-) True XLOC_023470
TCONS_00046414 other downstream 390683 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 406918 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 435398 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 576508 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1280434 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046441 other upstream 409842 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 1760764 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 1763271 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1876707 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1910413 26508888 ~ 26534654 (-) False XLOC_023502

Expression Profile

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